Wall clock time and date at job start Mon Mar 30 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 O 1.42897 * 109.46881 * 294.99866 * 3 2 1 14 14 C 1.34996 * 117.00407 * 89.99942 * 13 3 2 15 15 O 1.21709 * 119.99478 * 359.97438 * 14 13 3 16 16 C 1.41291 * 120.00515 * 179.97438 * 14 13 3 17 17 C 1.35749 * 119.99933 * 180.02562 * 16 14 13 18 18 C 1.41535 * 119.99757 * 180.02562 * 17 16 14 19 19 C 1.38000 * 126.10780 * 179.71582 * 18 17 16 20 20 C 1.40278 * 106.52414 * 179.88387 * 19 18 17 21 21 C 1.35177 * 107.21351 * 0.37907 * 20 19 18 22 22 C 1.50694 * 125.48151 * 179.74486 * 21 20 19 23 23 O 1.34004 * 109.03847 * 359.76125 * 21 20 19 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 1.07998 * 119.99497 * 0.02562 * 16 14 13 31 31 H 1.07998 * 120.00570 * 359.97438 * 17 16 14 32 32 H 1.07999 * 126.73548 * 0.02562 * 19 18 17 33 33 H 1.08003 * 126.39235 * 180.11477 * 20 19 18 34 34 H 1.09001 * 109.47541 * 179.97438 * 22 21 20 35 35 H 1.09004 * 109.47270 * 299.99630 * 22 21 20 36 36 H 1.08999 * 109.47824 * 59.99461 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 8 1.6620 2.0814 -1.2210 14 6 0.4720 2.7187 -1.2365 15 8 -0.2250 2.7304 -0.2389 16 6 0.0358 3.3723 -2.4108 17 6 -1.1605 4.0137 -2.4261 18 6 -1.5977 4.6679 -3.6025 19 6 -2.7871 5.3498 -3.7597 20 6 -2.7985 5.8340 -5.0762 21 6 -1.6479 5.4315 -5.6604 22 6 -1.2398 5.7230 -7.0814 23 8 -0.9286 4.7313 -4.7727 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 0.6542 3.3616 -3.2961 31 1 -1.7791 4.0240 -1.5408 32 1 -3.5569 5.4862 -3.0145 33 1 -3.5824 6.4157 -5.5383 34 1 -0.2653 5.2763 -7.2786 35 1 -1.9776 5.3026 -7.7649 36 1 -1.1812 6.8014 -7.2288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188028777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:37 Heat of formation + Delta-G solvation = -58.987193 kcal Electronic energy + Delta-G solvation = -19277.993289 eV Core-core repulsion = 16115.636028 eV Total energy + Delta-G solvation = -3162.357261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.77778 -39.97675 -36.45589 -34.31433 -33.52947 -33.48513 -31.91431 -31.38180 -28.09651 -27.14301 -23.92122 -22.64455 -22.08357 -21.13191 -20.16332 -19.24275 -17.64412 -16.92021 -16.48053 -16.23576 -15.89860 -15.55573 -14.75082 -14.55237 -13.60830 -13.44242 -13.38034 -13.19149 -13.07341 -12.76765 -12.52325 -12.30146 -12.07264 -11.93292 -11.69263 -11.45242 -11.22344 -10.74362 -10.68629 -10.07567 -9.99940 -9.93646 -9.56119 -9.49702 -9.02374 -8.61930 -8.01355 -6.20270 -4.22307 0.32183 1.89350 2.53437 2.63099 3.20626 3.32730 3.36125 3.55035 3.67833 4.29143 4.44381 4.66409 4.79981 4.97144 5.09460 5.10166 5.14340 5.34456 5.45022 5.55506 5.58565 5.83517 5.88995 5.91225 5.98176 6.02569 6.24324 6.30951 6.48609 6.59245 6.70191 6.76848 6.90080 7.09693 7.40273 7.55846 8.24445 8.63453 8.87711 9.37356 10.91852 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.038207 B = 0.003875 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.674137 B = 7223.675439 C = 7608.573342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.192 3.808 4 H 0.046 0.954 5 C -0.524 4.524 6 H 0.087 0.913 7 C 0.079 3.921 8 N -0.889 5.889 9 Si 0.878 3.122 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.260 1.260 13 O -0.329 6.329 14 C 0.486 3.514 15 O -0.520 6.520 16 C -0.169 4.169 17 C -0.001 4.001 18 C -0.005 4.005 19 C -0.162 4.162 20 C -0.218 4.218 21 C 0.005 3.995 22 C -0.079 4.079 23 O -0.161 6.161 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.269 0.731 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 8.079 -13.453 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.138 3.862 4 H 0.063 0.937 5 C -0.562 4.562 6 H 0.105 0.895 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.707 3.293 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.185 1.185 13 O -0.244 6.244 14 C 0.334 3.666 15 O -0.413 6.413 16 C -0.188 4.188 17 C -0.019 4.019 18 C -0.054 4.054 19 C -0.182 4.182 20 C -0.237 4.237 21 C -0.047 4.047 22 C -0.135 4.135 23 O -0.057 6.057 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.157 0.843 31 H 0.179 0.821 32 H 0.174 0.826 33 H 0.170 0.830 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.084 7.862 -13.081 22.172 hybrid contribution -0.568 -0.496 0.920 1.189 sum -16.651 7.366 -12.162 21.896 Atomic orbital electron populations 1.21899 0.97024 0.99946 1.01772 1.22389 0.94336 0.99774 1.02151 1.20584 0.96374 0.88202 0.81085 0.93656 1.20825 0.87748 1.39795 1.07831 0.89542 1.24748 0.94948 0.95284 0.97405 1.69841 1.08512 1.44452 1.29805 0.86975 0.81036 0.80107 0.81185 1.19962 1.21747 1.18465 1.86241 1.33998 1.62272 1.41933 1.19708 0.81103 0.77565 0.88261 1.90834 1.55339 1.59129 1.35997 1.21557 0.97868 1.00821 0.98579 1.20665 0.95694 0.91940 0.93600 1.19773 0.93526 1.05957 0.86112 1.22320 0.97591 1.00448 0.97801 1.21482 0.99632 1.07316 0.95316 1.22748 0.92080 0.96848 0.93021 1.20392 1.03375 1.03038 0.86687 1.84084 1.43900 1.58026 1.19691 0.93999 0.93594 0.92508 0.91900 0.91283 0.92105 0.84274 0.82059 0.82582 0.83038 0.90205 0.89404 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.55 37.16 0.32 -2.68 16 2 C -0.15 -3.45 5.14 -26.73 -0.14 -3.59 16 3 C 0.19 4.93 1.81 -27.88 -0.05 4.88 16 4 H 0.05 1.22 6.17 -51.93 -0.32 0.90 16 5 C -0.52 -15.31 9.47 -34.44 -0.33 -15.63 16 6 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 8 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 9 Si 0.88 21.94 24.41 -169.99 -4.15 17.79 16 10 H -0.27 -6.54 6.83 56.52 0.39 -6.16 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 13 O -0.33 -7.76 9.68 -41.31 -0.40 -8.16 16 14 C 0.49 9.88 6.10 31.89 0.19 10.07 16 15 O -0.52 -11.25 13.23 -19.43 -0.26 -11.51 16 16 C -0.17 -2.71 9.55 -39.31 -0.38 -3.08 16 17 C 0.00 -0.01 9.39 -39.22 -0.37 -0.38 16 18 C 0.00 -0.06 6.84 -38.41 -0.26 -0.32 16 19 C -0.16 -1.67 10.90 -38.90 -0.42 -2.09 16 20 C -0.22 -2.00 10.76 -39.90 -0.43 -2.43 16 21 C 0.00 0.05 7.30 -35.40 -0.26 -0.21 16 22 C -0.08 -0.46 10.41 36.00 0.37 -0.08 16 23 O -0.16 -2.03 10.18 4.70 0.05 -1.99 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.90 6.05 -51.93 -0.31 0.58 16 26 H 0.06 1.18 7.75 -51.93 -0.40 0.77 16 27 H 0.06 1.50 3.21 -51.93 -0.17 1.33 16 28 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.14 2.08 7.72 -52.49 -0.41 1.67 16 31 H 0.16 2.02 7.46 -52.49 -0.39 1.62 16 32 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 305.14 15.07 4.60 4.60 Total: -1.00 -32.86 305.14 -5.79 -38.65 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.57 Total: 0.27 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.84 Total: -13.35 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.77 Total: -26.31 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.61 Total: -21.65 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.15 Total: 17.79 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.86 -5.79 -38.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188028777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.333 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds