Wall clock time and date at job start Mon Mar 30 2020 06:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46868 * 55.00595 * 3 2 1 5 5 C 1.50699 * 109.47061 * 175.00067 * 3 2 1 6 6 H 1.07999 * 120.00056 * 120.00101 * 5 3 2 7 7 C 1.37880 * 120.00172 * 300.00389 * 5 3 2 8 8 N 1.31513 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47173 * 119.99725 * 9 7 5 12 12 H 1.48502 * 109.47134 * 239.99840 * 9 7 5 13 13 O 1.45202 * 109.46961 * 295.00042 * 3 2 1 14 14 C 1.34710 * 116.99623 * 90.00461 * 13 3 2 15 15 O 1.21473 * 120.00082 * 359.97438 * 14 13 3 16 16 C 1.47734 * 119.99759 * 180.27325 * 14 13 3 17 17 C 1.39654 * 120.12618 * 359.44514 * 16 14 13 18 18 C 1.37949 * 119.96471 * 179.69749 * 17 16 14 19 19 C 1.38294 * 120.21140 * 0.60521 * 18 17 16 20 20 C 1.38827 * 120.24653 * 359.67004 * 19 18 17 21 21 O 1.35909 * 119.98135 * 180.02562 * 20 19 18 22 22 C 1.42904 * 117.00082 * 0.02647 * 21 20 19 23 23 C 1.38479 * 120.03289 * 0.03007 * 20 19 18 24 24 H 1.09000 * 109.47031 * 59.99386 * 1 2 3 25 25 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46843 * 299.99589 * 1 2 3 27 27 H 1.09000 * 109.46843 * 240.00411 * 2 1 3 28 28 H 1.09000 * 109.47031 * 120.00614 * 2 1 3 29 29 H 0.96997 * 120.00100 * 180.02562 * 8 7 5 30 30 H 1.08010 * 120.01777 * 359.97438 * 17 16 14 31 31 H 1.08003 * 119.89542 * 180.29645 * 18 17 16 32 32 H 1.07998 * 119.87674 * 179.69679 * 19 18 17 33 33 H 1.09002 * 109.46861 * 299.99977 * 22 21 20 34 34 H 1.08998 * 109.47229 * 59.99733 * 22 21 20 35 35 H 1.08995 * 109.47119 * 179.97438 * 22 21 20 36 36 H 1.08007 * 120.10064 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3364 2.1727 9 14 6.0051 0.8798 1.3810 10 1 6.5989 1.5440 0.1930 11 1 6.4001 1.6154 2.6090 12 1 6.4962 -0.5192 1.4625 13 8 1.6559 2.0917 -1.2407 14 6 0.4685 2.7278 -1.2559 15 8 -0.2271 2.7394 -0.2601 16 6 0.0094 3.4056 -2.4857 17 6 0.8094 3.3984 -3.6304 18 6 0.3746 4.0270 -4.7788 19 6 -0.8465 4.6759 -4.7972 20 6 -1.6463 4.6934 -3.6626 21 8 -2.8456 5.3323 -3.6869 22 6 -3.2198 5.9635 -4.9131 23 6 -1.2226 4.0604 -2.5061 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8293 -0.0614 2.9497 30 1 1.7660 2.8970 -3.6179 31 1 0.9921 4.0166 -5.6648 32 1 -1.1794 5.1704 -5.6977 33 1 -2.4795 6.7202 -5.1728 34 1 -3.2696 5.2169 -5.7057 35 1 -4.1958 6.4344 -4.7963 36 1 -1.8442 4.0730 -1.6229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188028039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:34 Heat of formation + Delta-G solvation = -105.633916 kcal Electronic energy + Delta-G solvation = -19652.545179 eV Core-core repulsion = 16488.165164 eV Total energy + Delta-G solvation = -3164.380015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33117 -39.36179 -37.26384 -35.69215 -33.49366 -31.48768 -31.12473 -30.30166 -27.46388 -27.27881 -24.24016 -22.92435 -22.38044 -20.73275 -19.58243 -18.31833 -16.70129 -16.64996 -16.17121 -15.90820 -15.67908 -15.31402 -15.19139 -14.52664 -13.86015 -13.58935 -13.11515 -12.82364 -12.80205 -12.39056 -12.04469 -11.80437 -11.48153 -11.36669 -11.22820 -11.12471 -10.97928 -10.95147 -10.62918 -10.26848 -9.80312 -9.65561 -9.36259 -9.04436 -8.78976 -8.44984 -8.29571 -6.17845 -4.24830 0.85227 1.40653 3.00646 3.06826 3.24187 3.31211 3.36035 3.74459 3.97642 4.34078 4.66175 4.82109 4.91426 4.92039 5.14154 5.19055 5.24909 5.32760 5.41716 5.78083 5.88700 6.16049 6.25641 6.32050 6.37759 6.46672 6.49524 6.61757 6.89444 6.98689 7.18734 7.24380 7.26734 7.62391 7.74678 7.94310 8.16081 8.62586 8.88963 9.40276 10.89047 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033940 B = 0.004408 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.785838 B = 6349.891634 C = 6804.689362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.348 6.348 14 C 0.495 3.505 15 O -0.508 6.508 16 C -0.073 4.073 17 C -0.099 4.099 18 C -0.096 4.096 19 C -0.185 4.185 20 C 0.110 3.890 21 O -0.316 6.316 22 C 0.028 3.972 23 C -0.093 4.093 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.109 0.891 29 H 0.266 0.734 30 H 0.144 0.856 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 7.670 -14.312 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.558 4.558 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.264 6.264 14 C 0.339 3.661 15 O -0.399 6.399 16 C -0.074 4.074 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.204 4.204 20 C 0.066 3.934 21 O -0.230 6.230 22 C -0.067 4.067 23 C -0.112 4.112 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.162 0.838 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.958 7.563 -13.657 17.999 hybrid contribution 0.891 -0.017 -0.034 0.892 sum -8.068 7.546 -13.691 17.592 Atomic orbital electron populations 1.21870 0.98355 0.99063 1.00823 1.22025 0.92667 0.99272 1.03404 1.20734 0.95082 0.88797 0.78523 0.93376 1.21076 0.89591 1.38898 1.06284 0.91227 1.24886 0.99239 0.94767 0.95065 1.69899 1.35294 1.37853 1.09474 0.86230 0.83897 0.77861 0.78218 1.19479 1.20765 1.20728 1.86525 1.33425 1.62269 1.44199 1.20845 0.81172 0.76969 0.87089 1.90781 1.55530 1.58415 1.35193 1.19195 0.94846 0.99980 0.93376 1.21520 1.00270 0.98372 0.91549 1.20927 0.95384 0.96798 0.98252 1.21409 0.96634 1.04464 0.97887 1.18748 0.85774 0.94775 0.94140 1.86092 1.33426 1.67054 1.36418 1.23046 1.01273 0.96853 0.85555 1.20465 0.95855 0.97460 0.97419 0.94920 0.94770 0.92763 0.93918 0.87274 0.92433 0.83837 0.85065 0.85256 0.92668 0.92686 0.88273 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.56 37.16 0.32 -2.90 16 2 C -0.14 -3.40 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 5.90 2.25 -27.88 -0.06 5.84 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -14.53 8.90 -34.44 -0.31 -14.83 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.05 11.29 55.43 0.63 -24.42 16 9 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 O -0.35 -8.33 9.05 -40.52 -0.37 -8.69 16 14 C 0.50 10.81 6.35 34.61 0.22 11.03 16 15 O -0.51 -12.16 13.53 -19.25 -0.26 -12.42 16 16 C -0.07 -1.27 5.87 -105.00 -0.62 -1.89 16 17 C -0.10 -1.46 9.61 -39.16 -0.38 -1.84 16 18 C -0.10 -1.11 10.02 -39.67 -0.40 -1.51 16 19 C -0.19 -2.07 9.03 -39.34 -0.36 -2.43 16 20 C 0.11 1.48 6.68 -39.27 -0.26 1.22 16 21 O -0.32 -3.84 10.49 -19.46 -0.20 -4.05 16 22 C 0.03 0.20 9.81 101.05 0.99 1.19 16 23 C -0.09 -1.49 9.53 -39.01 -0.37 -1.86 16 24 H 0.03 0.71 6.06 -51.93 -0.31 0.39 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 1.27 7.79 -51.93 -0.40 0.86 16 27 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.14 2.12 7.61 -52.48 -0.40 1.72 16 31 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.13 1.03 6.28 -52.49 -0.33 0.71 16 33 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 34 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 35 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.14 2.36 7.65 -52.48 -0.40 1.96 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -30.93 305.04 -6.65 -37.58 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.56 Total: 1.36 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.46 Total: -9.91 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.63 Total: -24.42 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.83 Total: -25.16 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.93 -6.65 -37.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188028039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.057 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds