Wall clock time and date at job start Mon Mar 30 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46999 * 2 1 4 4 H 1.09001 * 109.47299 * 305.22059 * 3 2 1 5 5 C 1.50699 * 109.46976 * 185.22213 * 3 2 1 6 6 H 1.08005 * 120.00155 * 244.96911 * 5 3 2 7 7 C 1.37873 * 120.00070 * 64.96952 * 5 3 2 8 8 N 1.31515 * 119.99871 * 7.03211 * 7 5 3 9 9 Si 1.86803 * 120.00139 * 187.02755 * 7 5 3 10 10 H 1.48491 * 109.47003 * 84.99341 * 9 7 5 11 11 H 1.48504 * 109.47072 * 204.99537 * 9 7 5 12 12 H 1.48495 * 109.46926 * 324.99099 * 9 7 5 13 13 O 1.42898 * 109.47524 * 65.22289 * 3 2 1 14 14 C 1.34997 * 117.00162 * 270.00370 * 13 3 2 15 15 O 1.21711 * 120.00076 * 359.97438 * 14 13 3 16 16 C 1.41287 * 120.00239 * 179.97438 * 14 13 3 17 17 C 1.35762 * 120.00142 * 179.97438 * 16 14 13 18 18 C 1.41531 * 119.99910 * 179.97438 * 17 16 14 19 19 C 1.38002 * 126.10355 * 179.71820 * 18 17 16 20 20 C 1.40280 * 106.52129 * 179.88712 * 19 18 17 21 21 C 1.35176 * 107.21469 * 0.37502 * 20 19 18 22 22 C 1.50700 * 125.48317 * 179.74600 * 21 20 19 23 23 O 1.34003 * 109.03995 * 359.76256 * 21 20 19 24 24 H 1.08992 * 109.47217 * 60.00113 * 1 2 3 25 25 H 1.09008 * 109.47052 * 299.99811 * 1 2 3 26 26 H 1.09005 * 109.47048 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47236 * 119.99918 * 2 1 3 28 28 H 1.08996 * 109.47260 * 239.99870 * 2 1 3 29 29 H 0.97007 * 120.00179 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.00206 * 359.97438 * 16 14 13 31 31 H 1.08001 * 119.99652 * 0.02562 * 17 16 14 32 32 H 1.08001 * 126.73812 * 0.02562 * 19 18 17 33 33 H 1.08004 * 126.39065 * 180.11948 * 20 19 18 34 34 H 1.08999 * 109.47362 * 179.97438 * 22 21 20 35 35 H 1.09001 * 109.46855 * 299.99460 * 22 21 20 36 36 H 1.09002 * 109.47071 * 59.99242 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9826 -0.8395 5 6 3.5414 1.4444 -0.1293 6 1 4.1527 1.8150 0.6803 7 6 4.1347 0.9732 -1.2812 8 7 3.3932 0.6518 -2.3187 9 14 5.9919 0.7914 -1.3682 10 1 6.3881 -0.5207 -0.7969 11 1 6.4308 0.8674 -2.7848 12 1 6.6330 1.8831 -0.5922 13 8 1.6665 2.0798 1.2232 14 6 0.4766 2.7172 1.2438 15 8 -0.2238 2.7308 0.2485 16 6 0.0442 3.3684 2.4207 17 6 -1.1522 4.0098 2.4412 18 6 -1.5855 4.6616 3.6204 19 6 -2.7695 5.3525 3.7794 20 6 -2.7810 5.8257 5.0999 21 6 -1.6282 5.4226 5.6794 22 6 -1.2146 5.7130 7.0991 23 8 -0.9121 4.7236 4.7882 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8106 0.3198 -3.1290 30 1 0.6654 3.3560 3.3041 31 1 -1.7736 4.0218 1.5580 32 1 -3.5375 5.4982 3.0342 33 1 -3.5630 6.4073 5.5654 34 1 -0.2398 5.2652 7.2924 35 1 -1.1551 6.7914 7.2468 36 1 -1.9499 5.2924 7.7851 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188028795.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:38 Heat of formation + Delta-G solvation = -69.771832 kcal Electronic energy + Delta-G solvation = -19186.645216 eV Core-core repulsion = 16023.820298 eV Total energy + Delta-G solvation = -3162.824918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.72448 -39.73564 -36.19990 -34.20634 -33.43916 -33.38514 -31.55103 -31.20401 -27.77559 -26.83572 -23.89099 -22.80685 -22.02915 -20.86283 -19.91396 -19.05789 -17.42431 -16.78635 -16.42775 -16.16881 -15.47135 -15.26468 -14.69028 -14.48234 -13.56410 -13.36491 -13.17068 -13.14353 -12.90623 -12.66882 -12.38437 -12.09515 -11.96162 -11.52189 -11.24961 -11.19193 -10.96033 -10.63508 -10.60550 -10.24595 -9.94074 -9.84584 -9.65940 -9.32388 -8.75560 -8.42011 -7.94320 -6.15795 -4.20354 0.41176 1.95569 2.61480 2.68270 3.27818 3.32895 3.36293 3.70939 3.85891 4.37419 4.49694 4.72216 4.87865 5.02753 5.12674 5.17210 5.21677 5.38291 5.51429 5.63476 5.72615 5.95396 6.06504 6.22629 6.26689 6.32992 6.39600 6.48305 6.88675 6.95082 6.99824 7.18124 7.23724 7.63676 7.73237 7.92036 8.17904 8.67422 8.95564 9.44255 10.93042 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.031903 B = 0.003767 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.439206 B = 7430.732787 C = 7946.560046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.214 3.786 4 H 0.052 0.948 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.908 3.092 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.344 6.344 14 C 0.484 3.516 15 O -0.517 6.517 16 C -0.165 4.165 17 C -0.007 4.007 18 C -0.001 4.001 19 C -0.166 4.166 20 C -0.218 4.218 21 C 0.001 3.999 22 C -0.078 4.078 23 O -0.162 6.162 24 H 0.055 0.945 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.266 0.734 30 H 0.137 0.863 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 8.470 15.104 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.161 3.839 4 H 0.070 0.930 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.523 5.523 9 Si 0.735 3.265 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.260 6.260 14 C 0.331 3.669 15 O -0.410 6.410 16 C -0.184 4.184 17 C -0.025 4.025 18 C -0.050 4.050 19 C -0.185 4.185 20 C -0.237 4.237 21 C -0.050 4.050 22 C -0.134 4.134 23 O -0.058 6.058 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.179 0.821 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.796 8.234 14.643 19.969 hybrid contribution 0.735 -0.148 -0.310 0.811 sum -10.060 8.086 14.334 19.289 Atomic orbital electron populations 1.21866 0.98158 0.99052 1.00984 1.21949 0.92904 0.99584 1.02336 1.20270 0.95257 0.88740 0.79629 0.92993 1.21019 0.89627 1.43324 1.02135 0.91387 1.24898 0.99062 0.95124 0.94746 1.69977 1.35625 1.43443 1.03291 0.86353 0.84164 0.78812 0.77201 1.20275 1.21074 1.19687 1.86212 1.33870 1.62381 1.43535 1.19637 0.81409 0.77737 0.88128 1.90839 1.55086 1.58887 1.36203 1.21621 0.97713 1.00459 0.98593 1.20668 0.95903 0.92418 0.93540 1.19801 0.93525 1.05598 0.86073 1.22312 0.97820 1.00608 0.97722 1.21473 0.99558 1.07348 0.95273 1.22723 0.92119 0.97222 0.92958 1.20379 1.03282 1.02971 0.86774 1.84079 1.43828 1.58115 1.19755 0.92615 0.94749 0.94810 0.93782 0.89060 0.92448 0.84515 0.82057 0.82600 0.83091 0.90272 0.89443 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.55 37.16 0.32 -2.86 16 2 C -0.13 -3.25 5.52 -26.73 -0.15 -3.40 16 3 C 0.21 5.82 2.08 -27.89 -0.06 5.77 16 4 H 0.05 1.57 7.09 -51.93 -0.37 1.20 16 5 C -0.52 -14.95 8.82 -34.44 -0.30 -15.25 16 6 H 0.07 1.92 7.82 -52.48 -0.41 1.51 16 7 C 0.06 1.80 5.20 -17.82 -0.09 1.71 16 8 N -0.89 -25.58 12.01 55.43 0.67 -24.91 16 9 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 O -0.34 -8.47 9.68 -41.31 -0.40 -8.87 16 14 C 0.48 10.43 6.11 31.89 0.19 10.62 16 15 O -0.52 -12.04 13.24 -19.43 -0.26 -12.29 16 16 C -0.16 -2.79 9.55 -39.31 -0.38 -3.16 16 17 C -0.01 -0.10 9.39 -39.21 -0.37 -0.47 16 18 C 0.00 -0.01 6.84 -38.41 -0.26 -0.27 16 19 C -0.17 -1.80 10.90 -38.90 -0.42 -2.22 16 20 C -0.22 -2.10 10.76 -39.90 -0.43 -2.53 16 21 C 0.00 0.02 7.30 -35.40 -0.26 -0.24 16 22 C -0.08 -0.48 10.41 36.01 0.37 -0.10 16 23 O -0.16 -2.12 10.18 4.70 0.05 -2.07 16 24 H 0.05 1.29 7.76 -51.93 -0.40 0.89 16 25 H 0.03 0.73 6.05 -51.92 -0.31 0.42 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.09 2.46 6.65 -51.93 -0.35 2.11 16 29 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.14 2.14 7.72 -52.49 -0.41 1.73 16 31 H 0.16 2.19 7.46 -52.49 -0.39 1.80 16 32 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -31.89 313.09 -6.81 -38.70 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -4.73 Total: 0.84 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -1.83 Total: -12.42 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.67 Total: -24.91 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.61 Total: -23.24 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.89 -6.81 -38.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188028795.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.073 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds