Wall clock time and date at job start Mon Mar 30 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48503 * 109.47291 * 239.99770 * 3 2 1 5 5 H 1.48498 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47258 * 119.99708 * 3 2 1 7 7 C 1.37880 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00406 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99546 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46679 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46815 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47116 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47265 * 180.02562 * 12 11 10 14 14 C 1.35694 * 117.00093 * 179.97438 * 13 12 11 15 15 C 1.39021 * 119.90499 * 0.27444 * 14 13 12 16 16 C 1.37679 * 120.09068 * 180.28089 * 15 14 13 17 17 C 1.39794 * 119.90398 * 359.43972 * 16 15 14 18 18 C 1.47473 * 120.08904 * 180.29757 * 17 16 15 19 19 O 1.21498 * 120.00032 * 0.02562 * 18 17 16 20 20 O 1.34752 * 119.99783 * 180.02562 * 18 17 16 21 21 C 1.39784 * 119.81736 * 0.28441 * 17 16 15 22 22 C 1.37681 * 119.90771 * 359.97438 * 21 17 16 23 23 H 0.97006 * 120.00156 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47307 * 60.00770 * 9 7 2 25 25 H 1.08992 * 109.47600 * 300.00273 * 9 7 2 26 26 H 1.08992 * 109.47429 * 60.00229 * 10 9 7 27 27 H 1.09000 * 109.46962 * 300.00034 * 10 9 7 28 28 H 1.09000 * 109.47152 * 59.99972 * 11 10 9 29 29 H 1.09000 * 109.47011 * 299.99548 * 11 10 9 30 30 H 1.09000 * 109.46683 * 59.99674 * 12 11 10 31 31 H 1.09000 * 109.46810 * 299.99669 * 12 11 10 32 32 H 1.07998 * 119.95278 * 359.97438 * 15 14 13 33 33 H 1.08002 * 120.04953 * 179.72504 * 16 15 14 34 34 H 0.96703 * 116.99904 * 180.02562 * 20 18 17 35 35 H 1.08005 * 120.04680 * 180.02562 * 21 17 16 36 36 H 1.08000 * 119.95490 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 6 2.4744 -6.1501 0.0050 13 8 1.7599 -7.3876 0.0049 14 6 2.4989 -8.5257 0.0057 15 6 3.8871 -8.4506 0.0124 16 6 4.6407 -9.6029 0.0075 17 6 4.0080 -10.8494 0.0076 18 6 4.8112 -12.0862 0.0089 19 8 6.0245 -12.0226 0.0104 20 8 4.1994 -13.2869 0.0085 21 6 2.6119 -10.9203 0.0066 22 6 1.8658 -9.7632 0.0062 23 1 -0.4851 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8918 26 1 2.8719 -3.6036 0.8926 27 1 2.8719 -3.6051 -0.8873 28 1 0.8538 -5.0454 -0.8869 29 1 0.8533 -5.0443 0.8931 30 1 3.1004 -6.0915 0.8954 31 1 3.1016 -6.0931 -0.8847 32 1 4.3750 -7.4872 0.0165 33 1 5.7191 -9.5438 0.0082 34 1 4.7678 -14.0692 0.0098 35 1 2.1192 -11.8815 0.0071 36 1 0.7871 -9.8171 0.0059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169579066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:46 Heat of formation + Delta-G solvation = -129.419408 kcal Electronic energy + Delta-G solvation = -18217.350392 eV Core-core repulsion = 15051.938960 eV Total energy + Delta-G solvation = -3165.411431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.80083 -39.94454 -37.60701 -36.35499 -34.84643 -32.54758 -31.45376 -30.75280 -28.88305 -25.42108 -24.45140 -23.24427 -21.65704 -21.29390 -20.22455 -18.48294 -18.29132 -17.36627 -16.32659 -16.31072 -15.90107 -15.87232 -14.91605 -14.53170 -14.27923 -14.22683 -13.86411 -13.46110 -12.82176 -12.79503 -12.52108 -11.94345 -11.91258 -11.70311 -11.62931 -11.10489 -10.95804 -10.93122 -10.63673 -10.56635 -10.51898 -9.76970 -9.42579 -9.41359 -9.13030 -8.56723 -8.37897 -6.02914 -4.05855 0.47259 1.01848 2.27716 2.73188 3.02149 3.31225 3.35902 3.38128 3.47589 4.43117 4.43899 4.52685 4.77938 4.89658 5.06440 5.06547 5.16450 5.23916 5.32831 5.44682 5.66457 5.80315 5.90139 5.95545 5.97475 6.02234 6.16356 6.29843 6.35198 6.62124 6.77136 7.00363 7.21420 7.59373 7.62992 7.76438 7.96401 8.38032 9.00969 9.58376 11.08329 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.056167 B = 0.002492 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.394692 B =11233.089532 C =11700.431982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.107 4.107 11 C -0.118 4.118 12 C 0.055 3.945 13 O -0.306 6.306 14 C 0.180 3.820 15 C -0.226 4.226 16 C -0.008 4.008 17 C -0.184 4.184 18 C 0.532 3.468 19 O -0.522 6.522 20 O -0.515 6.515 21 C -0.020 4.020 22 C -0.173 4.173 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.413 0.587 35 H 0.143 0.857 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.917 -24.044 0.020 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.155 4.155 12 C -0.019 4.019 13 O -0.218 6.218 14 C 0.132 3.868 15 C -0.244 4.244 16 C -0.027 4.027 17 C -0.185 4.185 18 C 0.378 3.622 19 O -0.412 6.412 20 O -0.327 6.327 21 C -0.038 4.038 22 C -0.191 4.191 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.271 0.729 35 H 0.161 0.839 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.615 -23.503 0.020 24.165 hybrid contribution 1.059 0.540 -0.001 1.189 sum 6.675 -22.963 0.020 23.914 Atomic orbital electron populations 1.69951 1.06065 1.26779 1.50616 1.25033 0.94866 0.99300 0.95285 0.86648 0.79576 0.83088 0.78620 1.20236 1.21267 1.20230 1.21207 0.92990 0.91078 1.50901 0.92729 1.19084 0.93931 0.91075 0.97435 1.21593 0.99303 0.93003 1.00596 1.21721 0.98003 0.92390 1.03395 1.23247 0.96262 0.80885 1.01544 1.86112 1.36368 1.13100 1.86259 1.19506 0.90106 0.87279 0.89890 1.21325 0.92800 0.99976 1.10325 1.21037 1.00642 0.89917 0.91081 1.18859 0.93381 0.90456 1.15812 1.20807 0.85971 0.83666 0.71754 1.90889 1.15384 1.87874 1.47083 1.84564 1.45347 1.16723 1.86027 1.21225 0.92061 0.98593 0.91918 1.20475 1.01187 0.89181 1.08288 0.92891 0.96446 0.96457 0.93065 0.93071 0.91159 0.91168 0.91649 0.91660 0.84071 0.84275 0.72882 0.83895 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.06 5.15 -26.73 -0.14 -2.20 16 11 C -0.12 -1.87 5.58 -26.73 -0.15 -2.02 16 12 C 0.05 0.71 4.73 37.16 0.18 0.89 16 13 O -0.31 -4.08 10.12 -18.79 -0.19 -4.27 16 14 C 0.18 2.10 6.70 -39.00 -0.26 1.84 16 15 C -0.23 -2.41 9.01 -39.50 -0.36 -2.76 16 16 C -0.01 -0.09 9.59 -39.20 -0.38 -0.46 16 17 C -0.18 -1.88 5.87 -104.98 -0.62 -2.49 16 18 C 0.53 5.39 8.26 34.49 0.29 5.67 16 19 O -0.52 -6.72 17.12 -19.26 -0.33 -7.05 16 20 O -0.51 -3.55 12.67 -40.63 -0.51 -4.06 16 21 C -0.02 -0.18 9.61 -39.21 -0.38 -0.55 16 22 C -0.17 -1.72 9.97 -39.50 -0.39 -2.12 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.78 7.64 -51.93 -0.40 0.38 16 31 H 0.07 0.77 7.66 -51.93 -0.40 0.38 16 32 H 0.14 1.34 6.28 -52.49 -0.33 1.01 16 33 H 0.14 1.34 7.64 -52.49 -0.40 0.94 16 34 H 0.41 1.02 9.11 45.56 0.42 1.44 16 35 H 0.14 0.97 7.60 -52.48 -0.40 0.57 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -32.60 316.98 -7.31 -39.91 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.01 Total: -2.52 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -2.76 Total: -17.22 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -1.03 Total: -15.38 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.60 -7.31 -39.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169579066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.507 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds