Wall clock time and date at job start Mon Mar 30 2020 06:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46868 * 55.00595 * 3 2 1 5 5 C 1.50699 * 109.47061 * 175.00067 * 3 2 1 6 6 H 1.07999 * 120.00056 * 120.00101 * 5 3 2 7 7 C 1.37880 * 120.00172 * 300.00389 * 5 3 2 8 8 N 1.31513 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47173 * 119.99725 * 9 7 5 12 12 H 1.48502 * 109.47134 * 239.99840 * 9 7 5 13 13 O 1.45202 * 109.46961 * 295.00042 * 3 2 1 14 14 C 1.34710 * 116.99623 * 90.00461 * 13 3 2 15 15 O 1.21473 * 120.00082 * 359.97438 * 14 13 3 16 16 C 1.47734 * 119.99759 * 180.27325 * 14 13 3 17 17 C 1.39654 * 120.12618 * 359.44514 * 16 14 13 18 18 C 1.37949 * 119.96471 * 179.69749 * 17 16 14 19 19 C 1.38294 * 120.21140 * 0.60521 * 18 17 16 20 20 C 1.38827 * 120.24653 * 359.67004 * 19 18 17 21 21 O 1.35909 * 119.98135 * 180.02562 * 20 19 18 22 22 C 1.42904 * 117.00082 * 0.02647 * 21 20 19 23 23 C 1.38479 * 120.03289 * 0.03007 * 20 19 18 24 24 H 1.09000 * 109.47031 * 59.99386 * 1 2 3 25 25 H 1.09001 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46843 * 299.99589 * 1 2 3 27 27 H 1.09000 * 109.46843 * 240.00411 * 2 1 3 28 28 H 1.09000 * 109.47031 * 120.00614 * 2 1 3 29 29 H 0.96997 * 120.00100 * 180.02562 * 8 7 5 30 30 H 1.08010 * 120.01777 * 359.97438 * 17 16 14 31 31 H 1.08003 * 119.89542 * 180.29645 * 18 17 16 32 32 H 1.07998 * 119.87674 * 179.69679 * 19 18 17 33 33 H 1.09002 * 109.46861 * 299.99977 * 22 21 20 34 34 H 1.08998 * 109.47229 * 59.99733 * 22 21 20 35 35 H 1.08995 * 109.47119 * 179.97438 * 22 21 20 36 36 H 1.08007 * 120.10064 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3364 2.1727 9 14 6.0051 0.8798 1.3810 10 1 6.5989 1.5440 0.1930 11 1 6.4001 1.6154 2.6090 12 1 6.4962 -0.5192 1.4625 13 8 1.6559 2.0917 -1.2407 14 6 0.4685 2.7278 -1.2559 15 8 -0.2271 2.7394 -0.2601 16 6 0.0094 3.4056 -2.4857 17 6 0.8094 3.3984 -3.6304 18 6 0.3746 4.0270 -4.7788 19 6 -0.8465 4.6759 -4.7972 20 6 -1.6463 4.6934 -3.6626 21 8 -2.8456 5.3323 -3.6869 22 6 -3.2198 5.9635 -4.9131 23 6 -1.2226 4.0604 -2.5061 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8293 -0.0614 2.9497 30 1 1.7660 2.8970 -3.6179 31 1 0.9921 4.0166 -5.6648 32 1 -1.1794 5.1704 -5.6977 33 1 -2.4795 6.7202 -5.1728 34 1 -3.2696 5.2169 -5.7057 35 1 -4.1958 6.4344 -4.7963 36 1 -1.8442 4.0730 -1.6229 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188028039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:33 Heat of formation + Delta-G solvation = -123.714639 kcal Electronic energy + Delta-G solvation = -19653.329218 eV Core-core repulsion = 16488.165164 eV Total energy + Delta-G solvation = -3165.164054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.65611 -40.77681 -38.39252 -37.51138 -35.51517 -33.41378 -32.33122 -31.38927 -29.31483 -28.15320 -25.84998 -24.71805 -23.43471 -22.36012 -21.33743 -19.66806 -18.65654 -18.19486 -17.23958 -17.12940 -16.96742 -16.73541 -16.61810 -16.31984 -15.09477 -14.79646 -14.74629 -14.48352 -14.19473 -13.57735 -13.42467 -13.36173 -13.12652 -13.09551 -12.83229 -12.78223 -12.56787 -12.12730 -12.03400 -11.96989 -11.77818 -11.50180 -11.34447 -10.83797 -10.54365 -10.15817 -9.32108 -8.27596 -6.44670 -0.36581 0.34814 1.42213 1.43191 1.56505 1.59765 1.82139 2.34996 2.51619 2.73915 3.02187 3.72589 3.77533 4.03186 4.16092 4.25909 4.34551 4.37165 4.43880 4.45787 4.46028 4.58645 4.76185 4.81321 4.84352 5.05258 5.14355 5.19184 5.28885 5.33498 5.36576 5.50505 5.60550 5.64988 5.93762 6.08402 6.37647 6.59754 6.93140 7.26403 8.79747 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033940 B = 0.004408 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.785838 B = 6349.891634 C = 6804.689362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.006 0.994 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.271 1.271 13 O -0.352 6.352 14 C 0.490 3.510 15 O -0.542 6.542 16 C -0.100 4.100 17 C -0.107 4.107 18 C -0.080 4.080 19 C -0.163 4.163 20 C 0.113 3.887 21 O -0.336 6.336 22 C 0.015 3.985 23 C -0.113 4.113 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.035 0.965 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.271 0.729 30 H 0.139 0.861 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 8.545 -17.497 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.196 1.196 13 O -0.269 6.269 14 C 0.337 3.663 15 O -0.434 6.434 16 C -0.101 4.101 17 C -0.125 4.125 18 C -0.097 4.097 19 C -0.181 4.181 20 C 0.067 3.933 21 O -0.251 6.251 22 C -0.079 4.079 23 C -0.132 4.132 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.157 0.843 31 H 0.192 0.808 32 H 0.192 0.808 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.136 0.864 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.650 8.450 -16.865 20.752 hybrid contribution 0.642 -0.171 0.853 1.081 sum -8.008 8.279 -16.012 19.724 Atomic orbital electron populations 1.21723 0.96516 1.00645 0.99932 1.21873 0.94263 0.98009 1.02547 1.20458 0.94792 0.89316 0.78382 0.97635 1.21349 0.90219 1.40012 1.07052 0.91398 1.25830 1.04382 0.93807 0.94281 1.70023 1.37455 1.37920 1.09888 0.85127 0.77486 0.78347 0.78392 1.18656 1.20235 1.19590 1.86506 1.34904 1.62825 1.42638 1.21711 0.79953 0.76197 0.88458 1.90747 1.56092 1.59706 1.36886 1.18963 0.96520 1.02261 0.92404 1.21606 0.99867 0.99137 0.91886 1.21357 0.95716 0.94591 0.98055 1.21895 0.95413 1.02535 0.98271 1.18761 0.86623 0.94123 0.93745 1.86084 1.32649 1.67014 1.39304 1.23453 1.02732 0.97569 0.84160 1.20359 0.95477 0.99014 0.98368 0.94846 0.91769 0.94612 0.93304 0.89304 0.92001 0.84318 0.80827 0.80819 0.90964 0.90913 0.86440 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.56 71.98 0.62 -5.44 16 2 C -0.13 -6.70 5.49 30.60 0.17 -6.54 16 3 C 0.22 12.60 2.25 29.85 0.07 12.66 16 4 H 0.01 0.37 7.16 -2.39 -0.02 0.35 16 5 C -0.55 -31.64 8.90 25.60 0.23 -31.41 16 6 H 0.07 3.83 7.81 -2.91 -0.02 3.80 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.91 -53.03 11.29 21.45 0.24 -52.79 16 9 Si 0.98 43.19 29.54 68.60 2.03 45.22 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 13 O -0.35 -17.75 9.05 -56.19 -0.51 -18.26 16 14 C 0.49 22.73 6.35 70.33 0.45 23.18 16 15 O -0.54 -27.92 13.53 19.92 0.27 -27.65 16 16 C -0.10 -3.62 5.87 -20.11 -0.12 -3.74 16 17 C -0.11 -3.06 9.61 22.54 0.22 -2.84 16 18 C -0.08 -1.54 10.02 22.21 0.22 -1.32 16 19 C -0.16 -2.93 9.03 22.42 0.20 -2.73 16 20 C 0.11 2.81 6.68 22.47 0.15 2.96 16 21 O -0.34 -7.48 10.49 -92.53 -0.97 -8.45 16 22 C 0.01 0.16 9.81 113.37 1.11 1.27 16 23 C -0.11 -3.71 9.53 22.64 0.22 -3.50 16 24 H 0.03 1.50 6.06 -2.39 -0.01 1.49 16 25 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.03 1.75 7.79 -2.39 -0.02 1.73 16 27 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.09 4.99 5.95 -2.39 -0.01 4.98 16 29 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.14 4.05 7.61 -2.91 -0.02 4.03 16 31 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.17 1.63 6.28 -2.91 -0.02 1.61 16 33 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 34 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 35 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.12 4.42 7.65 -2.91 -0.02 4.39 16 Total: -1.00 -71.45 305.04 6.12 -65.33 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.08 Total: 12.67 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 3.98 Total: -16.07 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.24 Total: -52.79 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: -1.21 Total: -54.36 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -71.45 6.12 -65.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188028039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.380 kcal (2) G-P(sol) polarization free energy of solvation -71.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds