Wall clock time and date at job start Mon Mar 30 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48503 * 109.47291 * 239.99770 * 3 2 1 5 5 H 1.48498 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47258 * 119.99708 * 3 2 1 7 7 C 1.37880 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00406 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99546 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46679 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46815 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47116 * 180.02562 * 11 10 9 13 13 O 1.42899 * 109.47265 * 180.02562 * 12 11 10 14 14 C 1.35694 * 117.00093 * 179.97438 * 13 12 11 15 15 C 1.39021 * 119.90499 * 0.27444 * 14 13 12 16 16 C 1.37679 * 120.09068 * 180.28089 * 15 14 13 17 17 C 1.39794 * 119.90398 * 359.43972 * 16 15 14 18 18 C 1.47473 * 120.08904 * 180.29757 * 17 16 15 19 19 O 1.21498 * 120.00032 * 0.02562 * 18 17 16 20 20 O 1.34752 * 119.99783 * 180.02562 * 18 17 16 21 21 C 1.39784 * 119.81736 * 0.28441 * 17 16 15 22 22 C 1.37681 * 119.90771 * 359.97438 * 21 17 16 23 23 H 0.97006 * 120.00156 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47307 * 60.00770 * 9 7 2 25 25 H 1.08992 * 109.47600 * 300.00273 * 9 7 2 26 26 H 1.08992 * 109.47429 * 60.00229 * 10 9 7 27 27 H 1.09000 * 109.46962 * 300.00034 * 10 9 7 28 28 H 1.09000 * 109.47152 * 59.99972 * 11 10 9 29 29 H 1.09000 * 109.47011 * 299.99548 * 11 10 9 30 30 H 1.09000 * 109.46683 * 59.99674 * 12 11 10 31 31 H 1.09000 * 109.46810 * 299.99669 * 12 11 10 32 32 H 1.07998 * 119.95278 * 359.97438 * 15 14 13 33 33 H 1.08002 * 120.04953 * 179.72504 * 16 15 14 34 34 H 0.96703 * 116.99904 * 180.02562 * 20 18 17 35 35 H 1.08005 * 120.04680 * 180.02562 * 21 17 16 36 36 H 1.08000 * 119.95490 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 6 2.4744 -6.1501 0.0050 13 8 1.7599 -7.3876 0.0049 14 6 2.4989 -8.5257 0.0057 15 6 3.8871 -8.4506 0.0124 16 6 4.6407 -9.6029 0.0075 17 6 4.0080 -10.8494 0.0076 18 6 4.8112 -12.0862 0.0089 19 8 6.0245 -12.0226 0.0104 20 8 4.1994 -13.2869 0.0085 21 6 2.6119 -10.9203 0.0066 22 6 1.8658 -9.7632 0.0062 23 1 -0.4851 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8918 26 1 2.8719 -3.6036 0.8926 27 1 2.8719 -3.6051 -0.8873 28 1 0.8538 -5.0454 -0.8869 29 1 0.8533 -5.0443 0.8931 30 1 3.1004 -6.0915 0.8954 31 1 3.1016 -6.0931 -0.8847 32 1 4.3750 -7.4872 0.0165 33 1 5.7191 -9.5438 0.0082 34 1 4.7678 -14.0692 0.0098 35 1 2.1192 -11.8815 0.0071 36 1 0.7871 -9.8171 0.0059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169579066.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:46 Heat of formation + Delta-G solvation = -149.308755 kcal Electronic energy + Delta-G solvation = -18218.212858 eV Core-core repulsion = 15051.938960 eV Total energy + Delta-G solvation = -3166.273898 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.59033 -40.77868 -38.46916 -37.06835 -36.48847 -34.43621 -32.25586 -31.72368 -30.41874 -27.01200 -25.30830 -24.47251 -22.87833 -22.10796 -21.76936 -19.31282 -19.07210 -18.42398 -18.15602 -17.35408 -16.84369 -16.63380 -16.47982 -15.67672 -15.61286 -15.10477 -14.67168 -14.49249 -14.24611 -13.94985 -13.72728 -13.49596 -13.08777 -13.03919 -12.69833 -12.54292 -12.41536 -12.33609 -11.84858 -11.80433 -11.74040 -11.39036 -11.34582 -11.14038 -10.54455 -10.17186 -9.41016 -8.19622 -6.30860 -0.32157 0.26821 1.40925 1.43749 1.49792 1.51645 2.03758 2.13514 2.42016 2.70443 3.13656 3.65559 3.78985 3.95627 3.97323 4.10672 4.18011 4.32647 4.35511 4.48651 4.53817 4.66980 4.79179 4.93739 5.09657 5.11010 5.19895 5.24596 5.25762 5.28195 5.53324 5.57787 5.58446 5.75610 5.86578 6.24408 6.29971 6.86827 6.98055 7.38558 8.92043 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.056167 B = 0.002492 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.394692 B =11233.089532 C =11700.431982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.110 4.110 12 C 0.063 3.937 13 O -0.321 6.321 14 C 0.159 3.841 15 C -0.227 4.227 16 C -0.016 4.016 17 C -0.193 4.193 18 C 0.538 3.462 19 O -0.555 6.555 20 O -0.504 6.504 21 C -0.010 4.010 22 C -0.175 4.175 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.433 0.567 35 H 0.168 0.832 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 -25.062 0.022 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.148 4.148 12 C -0.011 4.011 13 O -0.234 6.234 14 C 0.113 3.887 15 C -0.246 4.246 16 C -0.034 4.034 17 C -0.194 4.194 18 C 0.385 3.615 19 O -0.449 6.449 20 O -0.318 6.318 21 C -0.028 4.028 22 C -0.193 4.193 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.295 0.705 35 H 0.186 0.814 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.767 -24.567 0.023 25.482 hybrid contribution 0.655 0.727 -0.001 0.979 sum 7.423 -23.840 0.021 24.969 Atomic orbital electron populations 1.70093 1.07847 1.27830 1.51688 1.26013 0.95783 1.03481 0.94814 0.85500 0.78249 0.78063 0.79231 1.19111 1.21017 1.19102 1.21709 0.93678 0.92368 1.50484 0.91890 1.19024 0.94546 0.93123 0.94905 1.21352 0.98079 0.92372 1.01410 1.21493 0.98199 0.92295 1.02790 1.23029 0.95131 0.80055 1.02929 1.86050 1.36914 1.13471 1.87002 1.19737 0.90559 0.87144 0.91309 1.21425 0.92537 1.00539 1.10083 1.21146 1.00930 0.90128 0.91244 1.19068 0.94092 0.90615 1.15655 1.20767 0.85365 0.84425 0.70913 1.90880 1.16730 1.88435 1.48811 1.84513 1.45448 1.16655 1.85154 1.21449 0.91479 0.99316 0.90558 1.20715 1.02044 0.88859 1.07716 0.92797 0.99023 0.99030 0.92176 0.92186 0.91841 0.91849 0.90286 0.90304 0.83183 0.83971 0.70508 0.81438 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.59 9.11 25.60 0.23 -30.35 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.09 4.97 29.85 0.15 1.24 16 10 C -0.09 -3.60 5.15 30.60 0.16 -3.44 16 11 C -0.11 -3.47 5.58 30.60 0.17 -3.30 16 12 C 0.06 1.54 4.73 71.98 0.34 1.88 16 13 O -0.32 -8.19 10.12 -90.13 -0.91 -9.10 16 14 C 0.16 3.49 6.70 22.64 0.15 3.65 16 15 C -0.23 -4.54 9.01 22.33 0.20 -4.33 16 16 C -0.02 -0.32 9.59 22.51 0.22 -0.10 16 17 C -0.19 -3.61 5.87 -20.09 -0.12 -3.73 16 18 C 0.54 9.99 8.26 70.26 0.58 10.57 16 19 O -0.56 -13.77 17.12 19.84 0.34 -13.43 16 20 O -0.50 -5.65 12.67 -56.62 -0.72 -6.36 16 21 C -0.01 -0.16 9.61 22.51 0.22 0.06 16 22 C -0.17 -3.16 9.97 22.32 0.22 -2.94 16 23 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 24 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 30 H 0.08 1.72 7.64 -2.39 -0.02 1.70 16 31 H 0.08 1.72 7.66 -2.39 -0.02 1.70 16 32 H 0.15 2.61 6.28 -2.91 -0.02 2.59 16 33 H 0.14 2.63 7.64 -2.91 -0.02 2.61 16 34 H 0.43 1.02 9.11 -74.05 -0.67 0.35 16 35 H 0.17 1.73 7.60 -2.91 -0.02 1.71 16 36 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -70.33 316.98 4.42 -65.91 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 0.41 Total: 4.23 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 2.98 Total: -30.54 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.28 Total: -56.61 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.29 Total: -28.89 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.33 4.42 -65.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169579066.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.395 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds