Wall clock time and date at job start Mon Mar 30 2020 06:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00264 * 2 1 4 4 C 1.38234 * 120.00244 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99789 * 179.97438 * 4 3 2 6 6 C 1.38230 * 119.99864 * 359.95693 * 4 3 2 7 7 C 1.38235 * 120.00326 * 0.02562 * 6 4 3 8 8 C 1.50702 * 120.00236 * 179.70551 * 7 6 4 9 9 O 1.42907 * 109.46781 * 219.99930 * 8 7 6 10 10 Si 1.63106 * 113.99811 * 149.99783 * 9 8 7 11 11 C 1.86299 * 109.47075 * 59.99943 * 10 9 8 12 12 C 1.86296 * 109.46903 * 179.97438 * 10 9 8 13 13 C 1.86298 * 109.47125 * 300.00040 * 10 9 8 14 14 C 1.50701 * 109.47426 * 100.00072 * 8 7 6 15 15 N 1.27938 * 119.99592 * 235.00329 * 14 8 7 16 16 Si 1.86800 * 119.99975 * 54.99543 * 14 8 7 17 17 H 1.48499 * 109.46805 * 60.00431 * 16 14 8 18 18 H 1.48501 * 109.46910 * 180.02562 * 16 14 8 19 19 H 1.48496 * 109.47302 * 300.00503 * 16 14 8 20 20 C 1.38234 * 119.99814 * 359.97438 * 7 6 4 21 21 H 1.09000 * 109.46827 * 90.00288 * 1 2 3 22 22 H 1.09003 * 109.47455 * 209.99996 * 1 2 3 23 23 H 1.08989 * 109.47334 * 330.00586 * 1 2 3 24 24 H 1.07999 * 119.99747 * 359.97084 * 3 2 1 25 25 H 1.09001 * 109.47242 * 269.97350 * 5 4 3 26 26 H 1.08999 * 109.47144 * 29.97997 * 5 4 3 27 27 H 1.09000 * 109.47061 * 149.97941 * 5 4 3 28 28 H 1.08000 * 120.00356 * 179.97438 * 6 4 3 29 29 H 1.09001 * 109.46962 * 339.99504 * 8 7 6 30 30 H 1.09003 * 109.47094 * 59.99440 * 11 10 9 31 31 H 1.08994 * 109.46970 * 180.02562 * 11 10 9 32 32 H 1.09005 * 109.46932 * 299.99933 * 11 10 9 33 33 H 1.09005 * 109.46933 * 60.00673 * 12 10 9 34 34 H 1.09003 * 109.46611 * 179.97438 * 12 10 9 35 35 H 1.08994 * 109.47412 * 299.99971 * 12 10 9 36 36 H 1.09005 * 109.47349 * 59.99780 * 13 10 9 37 37 H 1.08994 * 109.47285 * 180.02562 * 13 10 9 38 38 H 1.09004 * 109.46989 * 300.00390 * 13 10 9 39 39 H 0.97003 * 119.99676 * 180.02562 * 15 14 8 40 40 H 1.08001 * 120.00279 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0020 7 6 3.5806 -1.1972 0.0023 8 6 4.3340 -2.5023 -0.0028 9 8 3.6751 -3.4293 -0.8681 10 14 4.6765 -4.5085 -1.5701 11 6 5.5388 -5.5039 -0.2525 12 6 3.6911 -5.6495 -2.6644 13 6 5.9434 -3.6051 -2.5947 14 6 4.3767 -3.0633 1.3952 15 7 5.5002 -3.3549 1.9334 16 14 2.7893 -3.3328 2.3423 17 1 1.9255 -4.2855 1.5997 18 1 3.1014 -3.8888 3.6835 19 1 2.0791 -2.0378 2.4969 20 6 2.1982 -1.1972 0.0018 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5137 24 1 1.6582 2.1324 -0.0005 25 1 4.5165 2.8160 -1.0279 26 1 3.7446 3.2623 0.5127 27 1 5.2861 2.3723 0.5146 28 1 5.3517 -0.0001 0.0020 29 1 5.3507 -2.3335 -0.3578 30 1 4.7976 -6.0324 0.3470 31 1 6.2084 -6.2248 -0.7216 32 1 6.1154 -4.8365 0.3881 33 1 3.1863 -5.0674 -3.4354 34 1 4.3604 -6.3705 -3.1339 35 1 2.9502 -6.1781 -2.0647 36 1 6.5199 -2.9376 -1.9541 37 1 6.6123 -4.3262 -3.0642 38 1 5.4388 -3.0226 -3.3656 39 1 5.5276 -3.7163 2.8332 40 1 1.6582 -2.1325 0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203417232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:14 Heat of formation + Delta-G solvation = -45.765756 kcal Electronic energy + Delta-G solvation = -18676.336010 eV Core-core repulsion = 15999.935876 eV Total energy + Delta-G solvation = -2676.400134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.84514 -38.65978 -35.85890 -34.39078 -33.31740 -29.50810 -28.82424 -28.35225 -28.32571 -27.58841 -27.39974 -22.76870 -21.69623 -20.72554 -18.50409 -17.43183 -16.97828 -16.30507 -16.21948 -15.92465 -14.91652 -14.64595 -14.48554 -14.26504 -14.06925 -14.03157 -13.80219 -13.74504 -13.47526 -13.40023 -13.27137 -13.19284 -13.06808 -12.96230 -12.80311 -12.53255 -12.39938 -12.22411 -12.03741 -11.74453 -11.64218 -11.34571 -10.69010 -10.44245 -9.99234 -9.49769 -9.37082 0.28036 0.50359 0.74688 1.05263 1.39370 1.45962 1.77696 1.89077 1.92008 2.07558 2.50343 2.79792 3.47608 3.80395 3.88075 3.93276 4.20529 4.29866 4.45351 4.49019 4.64697 4.66526 4.72933 4.73545 4.74210 4.74625 4.77421 4.78636 4.79077 4.82210 4.92628 4.94436 5.02563 5.14758 5.25073 5.36157 5.50812 5.59344 5.67120 5.69521 5.71948 5.78833 6.13861 6.70531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.113 4.113 4 C -0.084 4.084 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.085 4.085 8 C 0.195 3.805 9 O -0.611 6.611 10 Si 1.256 2.744 11 C -0.517 4.517 12 C -0.467 4.467 13 C -0.508 4.508 14 C -0.024 4.024 15 N -0.611 5.611 16 Si 0.917 3.083 17 H -0.224 1.224 18 H -0.252 1.252 19 H -0.224 1.224 20 C -0.098 4.098 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.123 0.877 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.343 0.657 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 1.041 0.165 1.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.085 4.085 3 C -0.132 4.132 4 C -0.084 4.084 5 C -0.172 4.172 6 C -0.128 4.128 7 C -0.086 4.086 8 C 0.137 3.863 9 O -0.568 6.568 10 Si 1.393 2.607 11 C -0.619 4.619 12 C -0.573 4.573 13 C -0.610 4.610 14 C -0.273 4.273 15 N -0.227 5.227 16 Si 0.732 3.268 17 H -0.146 1.146 18 H -0.176 1.176 19 H -0.146 1.146 20 C -0.116 4.116 21 H 0.091 0.909 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.141 0.859 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.142 0.858 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.161 0.839 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.010 1.069 0.339 1.509 hybrid contribution 0.269 -0.517 0.311 0.661 sum -0.741 0.552 0.650 1.130 Atomic orbital electron populations 1.20816 0.90945 1.02913 1.02638 1.19929 0.96255 0.92928 0.99414 1.20990 0.93532 0.97695 1.00935 1.19854 0.93810 0.95179 0.99512 1.20805 0.99954 0.93906 1.02553 1.20840 0.99839 0.91116 1.01015 1.19470 0.94021 0.92879 1.02213 1.19255 0.95185 0.85963 0.85906 1.85418 1.57107 1.52577 1.61714 0.77236 0.59111 0.60447 0.63903 1.27157 1.09115 1.10828 1.14834 1.26312 1.09547 1.10887 1.10567 1.26946 1.14023 1.09159 1.10831 1.30811 1.02678 0.93683 1.00167 1.68067 1.30311 1.07419 1.16858 0.85873 0.78153 0.83913 0.78815 1.14614 1.17594 1.14609 1.20846 0.93408 0.97966 0.99341 0.90856 0.91436 0.91431 0.85944 0.90982 0.91425 0.91415 0.85750 0.89205 0.91597 0.91104 0.89501 0.90742 0.90518 0.90816 0.91262 0.90805 0.90947 0.83915 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.06 10.01 36.01 0.36 0.42 16 2 C -0.09 -0.12 5.88 -104.62 -0.62 -0.73 16 3 C -0.11 -0.12 9.36 -39.58 -0.37 -0.50 16 4 C -0.08 -0.09 5.88 -104.63 -0.62 -0.70 16 5 C -0.12 0.10 10.01 36.00 0.36 0.46 16 6 C -0.11 -0.14 9.32 -39.59 -0.37 -0.50 16 7 C -0.08 -0.14 4.62 -104.62 -0.48 -0.62 16 8 C 0.19 0.19 2.12 -29.03 -0.06 0.13 16 9 O -0.61 -0.49 7.23 -35.23 -0.25 -0.74 16 10 Si 1.26 -0.77 12.68 -169.99 -2.16 -2.92 16 11 C -0.52 -0.17 8.04 101.05 0.81 0.64 16 12 C -0.47 0.17 8.65 101.05 0.87 1.04 16 13 C -0.51 0.03 8.56 101.05 0.87 0.90 16 14 C -0.02 -0.02 3.96 -13.90 -0.05 -0.08 16 15 N -0.61 -0.51 11.80 56.23 0.66 0.16 16 16 Si 0.92 0.73 26.06 -169.99 -4.43 -3.70 16 17 H -0.22 -0.18 7.11 56.52 0.40 0.22 16 18 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 19 H -0.22 -0.26 6.61 56.52 0.37 0.11 16 20 C -0.10 -0.18 6.81 -39.58 -0.27 -0.45 16 21 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 22 H 0.07 -0.07 8.09 -51.93 -0.42 -0.49 16 23 H 0.07 -0.09 8.08 -51.94 -0.42 -0.51 16 24 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 25 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 26 H 0.07 -0.10 8.09 -51.93 -0.42 -0.52 16 27 H 0.07 -0.09 8.09 -51.93 -0.42 -0.51 16 28 H 0.12 -0.03 8.04 -52.49 -0.42 -0.45 16 29 H 0.09 0.00 5.98 -51.93 -0.31 -0.31 16 30 H 0.06 0.03 7.96 -51.93 -0.41 -0.39 16 31 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 32 H 0.09 0.09 5.71 -51.93 -0.30 -0.20 16 33 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 34 H 0.08 -0.07 7.96 -51.93 -0.41 -0.49 16 35 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 36 H 0.07 0.00 7.10 -51.93 -0.37 -0.37 16 37 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 38 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 39 H 0.34 -0.21 8.23 -40.82 -0.34 -0.54 16 40 H 0.13 0.13 6.60 -52.49 -0.35 -0.22 16 LS Contribution 325.91 15.07 4.91 4.91 Total: 0.00 -2.81 325.91 -7.58 -10.39 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: -6.75 Total: -8.10 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.43 Total: 0.01 kcal Atomic # 7 Polarization: -0.51 SS G_CDS: 0.66 Total: 0.16 kcal Atomic # 8 Polarization: -0.49 SS G_CDS: -0.25 Total: -0.74 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: -6.59 Total: -6.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -2.81 -7.58 -10.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203417232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.374 kcal (2) G-P(sol) polarization free energy of solvation -2.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds