Wall clock time and date at job start Mon Mar 30 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48496 * 109.47125 * 270.00489 * 3 2 1 5 5 H 1.48498 * 109.47295 * 30.00473 * 3 2 1 6 6 H 1.48504 * 109.46933 * 150.00494 * 3 2 1 7 7 C 1.37875 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99395 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00035 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46884 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46786 * 180.02562 * 10 9 7 12 12 O 1.42903 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.35899 * 116.99930 * 180.02562 * 12 11 10 14 14 C 1.38747 * 120.05586 * 359.97438 * 13 12 11 15 15 C 1.38125 * 119.94590 * 180.02562 * 14 13 12 16 16 C 1.38289 * 120.05159 * 359.97438 * 15 14 13 17 17 C 1.38243 * 120.11362 * 0.02562 * 16 15 14 18 18 C 1.38163 * 120.05438 * 359.97438 * 17 16 15 19 19 C 1.50708 * 120.02715 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47325 * 265.02667 * 19 18 17 21 21 O 1.20824 * 119.99697 * 359.97438 * 20 19 18 22 22 O 1.34222 * 120.00261 * 180.02562 * 20 19 18 23 23 H 0.96998 * 119.99590 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47303 * 59.99684 * 9 7 2 25 25 H 1.09003 * 109.46742 * 299.99481 * 9 7 2 26 26 H 1.08993 * 109.47093 * 59.99926 * 10 9 7 27 27 H 1.09003 * 109.46925 * 299.99268 * 10 9 7 28 28 H 1.08998 * 109.47474 * 59.99538 * 11 10 9 29 29 H 1.08995 * 109.46823 * 299.99558 * 11 10 9 30 30 H 1.08000 * 120.03046 * 0.02562 * 14 13 12 31 31 H 1.07993 * 119.97844 * 179.72247 * 15 14 13 32 32 H 1.08004 * 119.94567 * 179.97438 * 16 15 14 33 33 H 1.08001 * 119.97538 * 179.97438 * 17 16 15 34 34 H 1.08995 * 109.47041 * 25.02760 * 19 18 17 35 35 H 1.08999 * 109.47067 * 145.02382 * 19 18 17 36 36 H 0.96695 * 117.00358 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 8 6.0279 -3.9838 -0.0027 13 6 7.3752 -4.1618 -0.0022 14 6 8.2215 -3.0623 -0.0018 15 6 9.5905 -3.2458 -0.0018 16 6 10.1178 -4.5242 -0.0017 17 6 9.2767 -5.6214 -0.0021 18 6 7.9067 -5.4430 -0.0021 19 6 6.9904 -6.6396 -0.0031 20 6 6.5873 -6.9624 -1.4188 21 8 7.0012 -6.2896 -2.3331 22 8 5.7677 -7.9967 -1.6640 23 1 -0.4849 0.8401 0.0004 24 1 3.8753 -0.6803 0.8888 25 1 3.8745 -0.6800 -0.8912 26 1 3.6579 -3.1497 -0.8924 27 1 3.6586 -3.1509 0.8876 28 1 5.9149 -2.1233 0.8881 29 1 5.9149 -2.1220 -0.8918 30 1 7.8101 -2.0637 -0.0014 31 1 10.2496 -2.3904 -0.0060 32 1 11.1885 -4.6658 -0.0021 33 1 9.6909 -6.6188 -0.0024 34 1 7.5087 -7.4945 0.4310 35 1 6.1009 -6.4165 0.5861 36 1 5.5376 -8.1650 -2.5880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157365485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:31 Heat of formation + Delta-G solvation = -121.836552 kcal Electronic energy + Delta-G solvation = -19214.977888 eV Core-core repulsion = 16049.895274 eV Total energy + Delta-G solvation = -3165.082614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65229 -39.71287 -37.51604 -36.12416 -34.16914 -33.12453 -31.85598 -30.03633 -28.21935 -27.28134 -23.79170 -22.81796 -21.71805 -20.98967 -20.05489 -18.14356 -17.92717 -16.85011 -16.59724 -16.28769 -15.85001 -15.63182 -15.39751 -14.49404 -14.21739 -13.67669 -13.45080 -13.32206 -13.02360 -12.73029 -12.50161 -12.23455 -11.94321 -11.58611 -11.44105 -11.31987 -11.20686 -10.68895 -10.65487 -10.61494 -10.09328 -9.87303 -9.76007 -9.26744 -8.98511 -8.58629 -8.14122 -6.08594 -4.07649 1.16871 1.42329 2.21793 3.02553 3.27413 3.34472 3.36751 3.37672 3.79171 4.40691 4.46434 4.66952 4.92729 5.05232 5.11948 5.24419 5.32478 5.34378 5.39752 5.40061 5.50991 5.61451 5.79283 5.92255 6.27925 6.29110 6.37021 6.39644 6.43592 6.45967 6.74399 6.77195 7.17752 7.30272 7.51966 7.72850 7.87138 8.48464 8.95940 9.52749 11.04725 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.004321 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.075835 B = 6478.493903 C = 7500.055176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.100 4.100 11 C 0.057 3.943 12 O -0.313 6.313 13 C 0.158 3.842 14 C -0.210 4.210 15 C -0.074 4.074 16 C -0.166 4.166 17 C -0.068 4.068 18 C -0.122 4.122 19 C -0.062 4.062 20 C 0.481 3.519 21 O -0.507 6.507 22 O -0.520 6.520 23 H 0.264 0.736 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.565 -12.704 0.565 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.047 4.047 10 C -0.138 4.138 11 C -0.018 4.018 12 O -0.226 6.226 13 C 0.112 3.888 14 C -0.229 4.229 15 C -0.092 4.092 16 C -0.185 4.185 17 C -0.086 4.086 18 C -0.123 4.123 19 C -0.099 4.099 20 C 0.323 3.677 21 O -0.394 6.394 22 O -0.332 6.332 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.032 0.968 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 19.445 -12.448 0.723 23.100 hybrid contribution 0.268 1.147 -0.707 1.374 sum 19.713 -11.301 0.016 22.723 Atomic orbital electron populations 1.69911 1.06291 1.26975 1.50834 1.25018 0.94751 0.99154 0.94466 0.86778 0.80322 0.83617 0.78566 1.20213 1.21255 1.19058 1.21060 0.89081 0.94675 1.51182 0.90828 1.19513 0.97573 0.91096 0.96519 1.21518 0.88785 1.00731 1.02764 1.23229 0.97728 0.79907 1.00891 1.86079 1.17881 1.31322 1.87358 1.18860 0.83341 0.93268 0.93378 1.21323 0.94347 0.98491 1.08753 1.20965 0.94343 0.97307 0.96570 1.20934 0.99596 0.92417 1.05529 1.20782 0.91470 0.99112 0.97216 1.18558 0.93536 0.91003 1.09192 1.20026 1.01368 0.97383 0.91106 1.23403 0.74917 0.76784 0.92634 1.90736 1.52639 1.49031 1.46960 1.84516 1.62568 1.49438 1.36686 0.92632 0.96338 0.96812 0.91667 0.91543 0.92221 0.92292 0.85090 0.85868 0.85990 0.85635 0.87048 0.86208 0.73239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 10 C -0.10 -2.01 5.52 -26.73 -0.15 -2.16 16 11 C 0.06 0.95 4.74 37.16 0.18 1.13 16 12 O -0.31 -5.19 9.27 -19.42 -0.18 -5.37 16 13 C 0.16 2.35 6.66 -39.22 -0.26 2.09 16 14 C -0.21 -2.83 9.04 -39.43 -0.36 -3.19 16 15 C -0.07 -0.83 10.04 -39.60 -0.40 -1.23 16 16 C -0.17 -1.73 10.04 -39.56 -0.40 -2.13 16 17 C -0.07 -0.73 9.68 -39.61 -0.38 -1.11 16 18 C -0.12 -1.56 4.39 -104.47 -0.46 -2.02 16 19 C -0.06 -0.66 5.66 -29.03 -0.16 -0.83 16 20 C 0.48 6.05 8.32 36.00 0.30 6.35 16 21 O -0.51 -8.24 16.79 -18.75 -0.31 -8.55 16 22 O -0.52 -5.17 13.42 -39.24 -0.53 -5.70 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 24 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 25 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 0.92 7.66 -51.93 -0.40 0.52 16 29 H 0.06 0.96 7.66 -51.93 -0.40 0.56 16 30 H 0.13 1.67 6.30 -52.49 -0.33 1.34 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.11 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.12 1.30 7.69 -51.93 -0.40 0.90 16 36 H 0.41 2.49 9.10 45.56 0.41 2.91 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -34.34 312.93 -6.83 -41.17 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.00 Total: 0.66 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -2.63 Total: -16.77 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.77 Total: -27.00 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -1.02 Total: -19.62 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.34 -6.83 -41.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157365485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.667 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds