Wall clock time and date at job start Mon Mar 30 2020 06:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38258 * 119.99998 * 2 1 4 4 C 1.38211 * 119.99779 * 180.27916 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.50247 * 4 3 2 6 6 C 1.38215 * 120.00141 * 0.28711 * 5 4 3 7 7 C 1.50700 * 120.00262 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.46726 * 334.99487 * 7 6 5 9 9 Si 1.63098 * 113.99892 * 210.00341 * 8 7 6 10 10 C 1.86302 * 109.47265 * 59.99896 * 9 8 7 11 11 C 1.86302 * 109.47405 * 180.02562 * 9 8 7 12 12 C 1.86302 * 109.47128 * 300.00245 * 9 8 7 13 13 C 1.50698 * 109.47258 * 94.99621 * 7 6 5 14 14 N 1.27938 * 119.99819 * 130.00350 * 13 7 6 15 15 Si 1.86800 * 120.00160 * 309.99758 * 13 7 6 16 16 H 1.48503 * 109.46756 * 60.00205 * 15 13 7 17 17 H 1.48495 * 109.47291 * 180.02562 * 15 13 7 18 18 H 1.48500 * 109.47022 * 300.00567 * 15 13 7 19 19 C 1.38211 * 119.99817 * 179.82936 * 2 1 3 20 20 C 1.50697 * 120.00242 * 359.97438 * 19 2 1 21 21 H 1.08998 * 109.47249 * 270.17007 * 1 2 3 22 22 H 1.09000 * 109.46720 * 30.17232 * 1 2 3 23 23 H 1.09004 * 109.46752 * 150.17214 * 1 2 3 24 24 H 1.07998 * 119.99837 * 0.05959 * 3 2 1 25 25 H 1.08002 * 120.00200 * 179.78851 * 4 3 2 26 26 H 1.07999 * 120.00077 * 180.25932 * 5 4 3 27 27 H 1.08996 * 109.46902 * 214.99947 * 7 6 5 28 28 H 1.08998 * 109.47064 * 60.00055 * 10 9 8 29 29 H 1.09001 * 109.47186 * 180.02562 * 10 9 8 30 30 H 1.08990 * 109.47320 * 300.00146 * 10 9 8 31 31 H 1.09000 * 109.46782 * 59.99540 * 11 9 8 32 32 H 1.09001 * 109.47221 * 179.97438 * 11 9 8 33 33 H 1.08998 * 109.46838 * 299.99892 * 11 9 8 34 34 H 1.08994 * 109.47482 * 59.99606 * 12 9 8 35 35 H 1.08996 * 109.47138 * 180.02562 * 12 9 8 36 36 H 1.09004 * 109.47011 * 299.99849 * 12 9 8 37 37 H 0.97000 * 120.00087 * 179.97438 * 14 13 7 38 38 H 1.08997 * 109.47663 * 269.98143 * 20 19 2 39 39 H 1.09008 * 109.47044 * 29.98298 * 20 19 2 40 40 H 1.08996 * 109.47325 * 149.97679 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0058 5 6 4.2717 0.0000 -0.0013 6 6 3.5807 -1.1970 0.0031 7 6 4.3342 -2.5021 0.0075 8 8 5.6296 -2.3061 -0.5630 9 14 6.2288 -3.6227 -1.3164 10 6 5.0869 -4.1186 -2.7024 11 6 7.9129 -3.2293 -2.0090 12 6 6.3712 -5.0245 -0.0976 13 6 4.4786 -2.9941 1.4246 14 7 4.1612 -4.1979 1.7193 15 14 5.1211 -1.8462 2.7509 16 1 4.2193 -0.6723 2.8688 17 1 5.1688 -2.5667 4.0485 18 1 6.4864 -1.3873 2.3895 19 6 2.1981 -1.1970 0.0036 20 6 1.4446 -2.5020 0.0080 21 1 -0.3634 0.0031 1.0276 22 1 -0.3633 0.8885 -0.5165 23 1 -0.3633 -0.8916 -0.5112 24 1 1.6583 2.1326 0.0010 25 1 4.1205 2.1326 -0.0093 26 1 5.3517 0.0000 -0.0016 27 1 3.7866 -3.2397 -0.5792 28 1 5.0036 -3.2985 -3.4155 29 1 5.4872 -4.9988 -3.2056 30 1 4.1019 -4.3489 -2.2969 31 1 8.5807 -2.9394 -1.1978 32 1 8.3135 -4.1094 -2.5121 33 1 7.8299 -2.4090 -2.7220 34 1 5.3862 -5.2549 0.3080 35 1 6.7721 -5.9043 -0.6010 36 1 7.0393 -4.7344 0.7134 37 1 4.2545 -4.5147 2.6313 38 1 1.2636 -2.8136 1.0367 39 1 0.4918 -2.3733 -0.5056 40 1 2.0333 -3.2632 -0.5039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203416371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:54 Heat of formation + Delta-G solvation = -40.185336 kcal Electronic energy + Delta-G solvation = -19006.787683 eV Core-core repulsion = 16330.629534 eV Total energy + Delta-G solvation = -2676.158149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.01596 -38.59454 -35.88357 -34.21229 -33.42775 -29.52016 -29.05731 -28.49873 -28.30749 -27.48798 -26.98747 -22.70944 -21.70247 -20.77197 -18.67168 -17.37580 -16.96474 -16.25125 -16.11819 -15.95152 -15.09863 -14.74771 -14.55602 -14.24911 -14.06364 -13.81724 -13.73326 -13.70474 -13.51840 -13.44972 -13.25922 -13.16994 -13.04175 -12.92207 -12.73910 -12.63333 -12.41218 -12.17801 -11.99063 -11.68226 -11.58046 -11.27955 -10.67972 -10.41840 -9.99493 -9.46988 -9.36418 0.33648 0.52788 0.70650 1.06429 1.39865 1.45775 1.79224 1.90421 1.93861 2.08579 2.51621 2.82318 3.48791 3.79003 3.92621 4.04460 4.11541 4.19681 4.35633 4.49622 4.61390 4.67762 4.73571 4.74107 4.76478 4.78515 4.80943 4.82195 4.84132 4.88889 4.96668 4.99077 5.00717 5.16909 5.22838 5.40814 5.51655 5.59089 5.68875 5.73834 5.74765 5.83702 6.16786 6.69841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.090 4.090 3 C -0.110 4.110 4 C -0.126 4.126 5 C -0.092 4.092 6 C -0.095 4.095 7 C 0.194 3.806 8 O -0.612 6.612 9 Si 1.256 2.744 10 C -0.508 4.508 11 C -0.467 4.467 12 C -0.518 4.518 13 C -0.022 4.022 14 N -0.610 5.610 15 Si 0.919 3.081 16 H -0.227 1.227 17 H -0.251 1.251 18 H -0.224 1.224 19 C -0.072 4.072 20 C -0.126 4.126 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.137 0.863 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.343 0.657 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 0.652 0.353 1.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.090 4.090 3 C -0.128 4.128 4 C -0.144 4.144 5 C -0.110 4.110 6 C -0.096 4.096 7 C 0.136 3.864 8 O -0.569 6.569 9 Si 1.393 2.607 10 C -0.610 4.610 11 C -0.573 4.573 12 C -0.620 4.620 13 C -0.272 4.272 14 N -0.225 5.225 15 Si 0.734 3.266 16 H -0.149 1.149 17 H -0.174 1.174 18 H -0.146 1.146 19 C -0.072 4.072 20 C -0.182 4.182 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.140 0.860 25 H 0.142 0.858 26 H 0.154 0.846 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.161 0.839 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.960 0.661 0.517 1.275 hybrid contribution 0.294 -0.365 0.337 0.577 sum -0.667 0.296 0.853 1.123 Atomic orbital electron populations 1.20869 0.91079 1.03032 1.02476 1.19718 0.96066 0.92405 1.00772 1.21102 0.94401 0.97488 0.99804 1.21180 0.94257 0.98162 1.00778 1.21028 1.00923 0.91198 0.97884 1.19370 0.92546 0.93998 1.03639 1.19298 0.82576 0.94491 0.90019 1.85385 1.33910 1.63280 1.74333 0.77236 0.65133 0.55254 0.63073 1.26951 1.11866 1.06172 1.15985 1.26318 1.18272 1.05563 1.07190 1.27187 1.06116 1.15898 1.12818 1.30753 0.94775 0.97989 1.03666 1.68056 1.11435 1.15509 1.27547 0.85809 0.83605 0.80901 0.76304 1.14934 1.17450 1.14644 1.19524 0.92485 0.95293 0.99893 1.20987 1.00377 0.94069 1.02801 0.91099 0.91487 0.91038 0.85973 0.85754 0.84567 0.88985 0.90962 0.90793 0.91336 0.90828 0.90532 0.90762 0.89010 0.91253 0.91693 0.83920 0.90833 0.90797 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.09 9.60 36.01 0.35 0.44 16 2 C -0.09 -0.10 5.88 -104.62 -0.62 -0.72 16 3 C -0.11 -0.11 9.70 -39.58 -0.38 -0.49 16 4 C -0.13 -0.13 10.05 -39.58 -0.40 -0.53 16 5 C -0.09 -0.15 8.00 -39.58 -0.32 -0.46 16 6 C -0.09 -0.16 4.15 -104.62 -0.43 -0.59 16 7 C 0.19 0.18 1.58 -29.04 -0.05 0.13 16 8 O -0.61 -0.43 6.89 -35.23 -0.24 -0.68 16 9 Si 1.26 -0.80 12.68 -169.99 -2.16 -2.96 16 10 C -0.51 0.04 8.56 101.05 0.87 0.90 16 11 C -0.47 0.17 8.65 101.05 0.87 1.04 16 12 C -0.52 -0.16 7.98 101.05 0.81 0.65 16 13 C -0.02 -0.02 4.12 -13.90 -0.06 -0.07 16 14 N -0.61 -0.22 11.40 56.22 0.64 0.42 16 15 Si 0.92 0.84 27.19 -169.99 -4.62 -3.79 16 16 H -0.23 -0.37 7.11 56.52 0.40 0.03 16 17 H -0.25 -0.22 7.11 56.52 0.40 0.19 16 18 H -0.22 -0.25 7.11 56.52 0.40 0.15 16 19 C -0.07 -0.10 5.88 -104.63 -0.62 -0.71 16 20 C -0.13 0.03 9.20 36.00 0.33 0.36 16 21 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 22 H 0.07 -0.09 8.09 -51.93 -0.42 -0.51 16 23 H 0.07 -0.10 5.95 -51.93 -0.31 -0.41 16 24 H 0.12 -0.08 8.06 -52.49 -0.42 -0.51 16 25 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 26 H 0.14 0.10 7.35 -52.49 -0.39 -0.29 16 27 H 0.09 0.01 4.15 -51.93 -0.22 -0.21 16 28 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 29 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 30 H 0.07 0.00 7.10 -51.93 -0.37 -0.37 16 31 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 32 H 0.08 -0.07 7.96 -51.93 -0.41 -0.48 16 33 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 34 H 0.09 0.08 5.48 -51.93 -0.28 -0.20 16 35 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 36 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 37 H 0.34 -0.36 8.23 -40.82 -0.34 -0.69 16 38 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 39 H 0.07 -0.09 5.95 -51.92 -0.31 -0.40 16 40 H 0.07 -0.03 6.03 -51.93 -0.31 -0.35 16 LS Contribution 319.29 15.07 4.81 4.81 Total: 0.00 -2.75 319.29 -7.53 -10.29 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: -6.32 Total: -8.04 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.36 Total: -0.06 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: 0.64 Total: 0.42 kcal Atomic # 8 Polarization: -0.43 SS G_CDS: -0.24 Total: -0.68 kcal Atomic # 14 Polarization: 0.04 SS G_CDS: -6.78 Total: -6.74 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -2.75 -7.53 -10.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203416371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.898 kcal (2) G-P(sol) polarization free energy of solvation -2.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds