Wall clock time and date at job start Mon Mar 30 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46947 * 2 1 4 4 C 1.35177 * 125.48125 * 90.01089 * 3 2 1 5 5 C 1.40282 * 107.20915 * 179.72585 * 4 3 2 6 6 C 1.38006 * 106.52494 * 0.38238 * 5 4 3 7 7 C 1.41524 * 126.10684 * 179.88378 * 6 5 4 8 8 C 1.35761 * 119.99994 * 179.70929 * 7 6 5 9 9 C 1.41296 * 119.99927 * 180.02562 * 8 7 6 10 10 O 1.21713 * 120.00076 * 0.02562 * 9 8 7 11 11 O 1.34996 * 119.99955 * 179.72505 * 9 8 7 12 12 C 1.42896 * 116.99979 * 180.27382 * 11 9 8 13 13 C 1.53008 * 109.46889 * 180.02562 * 12 11 9 14 14 C 1.50698 * 109.46887 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00086 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99826 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00244 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47098 * 89.99698 * 18 16 14 20 20 H 1.48493 * 109.47342 * 210.00108 * 18 16 14 21 21 H 1.48508 * 109.46837 * 329.99792 * 18 16 14 22 22 O 1.34004 * 125.47606 * 269.97478 * 3 2 1 23 23 H 1.09002 * 109.47422 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47680 * 300.00441 * 1 2 3 25 25 H 1.09001 * 109.47326 * 60.00452 * 1 2 3 26 26 H 1.08994 * 109.47240 * 239.99716 * 2 1 3 27 27 H 1.09005 * 109.46652 * 119.99311 * 2 1 3 28 28 H 1.08000 * 126.39527 * 359.97041 * 4 3 2 29 29 H 1.08001 * 126.73808 * 180.27554 * 5 4 3 30 30 H 1.08002 * 120.00323 * 359.71576 * 7 6 5 31 31 H 1.07992 * 119.99679 * 0.02562 * 8 7 6 32 32 H 1.08992 * 109.47248 * 299.99898 * 12 11 9 33 33 H 1.08996 * 109.47077 * 60.00411 * 12 11 9 34 34 H 1.08998 * 109.47272 * 300.00335 * 13 12 11 35 35 H 1.09004 * 109.46829 * 60.00556 * 13 12 11 36 36 H 0.96993 * 120.00265 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2940 2.1606 1.1008 5 6 2.7439 3.4144 0.6609 6 6 2.7248 3.3765 -0.7185 7 6 3.0983 4.4297 -1.5869 8 6 3.0366 4.2548 -2.9318 9 6 3.4100 5.3061 -3.7988 10 8 3.7875 6.3684 -3.3400 11 8 3.3539 5.1303 -5.1361 12 6 3.7518 6.2334 -5.9527 13 6 3.6212 5.8490 -7.4279 14 6 4.0402 7.0126 -8.2891 15 1 4.3673 7.9339 -7.8302 16 6 4.0060 6.9010 -9.6630 17 7 3.6072 5.7793 -10.2218 18 14 4.5260 8.3429 -10.7305 19 1 5.9821 8.2537 -11.0079 20 1 3.7750 8.3071 -12.0110 21 1 4.2343 9.6146 -10.0210 22 8 2.2919 2.1540 -1.0913 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 2.1818 1.8439 2.1272 29 1 3.0445 4.2465 1.2803 30 1 3.4326 5.3726 -1.1798 31 1 2.7021 3.3121 -3.3388 32 1 3.1117 7.0902 -5.7429 33 1 4.7880 6.4918 -5.7345 34 1 4.2610 4.9920 -7.6381 35 1 2.5848 5.5909 -7.6458 36 1 3.5827 5.7008 -11.1883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184395851.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:22 Heat of formation + Delta-G solvation = -94.842104 kcal Electronic energy + Delta-G solvation = -18275.353121 eV Core-core repulsion = 15111.441074 eV Total energy + Delta-G solvation = -3163.912047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.66412 -41.57773 -38.05537 -35.81118 -35.45461 -34.77942 -33.63196 -32.34680 -29.67735 -27.32255 -25.86883 -23.89952 -22.95873 -22.75626 -21.70728 -20.59690 -19.22767 -18.35709 -17.63468 -17.52450 -17.38860 -17.15830 -16.51136 -15.84566 -15.27955 -15.11128 -14.78801 -14.38684 -14.06291 -13.96296 -13.63537 -13.51261 -13.25911 -13.19898 -13.00645 -12.62454 -12.57181 -12.42179 -11.94925 -11.92674 -11.79742 -11.55966 -11.44508 -11.40420 -10.83225 -10.62577 -8.98946 -8.28124 -6.41815 -0.83739 0.93044 1.40169 1.42748 1.53507 1.54010 1.79868 1.91907 2.12586 2.40578 3.05978 3.56600 3.75371 3.89663 4.01803 4.08070 4.20956 4.22524 4.25580 4.33474 4.53140 4.57748 4.67578 4.77794 4.86270 4.98281 5.01732 5.08614 5.13745 5.25837 5.33120 5.43831 5.50526 5.52627 5.72803 6.04874 6.05892 6.69260 6.74102 7.27988 8.84932 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.039495 B = 0.002745 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.782618 B =10197.196136 C =10807.743311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C 0.017 3.983 4 C -0.222 4.222 5 C -0.129 4.129 6 C -0.059 4.059 7 C 0.059 3.941 8 C -0.224 4.224 9 C 0.495 3.505 10 O -0.548 6.548 11 O -0.362 6.362 12 C 0.088 3.912 13 C 0.030 3.970 14 C -0.551 4.551 15 H 0.066 0.934 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.977 3.023 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.262 1.262 22 O -0.183 6.183 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.124 0.876 28 H 0.184 0.816 29 H 0.185 0.815 30 H 0.174 0.826 31 H 0.143 0.857 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.005 0.995 35 H 0.005 0.995 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -11.495 26.034 28.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 C -0.035 4.035 4 C -0.241 4.241 5 C -0.148 4.148 6 C -0.107 4.107 7 C 0.041 3.959 8 C -0.243 4.243 9 C 0.346 3.654 10 O -0.443 6.443 11 O -0.278 6.278 12 C 0.015 3.985 13 C -0.007 4.007 14 C -0.588 4.588 15 H 0.084 0.916 16 C -0.195 4.195 17 N -0.568 5.568 18 Si 0.800 3.200 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.187 1.187 22 O -0.080 6.080 23 H 0.104 0.896 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.142 0.858 28 H 0.201 0.799 29 H 0.202 0.798 30 H 0.191 0.809 31 H 0.161 0.839 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.542 -11.357 25.642 28.410 hybrid contribution 0.275 0.782 -0.962 1.270 sum -4.267 -10.576 24.680 27.187 Atomic orbital electron populations 1.21797 0.93134 1.03590 1.02206 1.20431 0.96915 0.85521 1.05910 1.23640 0.99893 0.96167 0.83813 1.21944 1.07378 0.93948 1.00798 1.22856 0.99652 1.00079 0.92216 1.19787 1.11058 0.85603 0.94240 1.20871 0.88325 0.95748 0.90952 1.21193 1.10592 0.99456 0.93081 1.20283 0.74967 0.88115 0.82056 1.90826 1.46234 1.29645 1.77607 1.86238 1.78525 1.44558 1.18500 1.22760 0.99010 0.86474 0.90293 1.18998 0.96623 0.96988 0.88073 1.21388 1.45781 0.99683 0.91995 0.91593 1.26018 0.94680 0.99290 0.99482 1.70100 1.47517 1.27689 1.11468 0.85274 0.78543 0.78636 0.77548 1.19424 1.20276 1.18661 1.84078 1.65003 1.22720 1.36175 0.89633 0.91599 0.93854 0.89669 0.85760 0.79878 0.79814 0.80899 0.83922 0.92416 0.92380 0.97654 0.97654 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 71.98 0.71 -0.61 16 2 C -0.05 -0.47 6.46 29.85 0.19 -0.28 16 3 C 0.02 0.27 6.56 24.98 0.16 0.43 16 4 C -0.22 -2.93 10.76 22.06 0.24 -2.69 16 5 C -0.13 -2.00 10.90 22.71 0.25 -1.75 16 6 C -0.06 -1.26 6.84 23.02 0.16 -1.11 16 7 C 0.06 1.42 9.39 22.51 0.21 1.63 16 8 C -0.22 -6.75 9.55 22.45 0.21 -6.54 16 9 C 0.50 19.12 7.68 68.57 0.53 19.65 16 10 O -0.55 -22.81 15.88 19.14 0.30 -22.51 16 11 O -0.36 -16.15 10.10 -59.15 -0.60 -16.75 16 12 C 0.09 4.28 5.32 71.98 0.38 4.66 16 13 C 0.03 1.72 5.34 29.85 0.16 1.88 16 14 C -0.55 -32.37 9.11 25.60 0.23 -32.13 16 15 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 16 C 0.00 0.24 5.46 84.66 0.46 0.70 16 17 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 18 Si 0.98 44.61 29.54 68.60 2.03 46.63 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 22 O -0.18 -4.14 10.18 -6.05 -0.06 -4.20 16 23 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.17 3.66 7.46 -2.91 -0.02 3.64 16 31 H 0.14 4.13 7.72 -2.91 -0.02 4.10 16 32 H 0.06 2.74 8.13 -2.39 -0.02 2.72 16 33 H 0.06 2.75 8.13 -2.39 -0.02 2.73 16 34 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.01 0.30 8.14 -2.38 -0.02 0.29 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -72.45 324.16 6.92 -65.53 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.06 Total: 4.27 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 3.90 Total: -16.16 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.28 Total: -56.82 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -0.36 Total: -43.46 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -72.45 6.92 -65.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184395851.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.311 kcal (2) G-P(sol) polarization free energy of solvation -72.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds