Wall clock time and date at job start Mon Mar 30 2020 06:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38258 * 119.99998 * 2 1 4 4 C 1.38211 * 119.99779 * 180.27916 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.50247 * 4 3 2 6 6 C 1.38215 * 120.00141 * 0.28711 * 5 4 3 7 7 C 1.50700 * 120.00262 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.46726 * 334.99487 * 7 6 5 9 9 Si 1.63098 * 113.99892 * 210.00341 * 8 7 6 10 10 C 1.86302 * 109.47265 * 59.99896 * 9 8 7 11 11 C 1.86302 * 109.47405 * 180.02562 * 9 8 7 12 12 C 1.86302 * 109.47128 * 300.00245 * 9 8 7 13 13 C 1.50698 * 109.47258 * 94.99621 * 7 6 5 14 14 N 1.27938 * 119.99819 * 130.00350 * 13 7 6 15 15 Si 1.86800 * 120.00160 * 309.99758 * 13 7 6 16 16 H 1.48503 * 109.46756 * 60.00205 * 15 13 7 17 17 H 1.48495 * 109.47291 * 180.02562 * 15 13 7 18 18 H 1.48500 * 109.47022 * 300.00567 * 15 13 7 19 19 C 1.38211 * 119.99817 * 179.82936 * 2 1 3 20 20 C 1.50697 * 120.00242 * 359.97438 * 19 2 1 21 21 H 1.08998 * 109.47249 * 270.17007 * 1 2 3 22 22 H 1.09000 * 109.46720 * 30.17232 * 1 2 3 23 23 H 1.09004 * 109.46752 * 150.17214 * 1 2 3 24 24 H 1.07998 * 119.99837 * 0.05959 * 3 2 1 25 25 H 1.08002 * 120.00200 * 179.78851 * 4 3 2 26 26 H 1.07999 * 120.00077 * 180.25932 * 5 4 3 27 27 H 1.08996 * 109.46902 * 214.99947 * 7 6 5 28 28 H 1.08998 * 109.47064 * 60.00055 * 10 9 8 29 29 H 1.09001 * 109.47186 * 180.02562 * 10 9 8 30 30 H 1.08990 * 109.47320 * 300.00146 * 10 9 8 31 31 H 1.09000 * 109.46782 * 59.99540 * 11 9 8 32 32 H 1.09001 * 109.47221 * 179.97438 * 11 9 8 33 33 H 1.08998 * 109.46838 * 299.99892 * 11 9 8 34 34 H 1.08994 * 109.47482 * 59.99606 * 12 9 8 35 35 H 1.08996 * 109.47138 * 180.02562 * 12 9 8 36 36 H 1.09004 * 109.47011 * 299.99849 * 12 9 8 37 37 H 0.97000 * 120.00087 * 179.97438 * 14 13 7 38 38 H 1.08997 * 109.47663 * 269.98143 * 20 19 2 39 39 H 1.09008 * 109.47044 * 29.98298 * 20 19 2 40 40 H 1.08996 * 109.47325 * 149.97679 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0058 5 6 4.2717 0.0000 -0.0013 6 6 3.5807 -1.1970 0.0031 7 6 4.3342 -2.5021 0.0075 8 8 5.6296 -2.3061 -0.5630 9 14 6.2288 -3.6227 -1.3164 10 6 5.0869 -4.1186 -2.7024 11 6 7.9129 -3.2293 -2.0090 12 6 6.3712 -5.0245 -0.0976 13 6 4.4786 -2.9941 1.4246 14 7 4.1612 -4.1979 1.7193 15 14 5.1211 -1.8462 2.7509 16 1 4.2193 -0.6723 2.8688 17 1 5.1688 -2.5667 4.0485 18 1 6.4864 -1.3873 2.3895 19 6 2.1981 -1.1970 0.0036 20 6 1.4446 -2.5020 0.0080 21 1 -0.3634 0.0031 1.0276 22 1 -0.3633 0.8885 -0.5165 23 1 -0.3633 -0.8916 -0.5112 24 1 1.6583 2.1326 0.0010 25 1 4.1205 2.1326 -0.0093 26 1 5.3517 0.0000 -0.0016 27 1 3.7866 -3.2397 -0.5792 28 1 5.0036 -3.2985 -3.4155 29 1 5.4872 -4.9988 -3.2056 30 1 4.1019 -4.3489 -2.2969 31 1 8.5807 -2.9394 -1.1978 32 1 8.3135 -4.1094 -2.5121 33 1 7.8299 -2.4090 -2.7220 34 1 5.3862 -5.2549 0.3080 35 1 6.7721 -5.9043 -0.6010 36 1 7.0393 -4.7344 0.7134 37 1 4.2545 -4.5147 2.6313 38 1 1.2636 -2.8136 1.0367 39 1 0.4918 -2.3733 -0.5056 40 1 2.0333 -3.2632 -0.5039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203416371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:54 Heat of formation + Delta-G solvation = -27.465721 kcal Electronic energy + Delta-G solvation = -19006.236119 eV Core-core repulsion = 16330.629534 eV Total energy + Delta-G solvation = -2675.606585 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.03624 -38.61603 -35.91713 -34.21318 -33.43905 -29.50339 -29.04454 -28.47128 -28.30943 -27.49514 -26.98277 -22.74305 -21.71939 -20.80440 -18.70167 -17.39977 -16.99462 -16.29503 -16.12767 -15.96567 -15.08057 -14.75895 -14.61294 -14.24547 -14.04921 -13.81718 -13.73553 -13.65667 -13.51832 -13.42464 -13.22135 -13.16171 -13.05116 -12.94356 -12.69166 -12.67023 -12.42731 -12.20204 -12.01170 -11.68049 -11.63673 -11.29942 -10.66961 -10.42949 -10.03529 -9.51269 -9.39983 0.29023 0.48173 0.65855 0.99848 1.31210 1.44601 1.73762 1.84545 1.95823 2.11477 2.52635 2.78226 3.48101 3.76961 3.93398 4.04325 4.11425 4.21726 4.37372 4.52006 4.62427 4.73051 4.75868 4.77575 4.77777 4.80167 4.83156 4.83753 4.85736 4.91034 4.95664 5.01208 5.04600 5.17539 5.24340 5.43938 5.53662 5.61215 5.64651 5.71588 5.72813 5.80122 6.15065 6.70164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.101 4.101 3 C -0.121 4.121 4 C -0.135 4.135 5 C -0.107 4.107 6 C -0.104 4.104 7 C 0.191 3.809 8 O -0.620 6.620 9 Si 1.285 2.715 10 C -0.515 4.515 11 C -0.475 4.475 12 C -0.525 4.525 13 C -0.022 4.022 14 N -0.610 5.610 15 Si 0.928 3.072 16 H -0.240 1.240 17 H -0.249 1.249 18 H -0.229 1.229 19 C -0.084 4.084 20 C -0.126 4.126 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.136 0.864 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.351 0.649 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 0.470 0.218 1.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.101 4.101 3 C -0.139 4.139 4 C -0.153 4.153 5 C -0.125 4.125 6 C -0.105 4.105 7 C 0.133 3.867 8 O -0.577 6.577 9 Si 1.421 2.579 10 C -0.616 4.616 11 C -0.581 4.581 12 C -0.626 4.626 13 C -0.272 4.272 14 N -0.226 5.226 15 Si 0.744 3.256 16 H -0.163 1.163 17 H -0.173 1.173 18 H -0.152 1.152 19 C -0.084 4.084 20 C -0.182 4.182 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.096 0.904 24 H 0.154 0.846 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.169 0.831 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.250 0.467 0.390 1.391 hybrid contribution 0.387 -0.299 0.385 0.622 sum -0.864 0.168 0.775 1.173 Atomic orbital electron populations 1.20898 0.89855 1.03672 1.02913 1.20021 0.97151 0.92445 1.00483 1.21360 0.94589 0.98191 0.99739 1.21426 0.94618 0.98665 1.00575 1.21182 1.01247 0.91590 0.98447 1.19527 0.92917 0.94297 1.03782 1.19347 0.82672 0.94431 0.90209 1.85378 1.33916 1.63949 1.74465 0.76729 0.64566 0.54354 0.62247 1.27030 1.12059 1.06291 1.16235 1.26392 1.18519 1.05872 1.07285 1.27283 1.05748 1.16524 1.13094 1.30667 0.95027 0.97949 1.03523 1.68032 1.11120 1.15283 1.28199 0.85677 0.82961 0.80453 0.76502 1.16323 1.17273 1.15175 1.19757 0.92615 0.96066 0.99948 1.21016 1.00698 0.93408 1.03079 0.90684 0.90861 0.90402 0.84593 0.84358 0.84319 0.88316 0.91211 0.90420 0.91396 0.90926 0.89904 0.90803 0.89537 0.90958 0.91908 0.83078 0.90630 0.89828 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.22 9.60 71.24 0.68 0.90 16 2 C -0.10 -0.25 5.88 -19.86 -0.12 -0.36 16 3 C -0.12 -0.27 9.70 22.27 0.22 -0.05 16 4 C -0.13 -0.35 10.05 22.27 0.22 -0.13 16 5 C -0.11 -0.42 8.00 22.27 0.18 -0.25 16 6 C -0.10 -0.41 4.15 -19.86 -0.08 -0.49 16 7 C 0.19 0.43 1.58 29.10 0.05 0.47 16 8 O -0.62 -1.13 6.89 -148.98 -1.03 -2.16 16 9 Si 1.29 -1.48 12.68 68.60 0.87 -0.61 16 10 C -0.51 0.07 8.56 113.37 0.97 1.04 16 11 C -0.47 0.34 8.65 113.37 0.98 1.32 16 12 C -0.52 -0.33 7.98 113.37 0.90 0.57 16 13 C -0.02 -0.04 4.12 88.67 0.37 0.33 16 14 N -0.61 -0.46 11.40 24.11 0.27 -0.19 16 15 Si 0.93 2.26 27.19 68.60 1.87 4.13 16 16 H -0.24 -1.07 7.11 99.48 0.71 -0.37 16 17 H -0.25 -0.48 7.11 99.48 0.71 0.22 16 18 H -0.23 -0.69 7.11 99.48 0.71 0.01 16 19 C -0.08 -0.25 5.88 -19.87 -0.12 -0.37 16 20 C -0.13 0.06 9.20 71.23 0.66 0.72 16 21 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 22 H 0.07 -0.24 8.09 -2.39 -0.02 -0.25 16 23 H 0.08 -0.26 5.95 -2.39 -0.01 -0.27 16 24 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 25 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 26 H 0.14 0.34 7.35 -2.91 -0.02 0.32 16 27 H 0.10 0.04 4.15 -2.39 -0.01 0.03 16 28 H 0.07 0.03 7.96 -2.39 -0.02 0.01 16 29 H 0.08 -0.07 7.96 -2.39 -0.02 -0.09 16 30 H 0.07 0.00 7.10 -2.39 -0.02 -0.02 16 31 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 32 H 0.08 -0.17 7.96 -2.39 -0.02 -0.19 16 33 H 0.07 -0.04 7.96 -2.39 -0.02 -0.06 16 34 H 0.09 0.16 5.48 -2.39 -0.01 0.15 16 35 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 36 H 0.06 0.06 7.96 -2.38 -0.02 0.05 16 37 H 0.35 -0.74 8.23 -92.71 -0.76 -1.50 16 38 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.08 -0.23 5.95 -2.38 -0.01 -0.25 16 40 H 0.07 -0.07 6.03 -2.39 -0.01 -0.09 16 Total: 0.00 -6.15 319.29 7.91 1.75 By element: Atomic # 1 Polarization: -4.14 SS G_CDS: 1.02 Total: -3.13 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 4.91 Total: 3.70 kcal Atomic # 7 Polarization: -0.46 SS G_CDS: 0.27 Total: -0.19 kcal Atomic # 8 Polarization: -1.13 SS G_CDS: -1.03 Total: -2.16 kcal Atomic # 14 Polarization: 0.78 SS G_CDS: 2.74 Total: 3.52 kcal Total: -6.15 7.91 1.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203416371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.220 kcal (2) G-P(sol) polarization free energy of solvation -6.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 1.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds