Wall clock time and date at job start Mon Mar 30 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 O 1.42897 * 109.46881 * 294.99866 * 3 2 1 14 14 C 1.34996 * 117.00407 * 89.99942 * 13 3 2 15 15 O 1.21709 * 119.99478 * 359.97438 * 14 13 3 16 16 C 1.41291 * 120.00515 * 179.97438 * 14 13 3 17 17 C 1.35749 * 119.99933 * 180.02562 * 16 14 13 18 18 C 1.41535 * 119.99757 * 180.02562 * 17 16 14 19 19 C 1.38000 * 126.10780 * 179.71582 * 18 17 16 20 20 C 1.40278 * 106.52414 * 179.88387 * 19 18 17 21 21 C 1.35177 * 107.21351 * 0.37907 * 20 19 18 22 22 C 1.50694 * 125.48151 * 179.74486 * 21 20 19 23 23 O 1.34004 * 109.03847 * 359.76125 * 21 20 19 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 1.07998 * 119.99497 * 0.02562 * 16 14 13 31 31 H 1.07998 * 120.00570 * 359.97438 * 17 16 14 32 32 H 1.07999 * 126.73548 * 0.02562 * 19 18 17 33 33 H 1.08003 * 126.39235 * 180.11477 * 20 19 18 34 34 H 1.09001 * 109.47541 * 179.97438 * 22 21 20 35 35 H 1.09004 * 109.47270 * 299.99630 * 22 21 20 36 36 H 1.08999 * 109.47824 * 59.99461 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 8 1.6620 2.0814 -1.2210 14 6 0.4720 2.7187 -1.2365 15 8 -0.2250 2.7304 -0.2389 16 6 0.0358 3.3723 -2.4108 17 6 -1.1605 4.0137 -2.4261 18 6 -1.5977 4.6679 -3.6025 19 6 -2.7871 5.3498 -3.7597 20 6 -2.7985 5.8340 -5.0762 21 6 -1.6479 5.4315 -5.6604 22 6 -1.2398 5.7230 -7.0814 23 8 -0.9286 4.7313 -4.7727 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 0.6542 3.3616 -3.2961 31 1 -1.7791 4.0240 -1.5408 32 1 -3.5569 5.4862 -3.0145 33 1 -3.5824 6.4157 -5.5383 34 1 -0.2653 5.2763 -7.2786 35 1 -1.9776 5.3026 -7.7649 36 1 -1.1812 6.8014 -7.2288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188028777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:36 Heat of formation + Delta-G solvation = -79.259145 kcal Electronic energy + Delta-G solvation = -19278.872347 eV Core-core repulsion = 16115.636028 eV Total energy + Delta-G solvation = -3163.236319 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.62155 -41.63095 -38.13900 -35.52833 -35.41817 -34.28772 -33.91801 -32.20623 -29.90392 -28.28263 -25.30815 -24.35310 -22.91351 -22.57267 -21.53232 -20.56949 -19.24699 -18.78407 -17.75098 -17.35516 -17.28079 -17.14847 -16.40578 -15.63348 -15.27997 -14.96446 -14.28992 -14.13809 -13.96223 -13.91150 -13.82415 -13.74632 -13.56147 -13.27057 -13.16815 -13.10891 -12.74856 -12.57646 -12.04629 -11.75206 -11.67180 -11.50131 -11.32590 -11.12108 -10.80123 -10.71876 -8.93640 -8.45682 -6.54507 -0.77782 0.98298 1.22738 1.30225 1.41031 1.58132 1.84915 2.13435 2.19504 2.20462 2.86478 3.66937 3.83586 3.91922 4.05148 4.08837 4.11744 4.18249 4.31198 4.46076 4.57269 4.64639 4.73042 4.77516 4.82797 4.92448 4.95187 5.03518 5.06813 5.10699 5.20989 5.33363 5.36443 5.53728 5.66877 6.07342 6.15124 6.48839 6.91389 7.11738 8.70588 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.038207 B = 0.003875 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.674137 B = 7223.675439 C = 7608.573342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.148 4.148 3 C 0.197 3.803 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.042 0.958 7 C 0.029 3.971 8 N -0.931 5.931 9 Si 0.942 3.058 10 H -0.250 1.250 11 H -0.282 1.282 12 H -0.254 1.254 13 O -0.351 6.351 14 C 0.489 3.511 15 O -0.542 6.542 16 C -0.222 4.222 17 C 0.054 3.946 18 C -0.059 4.059 19 C -0.131 4.131 20 C -0.228 4.228 21 C 0.012 3.988 22 C -0.082 4.082 23 O -0.185 6.185 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.276 0.724 30 H 0.139 0.861 31 H 0.173 0.827 32 H 0.183 0.817 33 H 0.184 0.816 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.886 8.572 -14.355 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.185 4.185 3 C 0.142 3.858 4 H 0.048 0.952 5 C -0.581 4.581 6 H 0.060 0.940 7 C -0.170 4.170 8 N -0.570 5.570 9 Si 0.766 3.234 10 H -0.175 1.175 11 H -0.209 1.209 12 H -0.178 1.178 13 O -0.267 6.267 14 C 0.340 3.660 15 O -0.437 6.437 16 C -0.241 4.241 17 C 0.036 3.964 18 C -0.107 4.107 19 C -0.150 4.150 20 C -0.246 4.246 21 C -0.040 4.040 22 C -0.138 4.138 23 O -0.082 6.082 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.190 0.810 32 H 0.201 0.799 33 H 0.202 0.798 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.587 8.360 -14.004 25.488 hybrid contribution 0.376 -0.375 0.903 1.047 sum -19.211 7.986 -13.101 24.586 Atomic orbital electron populations 1.21807 0.94373 1.02012 1.01494 1.22295 0.96677 0.97522 1.02013 1.20266 0.93902 0.89984 0.81610 0.95183 1.21033 0.89853 1.39973 1.07229 0.93952 1.25613 0.96173 0.95507 0.99743 1.69967 1.10438 1.45521 1.31034 0.85949 0.79294 0.80258 0.77874 1.17490 1.20868 1.17838 1.86217 1.36274 1.63306 1.40881 1.20236 0.79683 0.76790 0.89322 1.90796 1.55546 1.60372 1.36954 1.21220 1.00126 1.05360 0.97374 1.20837 0.93641 0.87719 0.94193 1.19782 0.95257 1.09318 0.86323 1.22837 0.96436 0.97010 0.98723 1.21941 1.00246 1.07589 0.94823 1.23720 0.91852 0.94499 0.93942 1.20651 1.03896 1.04579 0.84629 1.84091 1.44969 1.58922 1.20251 0.90648 0.93548 0.93157 0.92224 0.91159 0.91514 0.84295 0.80997 0.79936 0.79820 0.90513 0.87099 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.55 71.98 0.62 -4.80 16 2 C -0.15 -6.80 5.14 30.60 0.16 -6.64 16 3 C 0.20 10.46 1.81 29.85 0.05 10.51 16 4 H 0.03 1.68 6.17 -2.39 -0.01 1.66 16 5 C -0.54 -33.36 9.47 25.60 0.24 -33.11 16 6 H 0.04 2.87 8.06 -2.91 -0.02 2.85 16 7 C 0.03 1.75 5.45 84.66 0.46 2.21 16 8 N -0.93 -58.56 13.96 21.45 0.30 -58.26 16 9 Si 0.94 45.42 24.41 68.60 1.67 47.10 16 10 H -0.25 -11.09 6.83 99.48 0.68 -10.41 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.25 -11.97 6.53 99.48 0.65 -11.32 16 13 O -0.35 -17.38 9.68 -59.15 -0.57 -17.95 16 14 C 0.49 20.61 6.10 68.57 0.42 21.03 16 15 O -0.54 -23.84 13.23 19.15 0.25 -23.58 16 16 C -0.22 -7.36 9.55 22.44 0.21 -7.15 16 17 C 0.05 1.43 9.39 22.51 0.21 1.65 16 18 C -0.06 -1.37 6.84 23.03 0.16 -1.22 16 19 C -0.13 -2.24 10.90 22.71 0.25 -1.99 16 20 C -0.23 -3.27 10.76 22.06 0.24 -3.03 16 21 C 0.01 0.20 7.30 24.98 0.18 0.38 16 22 C -0.08 -0.69 10.41 71.23 0.74 0.05 16 23 O -0.19 -4.48 10.18 -6.08 -0.06 -4.54 16 24 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.05 1.77 6.05 -2.39 -0.01 1.76 16 26 H 0.05 2.00 7.75 -2.38 -0.02 1.98 16 27 H 0.06 2.76 3.21 -2.39 -0.01 2.75 16 28 H 0.07 3.16 8.14 -2.39 -0.02 3.15 16 29 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 30 H 0.14 4.46 7.72 -2.91 -0.02 4.44 16 31 H 0.17 4.06 7.46 -2.91 -0.02 4.04 16 32 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -74.76 305.14 6.53 -68.23 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.00 Total: 11.13 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.94 Total: -22.11 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.30 Total: -58.26 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -0.38 Total: -46.08 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.67 Total: 47.10 kcal Total: -74.76 6.53 -68.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188028777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.033 kcal (2) G-P(sol) polarization free energy of solvation -74.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds