Wall clock time and date at job start Mon Mar 30 2020 06:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.25725 * 3 2 1 5 5 C 1.38258 * 119.99774 * 359.52161 * 4 3 2 6 6 C 1.50707 * 119.99972 * 180.23526 * 5 4 3 7 7 C 1.38211 * 120.00201 * 0.41152 * 5 4 3 8 8 C 1.50706 * 120.00280 * 179.82644 * 7 5 4 9 9 O 1.42895 * 109.47066 * 205.01901 * 8 7 5 10 10 Si 1.63101 * 113.99828 * 149.99904 * 9 8 7 11 11 C 1.86302 * 109.46897 * 60.00038 * 10 9 8 12 12 C 1.86292 * 109.47471 * 179.97438 * 10 9 8 13 13 C 1.86297 * 109.47338 * 300.00394 * 10 9 8 14 14 C 1.50700 * 109.46705 * 85.02032 * 8 7 5 15 15 N 1.27946 * 119.99824 * 234.99979 * 14 8 7 16 16 Si 1.86797 * 120.00168 * 55.00401 * 14 8 7 17 17 H 1.48500 * 109.47368 * 359.97438 * 16 14 8 18 18 H 1.48495 * 109.47495 * 119.99752 * 16 14 8 19 19 H 1.48506 * 109.47206 * 239.99595 * 16 14 8 20 20 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.46776 * 89.99934 * 1 2 3 22 22 H 1.08993 * 109.47429 * 210.00606 * 1 2 3 23 23 H 1.08998 * 109.46961 * 330.00857 * 1 2 3 24 24 H 1.08002 * 119.99676 * 359.97122 * 3 2 1 25 25 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 26 26 H 1.09004 * 109.47201 * 270.17114 * 6 5 4 27 27 H 1.08996 * 109.46896 * 30.17288 * 6 5 4 28 28 H 1.08999 * 109.46646 * 150.17148 * 6 5 4 29 29 H 1.09001 * 109.46968 * 325.02719 * 8 7 5 30 30 H 1.09007 * 109.47447 * 59.99991 * 11 10 9 31 31 H 1.09002 * 109.47301 * 180.02562 * 11 10 9 32 32 H 1.09006 * 109.47345 * 300.00047 * 11 10 9 33 33 H 1.09011 * 109.46829 * 60.00058 * 12 10 9 34 34 H 1.08997 * 109.47878 * 179.97438 * 12 10 9 35 35 H 1.08999 * 109.47232 * 300.00705 * 12 10 9 36 36 H 1.09006 * 109.47155 * 59.99799 * 13 10 9 37 37 H 1.09002 * 109.47170 * 179.97438 * 13 10 9 38 38 H 1.09002 * 109.47180 * 299.99632 * 13 10 9 39 39 H 0.97001 * 120.00094 * 180.02562 * 15 14 8 40 40 H 1.07996 * 120.00479 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 5.7787 -0.0002 -0.0013 7 6 3.5806 -1.1971 0.0006 8 6 4.3340 -2.5023 0.0017 9 8 3.5147 -3.5257 -0.5668 10 14 4.3528 -4.7025 -1.3236 11 6 5.4994 -5.5276 -0.1089 12 6 3.1679 -5.9638 -2.0131 13 6 5.3489 -3.9609 -2.7123 14 6 4.6923 -2.8742 1.4175 15 7 5.9111 -3.1084 1.7284 16 14 3.3571 -2.9933 2.7184 17 1 2.0411 -2.6768 2.1074 18 1 3.3275 -4.3705 3.2728 19 1 3.6412 -2.0265 3.8093 20 6 2.1980 -1.1970 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8898 0.5139 23 1 -0.3633 0.8900 0.5137 24 1 1.6584 2.1326 -0.0005 25 1 4.1205 2.1325 -0.0099 26 1 6.1418 -0.0013 -1.0291 27 1 6.1422 0.8902 0.5115 28 1 6.1421 -0.8897 0.5134 29 1 5.2448 -2.3965 -0.5877 30 1 4.9167 -5.9616 0.7037 31 1 6.0599 -6.3138 -0.6147 32 1 6.1929 -4.7899 0.2950 33 1 2.4967 -5.4813 -2.7238 34 1 3.7279 -6.7501 -2.5193 35 1 2.5854 -6.3977 -1.2004 36 1 6.0423 -3.2231 -2.3084 37 1 5.9094 -4.7473 -3.2177 38 1 4.6781 -3.4781 -3.4230 39 1 6.1418 -3.3482 2.6396 40 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196455148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:07 Heat of formation + Delta-G solvation = -32.001152 kcal Electronic energy + Delta-G solvation = -18973.444975 eV Core-core repulsion = 16297.641719 eV Total energy + Delta-G solvation = -2675.803256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98621 -38.57209 -35.95945 -34.75539 -32.31505 -30.09438 -29.47814 -28.63547 -28.33974 -27.68809 -25.60188 -23.34148 -21.96000 -20.65311 -18.60352 -17.32648 -16.81739 -16.29519 -16.10443 -15.98863 -14.99310 -14.78067 -14.55902 -14.25008 -14.07576 -13.98887 -13.76623 -13.66904 -13.51940 -13.39185 -13.22043 -13.16751 -13.05771 -12.96271 -12.70311 -12.57183 -12.33925 -12.18877 -12.06986 -11.75216 -11.69775 -11.27873 -10.67555 -10.45720 -10.08420 -9.60435 -9.27663 0.27071 0.49343 0.65201 1.00584 1.37343 1.44357 1.68527 1.86011 1.95690 2.10170 2.51607 2.77305 3.47374 3.79728 3.91666 4.07318 4.16380 4.23607 4.37777 4.56665 4.65450 4.71876 4.75771 4.77758 4.79967 4.80234 4.81035 4.82419 4.86135 4.87386 4.90297 4.99706 5.13454 5.19903 5.24700 5.41905 5.53140 5.59428 5.63132 5.68286 5.74353 5.79891 6.15017 6.69356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.111 4.111 3 C -0.118 4.118 4 C -0.128 4.128 5 C -0.086 4.086 6 C -0.129 4.129 7 C -0.105 4.105 8 C 0.192 3.808 9 O -0.618 6.618 10 Si 1.285 2.715 11 C -0.524 4.524 12 C -0.474 4.474 13 C -0.515 4.515 14 C -0.023 4.023 15 N -0.613 5.613 16 Si 0.926 3.074 17 H -0.216 1.216 18 H -0.244 1.244 19 H -0.252 1.252 20 C -0.096 4.096 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.137 0.863 25 H 0.138 0.862 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.351 0.649 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 0.753 0.082 1.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.111 4.111 3 C -0.135 4.135 4 C -0.146 4.146 5 C -0.086 4.086 6 C -0.185 4.185 7 C -0.106 4.106 8 C 0.135 3.865 9 O -0.576 6.576 10 Si 1.421 2.579 11 C -0.626 4.626 12 C -0.580 4.580 13 C -0.617 4.617 14 C -0.273 4.273 15 N -0.229 5.229 16 Si 0.742 3.258 17 H -0.137 1.137 18 H -0.168 1.168 19 H -0.176 1.176 20 C -0.113 4.113 21 H 0.094 0.906 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.155 0.845 25 H 0.156 0.844 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.169 0.831 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.692 0.795 0.254 1.084 hybrid contribution 0.325 -0.418 0.377 0.650 sum -0.367 0.377 0.631 0.822 Atomic orbital electron populations 1.20821 0.89991 1.03348 1.02927 1.20224 0.97245 0.93094 1.00493 1.21343 0.94422 0.98224 0.99558 1.21234 0.94437 0.97874 1.01075 1.19916 0.96807 0.92411 0.99505 1.20995 0.90343 1.03906 1.03294 1.19508 0.94166 0.92871 1.04043 1.19300 0.92131 0.84921 0.90171 1.85375 1.53112 1.44650 1.74434 0.76729 0.60195 0.58782 0.62188 1.27259 1.12910 1.09280 1.13115 1.26375 1.11800 1.12490 1.07311 1.27038 1.10551 1.07768 1.16310 1.30761 0.99847 0.93234 1.03409 1.68049 1.20784 1.06672 1.27403 0.85608 0.81321 0.81586 0.77313 1.13740 1.16771 1.17635 1.21106 0.93506 0.98509 0.98226 0.90598 0.91257 0.90745 0.84533 0.84383 0.90219 0.90475 0.90778 0.88525 0.91813 0.90810 0.90083 0.90747 0.89897 0.90775 0.91438 0.90437 0.91181 0.83090 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.11 10.01 71.24 0.71 0.82 16 2 C -0.11 -0.32 5.88 -19.86 -0.12 -0.44 16 3 C -0.12 -0.22 9.70 22.27 0.22 -0.01 16 4 C -0.13 -0.24 9.70 22.27 0.22 -0.03 16 5 C -0.09 -0.25 5.88 -19.86 -0.12 -0.36 16 6 C -0.13 0.02 9.22 71.24 0.66 0.68 16 7 C -0.10 -0.40 4.29 -19.86 -0.09 -0.48 16 8 C 0.19 0.42 1.39 29.10 0.04 0.46 16 9 O -0.62 -0.91 6.75 -148.98 -1.01 -1.92 16 10 Si 1.29 -1.85 12.68 68.60 0.87 -0.98 16 11 C -0.52 -0.26 8.04 113.37 0.91 0.66 16 12 C -0.47 0.59 8.65 113.37 0.98 1.57 16 13 C -0.52 0.10 8.56 113.37 0.97 1.07 16 14 C -0.02 -0.04 3.38 88.67 0.30 0.26 16 15 N -0.61 -0.58 11.19 24.11 0.27 -0.31 16 16 Si 0.93 2.01 27.72 68.60 1.90 3.91 16 17 H -0.22 -0.53 5.85 99.48 0.58 0.05 16 18 H -0.24 -0.59 7.11 99.48 0.71 0.12 16 19 H -0.25 -0.88 7.11 99.48 0.71 -0.18 16 20 C -0.10 -0.40 7.28 22.27 0.16 -0.23 16 21 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 22 H 0.07 -0.10 8.08 -2.39 -0.02 -0.12 16 23 H 0.07 -0.21 8.09 -2.39 -0.02 -0.23 16 24 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 25 H 0.14 -0.25 8.06 -2.91 -0.02 -0.28 16 26 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.08 -0.15 8.09 -2.39 -0.02 -0.17 16 28 H 0.07 0.03 5.68 -2.39 -0.01 0.02 16 29 H 0.10 0.06 4.96 -2.39 -0.01 0.05 16 30 H 0.06 0.06 7.96 -2.38 -0.02 0.04 16 31 H 0.07 -0.02 7.96 -2.39 -0.02 -0.04 16 32 H 0.08 0.15 5.71 -2.38 -0.01 0.14 16 33 H 0.07 -0.08 7.96 -2.38 -0.02 -0.10 16 34 H 0.08 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 36 H 0.07 0.01 7.10 -2.38 -0.02 -0.01 16 37 H 0.08 -0.08 7.96 -2.39 -0.02 -0.10 16 38 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 39 H 0.35 -0.75 8.23 -92.71 -0.76 -1.51 16 40 H 0.14 0.44 6.97 -2.91 -0.02 0.42 16 Total: 0.00 -5.89 321.44 7.76 1.87 By element: Atomic # 1 Polarization: -3.69 SS G_CDS: 0.88 Total: -2.81 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 4.85 Total: 3.97 kcal Atomic # 7 Polarization: -0.58 SS G_CDS: 0.27 Total: -0.31 kcal Atomic # 8 Polarization: -0.91 SS G_CDS: -1.01 Total: -1.92 kcal Atomic # 14 Polarization: 0.16 SS G_CDS: 2.77 Total: 2.93 kcal Total: -5.89 7.76 1.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196455148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.875 kcal (2) G-P(sol) polarization free energy of solvation -5.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 1.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds