Wall clock time and date at job start Mon Mar 30 2020 06:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46947 * 2 1 4 4 C 1.35177 * 125.48125 * 90.01089 * 3 2 1 5 5 C 1.40282 * 107.20915 * 179.72585 * 4 3 2 6 6 C 1.38006 * 106.52494 * 0.38238 * 5 4 3 7 7 C 1.41524 * 126.10684 * 179.88378 * 6 5 4 8 8 C 1.35761 * 119.99994 * 179.70929 * 7 6 5 9 9 C 1.41296 * 119.99927 * 180.02562 * 8 7 6 10 10 O 1.21713 * 120.00076 * 0.02562 * 9 8 7 11 11 O 1.34996 * 119.99955 * 179.72505 * 9 8 7 12 12 C 1.42896 * 116.99979 * 180.27382 * 11 9 8 13 13 C 1.53008 * 109.46889 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.46887 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00086 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99826 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00244 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47098 * 89.99698 * 18 16 14 20 20 H 1.48493 * 109.47342 * 210.00108 * 18 16 14 21 21 H 1.48508 * 109.46837 * 329.99792 * 18 16 14 22 22 O 1.34004 * 125.47606 * 269.97478 * 3 2 1 23 23 H 1.09002 * 109.47422 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47680 * 300.00441 * 1 2 3 25 25 H 1.09001 * 109.47326 * 60.00452 * 1 2 3 26 26 H 1.08994 * 109.47240 * 239.99716 * 2 1 3 27 27 H 1.09005 * 109.46652 * 119.99311 * 2 1 3 28 28 H 1.08000 * 126.39527 * 359.97041 * 4 3 2 29 29 H 1.08001 * 126.73808 * 180.27554 * 5 4 3 30 30 H 1.08002 * 120.00323 * 359.71576 * 7 6 5 31 31 H 1.07992 * 119.99679 * 0.02562 * 8 7 6 32 32 H 1.08992 * 109.47248 * 299.99898 * 12 11 9 33 33 H 1.08996 * 109.47077 * 60.00411 * 12 11 9 34 34 H 1.08998 * 109.47272 * 300.00335 * 13 12 11 35 35 H 1.09004 * 109.46829 * 60.00556 * 13 12 11 36 36 H 0.96993 * 120.00265 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2940 2.1606 1.1008 5 6 2.7439 3.4144 0.6609 6 6 2.7248 3.3765 -0.7185 7 6 3.0983 4.4297 -1.5869 8 6 3.0366 4.2548 -2.9318 9 6 3.4100 5.3061 -3.7988 10 8 3.7875 6.3684 -3.3400 11 8 3.3539 5.1303 -5.1361 12 6 3.7518 6.2334 -5.9527 13 6 3.6212 5.8490 -7.4279 14 6 4.0402 7.0126 -8.2891 15 1 4.3673 7.9339 -7.8302 16 6 4.0060 6.9010 -9.6630 17 7 3.6072 5.7793 -10.2218 18 14 4.5260 8.3429 -10.7305 19 1 5.9821 8.2537 -11.0079 20 1 3.7750 8.3071 -12.0110 21 1 4.2343 9.6146 -10.0210 22 8 2.2919 2.1540 -1.0913 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.1818 1.8439 2.1272 29 1 3.0445 4.2465 1.2803 30 1 3.4326 5.3726 -1.1798 31 1 2.7021 3.3121 -3.3388 32 1 3.1117 7.0902 -5.7429 33 1 4.7880 6.4918 -5.7345 34 1 4.2610 4.9920 -7.6381 35 1 2.5848 5.5909 -7.6458 36 1 3.5827 5.7008 -11.1883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184395851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:23 Heat of formation + Delta-G solvation = -76.748064 kcal Electronic energy + Delta-G solvation = -18274.568505 eV Core-core repulsion = 15111.441074 eV Total energy + Delta-G solvation = -3163.127431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.88284 -40.04528 -36.47700 -34.98371 -33.95543 -33.30712 -32.85055 -30.33171 -28.71686 -25.75863 -24.55320 -22.93779 -22.07775 -21.03438 -20.61456 -19.50009 -17.79882 -16.75665 -16.42241 -16.21593 -15.92708 -15.84159 -15.08084 -14.73645 -14.49835 -13.51937 -13.33285 -13.29929 -13.26906 -12.88996 -12.62275 -12.35040 -12.23150 -11.91568 -11.46825 -11.26546 -11.01279 -10.84168 -10.70862 -10.67679 -10.30609 -10.09440 -9.58780 -9.55726 -9.27183 -8.41679 -8.12889 -6.07654 -4.11732 0.18729 1.79854 2.41945 2.52658 3.30418 3.33436 3.34407 3.37445 3.44637 4.25081 4.41396 4.54869 4.61600 4.75063 4.80079 4.99582 5.02645 5.28825 5.32008 5.35986 5.38334 5.43353 5.52960 5.70475 5.81387 5.88628 6.08368 6.14444 6.16033 6.20480 6.69182 6.81685 7.01702 7.59197 7.66301 7.89652 8.21791 8.30572 8.93934 9.52402 11.04024 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.039495 B = 0.002745 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.782618 B =10197.196136 C =10807.743311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.048 4.048 3 C 0.012 3.988 4 C -0.216 4.216 5 C -0.158 4.158 6 C -0.009 4.009 7 C 0.008 3.992 8 C -0.177 4.177 9 C 0.491 3.509 10 O -0.522 6.522 11 O -0.347 6.347 12 C 0.072 3.928 13 C 0.025 3.975 14 C -0.525 4.525 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 O -0.159 6.159 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.163 0.837 31 H 0.141 0.859 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 -11.349 23.596 26.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 C -0.040 4.040 4 C -0.235 4.235 5 C -0.178 4.178 6 C -0.058 4.058 7 C -0.010 4.010 8 C -0.196 4.196 9 C 0.338 3.662 10 O -0.415 6.415 11 O -0.262 6.262 12 C -0.001 4.001 13 C -0.012 4.012 14 C -0.564 4.564 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 O -0.055 6.055 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.170 0.830 29 H 0.175 0.825 30 H 0.180 0.820 31 H 0.159 0.841 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.573 -11.204 23.181 26.150 hybrid contribution 0.366 0.951 -0.522 1.145 sum -4.207 -10.253 22.659 25.224 Atomic orbital electron populations 1.21802 0.93576 1.02609 1.02898 1.20194 0.96656 0.87198 1.04504 1.22791 1.01952 0.95186 0.84040 1.21498 1.07874 0.94596 0.99512 1.22346 1.03205 0.99149 0.93055 1.19747 1.07405 0.85249 0.93436 1.20688 0.93044 0.95413 0.91869 1.21496 1.05212 1.00054 0.92820 1.19765 0.75818 0.87442 0.83144 1.90857 1.44317 1.28529 1.77792 1.86260 1.77831 1.45351 1.16799 1.23239 0.98901 0.86039 0.91955 1.19174 0.98753 0.97968 0.85348 1.21000 1.45243 0.99058 0.91062 0.92243 1.24991 0.95075 0.96143 0.98011 1.69972 1.46783 1.25391 1.10793 0.86469 0.78637 0.82483 0.79704 1.20487 1.21065 1.19721 1.84074 1.64473 1.22272 1.34717 0.91383 0.92105 0.91984 0.89629 0.88596 0.83000 0.82504 0.82018 0.84074 0.92513 0.92513 0.95366 0.95356 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.05 -0.29 6.46 -27.88 -0.18 -0.47 16 3 C 0.01 0.11 6.56 -35.40 -0.23 -0.12 16 4 C -0.22 -1.82 10.76 -39.90 -0.43 -2.25 16 5 C -0.16 -1.48 10.90 -38.90 -0.42 -1.91 16 6 C -0.01 -0.11 6.84 -38.42 -0.26 -0.37 16 7 C 0.01 0.10 9.39 -39.22 -0.37 -0.27 16 8 C -0.18 -2.57 9.55 -39.31 -0.38 -2.94 16 9 C 0.49 9.11 7.68 31.89 0.25 9.35 16 10 O -0.52 -10.61 15.88 -19.43 -0.31 -10.92 16 11 O -0.35 -7.36 10.10 -41.31 -0.42 -7.77 16 12 C 0.07 1.67 5.32 37.16 0.20 1.87 16 13 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 14 C -0.53 -15.11 9.11 -34.44 -0.31 -15.42 16 15 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 18 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 O -0.16 -1.87 10.18 4.71 0.05 -1.82 16 23 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.16 1.81 7.46 -52.49 -0.39 1.42 16 31 H 0.14 1.90 7.72 -52.49 -0.41 1.50 16 32 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 33 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -32.78 324.16 -7.09 -39.86 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -4.99 Total: -4.00 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -2.02 Total: -10.84 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.68 Total: -20.51 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.78 -7.09 -39.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184395851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.883 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds