Wall clock time and date at job start Mon Mar 30 2020 06:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 C 1.50707 * 119.99972 * 180.23526 * 5 4 3 7 7 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 8 8 C 1.50706 * 120.00280 * 179.82644 * 7 5 4 9 9 O 1.42895 * 109.47066 * 205.01901 * 8 7 5 10 10 Si 1.63101 * 113.99828 * 149.99904 * 9 8 7 11 11 C 1.86302 * 109.46897 * 60.00038 * 10 9 8 12 12 C 1.86292 * 109.47471 * 179.97438 * 10 9 8 13 13 C 1.86297 * 109.47338 * 300.00394 * 10 9 8 14 14 C 1.50700 * 109.46705 * 85.02032 * 8 7 5 15 15 N 1.27946 * 119.99824 * 234.99979 * 14 8 7 16 16 Si 1.86797 * 120.00168 * 55.00401 * 14 8 7 17 17 H 1.48500 * 109.47368 * 359.97438 * 16 14 8 18 18 H 1.48495 * 109.47495 * 119.99752 * 16 14 8 19 19 H 1.48506 * 109.47206 * 239.99595 * 16 14 8 20 20 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 22 22 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 23 23 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 24 24 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 25 25 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 26 26 H 1.09004 * 109.47201 * 270.17114 * 6 5 4 27 27 H 1.08996 * 109.46896 * 30.17288 * 6 5 4 28 28 H 1.08999 * 109.46646 * 150.17148 * 6 5 4 29 29 H 1.09001 * 109.46968 * 325.02719 * 8 7 5 30 30 H 1.09007 * 109.47447 * 59.99991 * 11 10 9 31 31 H 1.09002 * 109.47301 * 180.02562 * 11 10 9 32 32 H 1.09006 * 109.47345 * 300.00047 * 11 10 9 33 33 H 1.09011 * 109.46829 * 60.00058 * 12 10 9 34 34 H 1.08997 * 109.47878 * 179.97438 * 12 10 9 35 35 H 1.08999 * 109.47232 * 300.00705 * 12 10 9 36 36 H 1.09006 * 109.47155 * 59.99799 * 13 10 9 37 37 H 1.09002 * 109.47170 * 179.97438 * 13 10 9 38 38 H 1.09002 * 109.47180 * 299.99632 * 13 10 9 39 39 H 0.97001 * 120.00094 * 180.02562 * 15 14 8 40 40 H 1.07996 * 120.00479 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 5.7787 -0.0002 -0.0013 7 6 3.5806 -1.1971 0.0006 8 6 4.3340 -2.5023 0.0017 9 8 3.5147 -3.5257 -0.5668 10 14 4.3528 -4.7025 -1.3236 11 6 5.4994 -5.5276 -0.1089 12 6 3.1679 -5.9638 -2.0131 13 6 5.3489 -3.9609 -2.7123 14 6 4.6923 -2.8742 1.4175 15 7 5.9111 -3.1084 1.7284 16 14 3.3571 -2.9933 2.7184 17 1 2.0411 -2.6768 2.1074 18 1 3.3275 -4.3705 3.2728 19 1 3.6412 -2.0265 3.8093 20 6 2.1980 -1.1970 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8898 0.5139 23 1 -0.3633 0.8900 0.5137 24 1 1.6584 2.1326 -0.0005 25 1 4.1205 2.1325 -0.0099 26 1 6.1418 -0.0013 -1.0291 27 1 6.1422 0.8902 0.5115 28 1 6.1421 -0.8897 0.5134 29 1 5.2448 -2.3965 -0.5877 30 1 4.9167 -5.9616 0.7037 31 1 6.0599 -6.3138 -0.6147 32 1 6.1929 -4.7899 0.2950 33 1 2.4967 -5.4813 -2.7238 34 1 3.7279 -6.7501 -2.5193 35 1 2.5854 -6.3977 -1.2004 36 1 6.0423 -3.2231 -2.3084 37 1 5.9094 -4.7473 -3.2177 38 1 4.6781 -3.4781 -3.4230 39 1 6.1418 -3.3482 2.6396 40 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196455148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:08 Heat of formation + Delta-G solvation = -44.993179 kcal Electronic energy + Delta-G solvation = -18974.008352 eV Core-core repulsion = 16297.641719 eV Total energy + Delta-G solvation = -2676.366633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96067 -38.55220 -35.93209 -34.74846 -32.28344 -30.11948 -29.50347 -28.66091 -28.34493 -27.67463 -25.61409 -23.30221 -21.92900 -20.62281 -18.57668 -17.29981 -16.79475 -16.25101 -16.08323 -15.97356 -14.97127 -14.77732 -14.51870 -14.26574 -14.11764 -14.01047 -13.76203 -13.66693 -13.52763 -13.40539 -13.27145 -13.17637 -13.06330 -12.94002 -12.73693 -12.55164 -12.34052 -12.15258 -12.06207 -11.70437 -11.66918 -11.25894 -10.69761 -10.45288 -10.04717 -9.55257 -9.24262 0.31415 0.54527 0.69820 1.06182 1.42757 1.47178 1.72947 1.89114 1.93922 2.06487 2.49629 2.81457 3.47592 3.82488 3.92280 4.06536 4.17339 4.25187 4.35743 4.58063 4.64122 4.71558 4.72710 4.73431 4.76112 4.76498 4.78363 4.80307 4.81398 4.85254 4.92057 5.00708 5.12239 5.15777 5.25752 5.40832 5.50605 5.58338 5.64387 5.69315 5.77789 5.83807 6.17480 6.68378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.109 4.109 4 C -0.121 4.121 5 C -0.075 4.075 6 C -0.130 4.130 7 C -0.096 4.096 8 C 0.195 3.805 9 O -0.612 6.612 10 Si 1.255 2.745 11 C -0.517 4.517 12 C -0.467 4.467 13 C -0.508 4.508 14 C -0.023 4.023 15 N -0.611 5.611 16 Si 0.917 3.083 17 H -0.214 1.214 18 H -0.242 1.242 19 H -0.243 1.243 20 C -0.082 4.082 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.343 0.657 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 0.569 0.253 0.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.099 4.099 3 C -0.127 4.127 4 C -0.139 4.139 5 C -0.075 4.075 6 C -0.186 4.186 7 C -0.097 4.097 8 C 0.137 3.863 9 O -0.569 6.569 10 Si 1.393 2.607 11 C -0.619 4.619 12 C -0.573 4.573 13 C -0.610 4.610 14 C -0.272 4.272 15 N -0.227 5.227 16 Si 0.732 3.268 17 H -0.135 1.135 18 H -0.165 1.165 19 H -0.167 1.167 20 C -0.100 4.100 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.140 0.860 25 H 0.142 0.858 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.160 0.840 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.752 0.617 0.421 1.060 hybrid contribution 0.331 -0.366 0.316 0.586 sum -0.421 0.251 0.737 0.885 Atomic orbital electron populations 1.20794 0.91028 1.02839 1.02493 1.19964 0.96280 0.93047 1.00649 1.21100 0.94168 0.97676 0.99736 1.20980 0.94165 0.97321 1.01401 1.19703 0.96076 0.92318 0.99429 1.20979 0.91115 1.03669 1.02860 1.19364 0.94033 0.92390 1.03928 1.19260 0.91986 0.85022 0.89994 1.85382 1.52699 1.44475 1.74321 0.77240 0.60931 0.59493 0.63071 1.27158 1.12731 1.09200 1.12828 1.26312 1.11642 1.12177 1.07182 1.26949 1.10408 1.07619 1.16004 1.30822 0.99907 0.92971 1.03501 1.68072 1.20936 1.06932 1.26723 0.85748 0.81272 0.82154 0.77639 1.13499 1.16485 1.16651 1.20985 0.93221 0.98199 0.97577 0.91053 0.91444 0.91561 0.85980 0.85805 0.90789 0.91263 0.90472 0.89079 0.91591 0.91116 0.89483 0.90732 0.90511 0.90793 0.91279 0.90798 0.90943 0.83961 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.06 10.01 36.01 0.36 0.42 16 2 C -0.10 -0.13 5.88 -104.62 -0.62 -0.75 16 3 C -0.11 -0.10 9.70 -39.58 -0.38 -0.49 16 4 C -0.12 -0.12 9.70 -39.58 -0.38 -0.50 16 5 C -0.08 -0.10 5.88 -104.62 -0.62 -0.71 16 6 C -0.13 0.01 9.22 36.01 0.33 0.34 16 7 C -0.10 -0.16 4.29 -104.62 -0.45 -0.61 16 8 C 0.20 0.17 1.39 -29.03 -0.04 0.13 16 9 O -0.61 -0.33 6.75 -35.23 -0.24 -0.56 16 10 Si 1.26 -1.00 12.68 -169.99 -2.16 -3.16 16 11 C -0.52 -0.09 8.04 101.05 0.81 0.72 16 12 C -0.47 0.28 8.65 101.05 0.87 1.15 16 13 C -0.51 0.07 8.56 101.05 0.87 0.94 16 14 C -0.02 -0.02 3.38 -13.90 -0.05 -0.06 16 15 N -0.61 -0.21 11.19 56.23 0.63 0.42 16 16 Si 0.92 0.71 27.72 -169.99 -4.71 -4.00 16 17 H -0.21 -0.17 5.85 56.52 0.33 0.16 16 18 H -0.24 -0.23 7.11 56.52 0.40 0.17 16 19 H -0.24 -0.33 7.11 56.52 0.40 0.08 16 20 C -0.08 -0.14 7.28 -39.58 -0.29 -0.43 16 21 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 22 H 0.07 -0.06 8.08 -51.93 -0.42 -0.48 16 23 H 0.07 -0.08 8.09 -51.93 -0.42 -0.50 16 24 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 25 H 0.12 -0.08 8.06 -52.49 -0.42 -0.51 16 26 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.07 -0.06 8.09 -51.93 -0.42 -0.48 16 28 H 0.08 0.01 5.68 -51.93 -0.29 -0.28 16 29 H 0.09 0.01 4.96 -51.93 -0.26 -0.25 16 30 H 0.06 0.02 7.96 -51.92 -0.41 -0.39 16 31 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 32 H 0.09 0.07 5.71 -51.93 -0.30 -0.22 16 33 H 0.07 -0.04 7.96 -51.92 -0.41 -0.45 16 34 H 0.08 -0.08 7.96 -51.93 -0.41 -0.50 16 35 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 36 H 0.07 0.00 7.10 -51.93 -0.37 -0.37 16 37 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 38 H 0.07 0.01 7.96 -51.93 -0.41 -0.41 16 39 H 0.34 -0.41 8.23 -40.82 -0.34 -0.74 16 40 H 0.14 0.16 6.97 -52.49 -0.37 -0.21 16 LS Contribution 321.44 15.07 4.84 4.84 Total: 0.00 -2.66 321.44 -7.84 -10.50 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: -6.63 Total: -8.18 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 0.42 Total: 0.15 kcal Atomic # 7 Polarization: -0.21 SS G_CDS: 0.63 Total: 0.42 kcal Atomic # 8 Polarization: -0.33 SS G_CDS: -0.24 Total: -0.56 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: -6.87 Total: -7.16 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -2.66 -7.84 -10.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196455148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.493 kcal (2) G-P(sol) polarization free energy of solvation -2.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds