Wall clock time and date at job start Mon Mar 30 2020 06:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 119.99997 * 2 1 4 4 C 1.38211 * 119.99784 * 180.23526 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.50703 * 120.00325 * 180.27920 * 5 4 3 7 7 O 1.42900 * 109.47029 * 325.00714 * 6 5 4 8 8 Si 1.63094 * 113.99995 * 209.99868 * 7 6 5 9 9 C 1.86296 * 109.47590 * 59.99596 * 8 7 6 10 10 C 1.86303 * 109.47162 * 179.97438 * 8 7 6 11 11 C 1.86305 * 109.46952 * 299.99619 * 8 7 6 12 12 C 1.50704 * 109.46633 * 84.99965 * 6 5 4 13 13 N 1.27950 * 119.99684 * 130.00545 * 12 6 5 14 14 Si 1.86797 * 120.00566 * 310.00566 * 12 6 5 15 15 H 1.48506 * 109.46892 * 359.97438 * 14 12 6 16 16 H 1.48497 * 109.47404 * 119.99711 * 14 12 6 17 17 H 1.48506 * 109.46822 * 240.00275 * 14 12 6 18 18 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 19 19 C 1.38212 * 119.99856 * 179.71368 * 2 1 3 20 20 C 1.50706 * 120.00275 * 0.02562 * 19 2 1 21 21 H 1.09003 * 109.47135 * 270.28406 * 1 2 3 22 22 H 1.09000 * 109.46785 * 30.28531 * 1 2 3 23 23 H 1.09002 * 109.47199 * 150.28503 * 1 2 3 24 24 H 1.07998 * 119.99823 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 26 26 H 1.08995 * 109.47590 * 205.00318 * 6 5 4 27 27 H 1.09002 * 109.46998 * 59.99812 * 9 8 7 28 28 H 1.08996 * 109.47475 * 180.02562 * 9 8 7 29 29 H 1.09001 * 109.47095 * 300.00831 * 9 8 7 30 30 H 1.09005 * 109.46995 * 60.00006 * 10 8 7 31 31 H 1.09004 * 109.46718 * 179.97438 * 10 8 7 32 32 H 1.08993 * 109.47289 * 299.99518 * 10 8 7 33 33 H 1.09003 * 109.46916 * 60.00288 * 11 8 7 34 34 H 1.08996 * 109.47265 * 179.97438 * 11 8 7 35 35 H 1.08999 * 109.47242 * 299.99862 * 11 8 7 36 36 H 0.96993 * 120.00084 * 180.02562 * 13 12 6 37 37 H 1.07997 * 120.00449 * 180.02562 * 18 5 4 38 38 H 1.09004 * 109.46442 * 270.02096 * 20 19 2 39 39 H 1.09000 * 109.46849 * 30.01503 * 20 19 2 40 40 H 1.08993 * 109.47102 * 150.01800 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 0.0000 0.0011 6 6 5.7788 -0.0001 0.0021 7 8 6.2557 1.1000 -0.7753 8 14 7.6938 0.8294 -1.4954 9 6 7.5492 -0.6320 -2.6417 10 6 8.1931 2.3361 -2.4709 11 6 8.9816 0.4750 -0.1967 12 6 6.2801 0.1302 1.4173 13 7 7.1645 -0.6815 1.8600 14 14 5.6102 1.4767 2.5253 15 1 4.6055 2.2769 1.7799 16 1 4.9706 0.8644 3.7174 17 1 6.7226 2.3598 2.9590 18 6 3.5807 -1.1970 0.0065 19 6 2.1981 -1.1970 0.0060 20 6 1.4446 -2.5021 0.0119 21 1 -0.3633 0.0051 1.0277 22 1 -0.3633 0.8874 -0.5183 23 1 -0.3634 -0.8925 -0.5094 24 1 1.6583 2.1326 -0.0004 25 1 4.1205 2.1326 -0.0088 26 1 6.1424 -0.9334 -0.4277 27 1 6.7957 -0.4246 -3.4016 28 1 8.5105 -0.8131 -3.1226 29 1 7.2568 -1.5136 -2.0713 30 1 8.2776 3.1914 -1.8005 31 1 9.1545 2.1553 -2.9518 32 1 7.4396 2.5431 -3.2308 33 1 8.6893 -0.4067 0.3737 34 1 9.9426 0.2937 -0.6779 35 1 9.0663 1.3300 0.4740 36 1 7.4869 -0.5979 2.7709 37 1 4.1206 -2.1323 0.0116 38 1 1.2623 -2.8116 1.0411 39 1 0.4925 -2.3743 -0.5031 40 1 2.0340 -3.2642 -0.4977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196769866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:42 Heat of formation + Delta-G solvation = -28.008604 kcal Electronic energy + Delta-G solvation = -18638.564671 eV Core-core repulsion = 15962.934545 eV Total energy + Delta-G solvation = -2675.630126 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88530 -38.76514 -35.88748 -34.32438 -33.06405 -29.66236 -29.46744 -28.39235 -28.31767 -27.92583 -25.93302 -23.03651 -22.12193 -20.54286 -18.60838 -17.44862 -16.83944 -16.34395 -16.08845 -15.97629 -15.07679 -14.82565 -14.65302 -14.25398 -14.06731 -13.90791 -13.74291 -13.57660 -13.51371 -13.45866 -13.21718 -13.08527 -12.99368 -12.94962 -12.73106 -12.65605 -12.36577 -12.08920 -11.99784 -11.69947 -11.51255 -11.36803 -10.66603 -10.42981 -10.00462 -9.61056 -9.29396 0.24854 0.50587 0.66053 1.03069 1.39008 1.46554 1.71400 1.86187 1.96952 2.11678 2.53148 2.77615 3.48166 3.81430 3.92525 4.05684 4.18694 4.20902 4.35396 4.53134 4.67727 4.74181 4.76273 4.77674 4.78027 4.80479 4.81086 4.82843 4.89087 4.92243 4.95079 5.03037 5.03982 5.15380 5.31570 5.41207 5.53946 5.57720 5.62162 5.71349 5.77871 5.79133 6.14861 6.69880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.090 4.090 3 C -0.134 4.134 4 C -0.100 4.100 5 C -0.108 4.108 6 C 0.194 3.806 7 O -0.618 6.618 8 Si 1.290 2.710 9 C -0.515 4.515 10 C -0.475 4.475 11 C -0.527 4.527 12 C -0.025 4.025 13 N -0.616 5.616 14 Si 0.925 3.075 15 H -0.203 1.203 16 H -0.255 1.255 17 H -0.249 1.249 18 C -0.110 4.110 19 C -0.102 4.102 20 C -0.118 4.118 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.136 0.864 25 H 0.140 0.860 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.349 0.651 37 H 0.134 0.866 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 -0.109 0.108 2.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.090 4.090 3 C -0.152 4.152 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.136 3.864 7 O -0.575 6.575 8 Si 1.426 2.574 9 C -0.617 4.617 10 C -0.581 4.581 11 C -0.628 4.628 12 C -0.274 4.274 13 N -0.233 5.233 14 Si 0.741 3.259 15 H -0.125 1.125 16 H -0.179 1.179 17 H -0.173 1.173 18 C -0.128 4.128 19 C -0.102 4.102 20 C -0.174 4.174 21 H 0.095 0.905 22 H 0.091 0.909 23 H 0.096 0.904 24 H 0.154 0.846 25 H 0.157 0.843 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.168 0.832 37 H 0.152 0.848 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.042 -0.104 0.269 2.062 hybrid contribution 0.739 0.046 0.437 0.859 sum -1.304 -0.058 0.705 1.483 Atomic orbital electron populations 1.20928 0.90004 1.03662 1.02977 1.20139 0.97171 0.92706 0.98983 1.21294 0.94206 0.98322 1.01379 1.21276 0.94221 0.98521 0.97772 1.19599 0.93456 0.94062 1.03754 1.19284 0.90671 0.89294 0.87166 1.85393 1.59683 1.46287 1.66138 0.76645 0.53555 0.64575 0.62647 1.27041 1.04824 1.17235 1.12570 1.26392 1.06211 1.15900 1.09553 1.27319 1.14903 1.05817 1.14755 1.30838 0.94679 1.00187 1.01718 1.68051 1.08486 1.25223 1.21496 0.85690 0.82547 0.79209 0.78454 1.12474 1.17859 1.17279 1.21039 0.93920 0.97721 1.00142 1.19979 0.93580 0.95898 1.00771 1.20897 1.00410 0.93158 1.02918 0.90529 0.90945 0.90360 0.84613 0.84275 0.88738 0.91172 0.90533 0.91441 0.90843 0.89970 0.90777 0.89727 0.91037 0.92031 0.83240 0.84818 0.90665 0.90314 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.26 9.60 71.24 0.68 0.94 16 2 C -0.09 -0.18 5.88 -19.86 -0.12 -0.30 16 3 C -0.13 -0.32 9.70 22.27 0.22 -0.11 16 4 C -0.10 -0.34 7.01 22.27 0.16 -0.18 16 5 C -0.11 -0.34 4.41 -19.86 -0.09 -0.43 16 6 C 0.19 0.38 2.11 29.10 0.06 0.44 16 7 O -0.62 -0.91 7.20 -148.98 -1.07 -1.98 16 8 Si 1.29 -1.50 12.68 68.60 0.87 -0.63 16 9 C -0.52 -0.03 8.56 113.37 0.97 0.94 16 10 C -0.47 0.40 8.65 113.37 0.98 1.38 16 11 C -0.53 -0.62 7.98 113.37 0.90 0.28 16 12 C -0.02 -0.05 4.12 88.68 0.37 0.32 16 13 N -0.62 -1.09 11.40 24.11 0.27 -0.82 16 14 Si 0.92 1.56 27.43 68.60 1.88 3.44 16 15 H -0.20 -0.19 4.80 99.48 0.48 0.29 16 16 H -0.25 -0.83 7.11 99.48 0.71 -0.13 16 17 H -0.25 -0.62 7.11 99.48 0.71 0.09 16 18 C -0.11 -0.27 9.34 22.27 0.21 -0.06 16 19 C -0.10 -0.21 5.88 -19.86 -0.12 -0.33 16 20 C -0.12 0.23 9.60 71.24 0.68 0.92 16 21 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 22 H 0.07 -0.24 8.09 -2.39 -0.02 -0.26 16 23 H 0.08 -0.29 5.95 -2.39 -0.01 -0.30 16 24 H 0.14 -0.13 8.06 -2.91 -0.02 -0.16 16 25 H 0.14 0.29 6.36 -2.91 -0.02 0.27 16 26 H 0.10 0.02 6.03 -2.39 -0.01 0.00 16 27 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 28 H 0.08 -0.05 7.96 -2.39 -0.02 -0.07 16 29 H 0.07 0.02 7.10 -2.39 -0.02 0.01 16 30 H 0.07 -0.05 7.96 -2.38 -0.02 -0.07 16 31 H 0.08 -0.17 7.96 -2.38 -0.02 -0.19 16 32 H 0.07 -0.05 7.96 -2.39 -0.02 -0.07 16 33 H 0.08 0.23 5.48 -2.39 -0.01 0.22 16 34 H 0.07 0.03 7.96 -2.39 -0.02 0.02 16 35 H 0.06 0.10 7.96 -2.39 -0.02 0.09 16 36 H 0.35 -0.43 8.23 -92.71 -0.76 -1.19 16 37 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 38 H 0.07 -0.22 8.14 -2.38 -0.02 -0.23 16 39 H 0.08 -0.28 5.95 -2.39 -0.01 -0.30 16 40 H 0.07 -0.21 8.08 -2.39 -0.02 -0.23 16 Total: 0.00 -6.37 319.99 7.64 1.28 By element: Atomic # 1 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 4.91 Total: 3.81 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: 0.27 Total: -0.82 kcal Atomic # 8 Polarization: -0.91 SS G_CDS: -1.07 Total: -1.98 kcal Atomic # 14 Polarization: 0.05 SS G_CDS: 2.75 Total: 2.81 kcal Total: -6.37 7.64 1.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196769866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.286 kcal (2) G-P(sol) polarization free energy of solvation -6.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 1.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds