Wall clock time and date at job start Mon Mar 30 2020 06:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48496 * 109.47125 * 270.00489 * 3 2 1 5 5 H 1.48498 * 109.47295 * 30.00473 * 3 2 1 6 6 H 1.48504 * 109.46933 * 150.00494 * 3 2 1 7 7 C 1.37875 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99395 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00035 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46884 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46786 * 180.02562 * 10 9 7 12 12 O 1.42903 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.35899 * 116.99930 * 180.02562 * 12 11 10 14 14 C 1.38747 * 120.05586 * 359.97438 * 13 12 11 15 15 C 1.38125 * 119.94590 * 180.02562 * 14 13 12 16 16 C 1.38289 * 120.05159 * 359.97438 * 15 14 13 17 17 C 1.38243 * 120.11362 * 0.02562 * 16 15 14 18 18 C 1.38163 * 120.05438 * 359.97438 * 17 16 15 19 19 C 1.50708 * 120.02715 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47325 * 265.02667 * 19 18 17 21 21 O 1.20824 * 119.99697 * 359.97438 * 20 19 18 22 22 O 1.34222 * 120.00261 * 180.02562 * 20 19 18 23 23 H 0.96998 * 119.99590 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47303 * 59.99684 * 9 7 2 25 25 H 1.09003 * 109.46742 * 299.99481 * 9 7 2 26 26 H 1.08993 * 109.47093 * 59.99926 * 10 9 7 27 27 H 1.09003 * 109.46925 * 299.99268 * 10 9 7 28 28 H 1.08998 * 109.47474 * 59.99538 * 11 10 9 29 29 H 1.08995 * 109.46823 * 299.99558 * 11 10 9 30 30 H 1.08000 * 120.03046 * 0.02562 * 14 13 12 31 31 H 1.07993 * 119.97844 * 179.72247 * 15 14 13 32 32 H 1.08004 * 119.94567 * 179.97438 * 16 15 14 33 33 H 1.08001 * 119.97538 * 179.97438 * 17 16 15 34 34 H 1.08995 * 109.47041 * 25.02760 * 19 18 17 35 35 H 1.08999 * 109.47067 * 145.02382 * 19 18 17 36 36 H 0.96695 * 117.00358 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 8 6.0279 -3.9838 -0.0027 13 6 7.3752 -4.1618 -0.0022 14 6 8.2215 -3.0623 -0.0018 15 6 9.5905 -3.2458 -0.0018 16 6 10.1178 -4.5242 -0.0017 17 6 9.2767 -5.6214 -0.0021 18 6 7.9067 -5.4430 -0.0021 19 6 6.9904 -6.6396 -0.0031 20 6 6.5873 -6.9624 -1.4188 21 8 7.0012 -6.2896 -2.3331 22 8 5.7677 -7.9967 -1.6640 23 1 -0.4849 0.8401 0.0004 24 1 3.8753 -0.6803 0.8888 25 1 3.8745 -0.6800 -0.8912 26 1 3.6579 -3.1497 -0.8924 27 1 3.6586 -3.1509 0.8876 28 1 5.9149 -2.1233 0.8881 29 1 5.9149 -2.1220 -0.8918 30 1 7.8101 -2.0637 -0.0014 31 1 10.2496 -2.3904 -0.0060 32 1 11.1885 -4.6658 -0.0021 33 1 9.6909 -6.6188 -0.0024 34 1 7.5087 -7.4945 0.4310 35 1 6.1009 -6.4165 0.5861 36 1 5.5376 -8.1650 -2.5880 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157365485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:30 Heat of formation + Delta-G solvation = -144.368243 kcal Electronic energy + Delta-G solvation = -19215.954936 eV Core-core repulsion = 16049.895274 eV Total energy + Delta-G solvation = -3166.059662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.61757 -40.71733 -38.56239 -37.05636 -35.99646 -34.16005 -33.72044 -31.00711 -29.51585 -28.61904 -25.32975 -23.78558 -22.93233 -22.18987 -21.43887 -19.12260 -19.08387 -18.80539 -17.56945 -17.29340 -17.10456 -16.60404 -16.38638 -16.22821 -15.34923 -15.12565 -14.79291 -14.54178 -14.29754 -13.99650 -13.69126 -13.40979 -13.27385 -12.85492 -12.70320 -12.51568 -12.32907 -12.16166 -11.88765 -11.81628 -11.71244 -11.64205 -11.47701 -11.37152 -10.79232 -9.85018 -9.11099 -8.31734 -6.37476 0.30492 0.51247 1.26514 1.35996 1.37760 1.49530 2.21104 2.22645 2.34754 2.92377 3.03387 3.61281 3.84117 3.96688 4.00033 4.17934 4.26160 4.34401 4.38647 4.52053 4.55840 4.60966 4.66721 4.72640 4.86258 4.93390 5.10056 5.36257 5.41480 5.46575 5.46789 5.58452 5.59828 5.64693 5.89871 6.23854 6.44301 6.70385 7.02420 7.27122 8.85206 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.004321 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.075835 B = 6478.493903 C = 7500.055176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.241 1.241 7 C -0.538 4.538 8 H 0.030 0.970 9 C -0.006 4.006 10 C -0.093 4.093 11 C 0.069 3.931 12 O -0.331 6.331 13 C 0.121 3.879 14 C -0.227 4.227 15 C -0.080 4.080 16 C -0.162 4.162 17 C -0.070 4.070 18 C -0.134 4.134 19 C -0.063 4.063 20 C 0.483 3.517 21 O -0.550 6.550 22 O -0.514 6.514 23 H 0.268 0.732 24 H 0.030 0.970 25 H 0.024 0.976 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.131 0.869 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.847 -12.588 0.981 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.165 1.165 7 C -0.576 4.576 8 H 0.048 0.952 9 C -0.043 4.043 10 C -0.131 4.131 11 C -0.005 4.005 12 O -0.245 6.245 13 C 0.076 3.924 14 C -0.246 4.246 15 C -0.098 4.098 16 C -0.180 4.180 17 C -0.088 4.088 18 C -0.135 4.135 19 C -0.100 4.100 20 C 0.327 3.673 21 O -0.441 6.441 22 O -0.328 6.328 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.166 0.834 32 H 0.171 0.829 33 H 0.175 0.825 34 H 0.168 0.832 35 H 0.133 0.867 36 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 22.736 -12.376 1.141 25.911 hybrid contribution -0.759 0.939 -0.852 1.477 sum 21.977 -11.438 0.289 24.777 Atomic orbital electron populations 1.70073 1.08427 1.28336 1.52321 1.26055 0.95666 1.03699 0.93850 0.85613 0.79652 0.77831 0.79301 1.19155 1.20826 1.16459 1.21421 0.91907 0.93257 1.51000 0.95163 1.19424 0.94150 0.93482 0.97275 1.21285 0.91625 0.98425 1.01746 1.22901 0.95007 0.80780 1.01862 1.86000 1.19572 1.30558 1.88345 1.19232 0.82470 0.94814 0.95907 1.21501 0.95428 0.98206 1.09449 1.21322 0.93749 0.98859 0.95856 1.21396 1.01267 0.91876 1.03473 1.21224 0.90649 1.00950 0.95990 1.18910 0.94826 0.90820 1.08915 1.20160 1.01425 0.98288 0.90084 1.23766 0.74249 0.76349 0.92912 1.90717 1.54460 1.50557 1.48341 1.84487 1.61673 1.48354 1.38259 0.92360 0.95123 0.95791 0.93186 0.92212 0.90711 0.91834 0.85092 0.83437 0.82863 0.82520 0.83200 0.86669 0.71387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 2 C 0.00 0.24 5.47 84.65 0.46 0.71 16 3 Si 0.95 43.87 27.47 68.60 1.88 45.75 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.24 -10.09 6.54 99.48 0.65 -9.43 16 7 C -0.54 -31.51 9.66 25.60 0.25 -31.27 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C -0.01 -0.27 4.04 29.85 0.12 -0.15 16 10 C -0.09 -3.78 5.52 30.60 0.17 -3.61 16 11 C 0.07 2.29 4.74 71.98 0.34 2.63 16 12 O -0.33 -10.99 9.27 -92.41 -0.86 -11.85 16 13 C 0.12 3.51 6.66 22.50 0.15 3.66 16 14 C -0.23 -5.82 9.04 22.36 0.20 -5.62 16 15 C -0.08 -1.60 10.04 22.25 0.22 -1.38 16 16 C -0.16 -2.82 10.04 22.28 0.22 -2.60 16 17 C -0.07 -1.31 9.68 22.25 0.22 -1.09 16 18 C -0.13 -3.22 4.39 -19.77 -0.09 -3.30 16 19 C -0.06 -1.26 5.66 29.10 0.16 -1.09 16 20 C 0.48 11.76 8.32 71.23 0.59 12.35 16 21 O -0.55 -17.79 16.79 21.97 0.37 -17.42 16 22 O -0.51 -9.64 13.42 -51.34 -0.69 -10.32 16 23 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 24 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 25 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 2.22 7.66 -2.39 -0.02 2.20 16 29 H 0.06 2.02 7.66 -2.39 -0.02 2.00 16 30 H 0.13 3.19 6.30 -2.91 -0.02 3.18 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.15 1.73 8.05 -2.39 -0.02 1.71 16 35 H 0.12 2.43 7.69 -2.39 -0.02 2.41 16 36 H 0.42 4.77 9.10 -74.06 -0.67 4.09 16 Total: -1.00 -76.51 312.93 4.39 -72.12 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.36 Total: 12.42 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 3.03 Total: -30.76 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.30 Total: -59.93 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.18 Total: -39.60 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -76.51 4.39 -72.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157365485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.252 kcal (2) G-P(sol) polarization free energy of solvation -76.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds