Wall clock time and date at job start Mon Mar 30 2020 06:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00264 * 2 1 4 4 C 1.38234 * 120.00244 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99789 * 179.97438 * 4 3 2 6 6 C 1.38230 * 119.99864 * 359.95693 * 4 3 2 7 7 C 1.38235 * 120.00326 * 0.02562 * 6 4 3 8 8 C 1.50702 * 120.00236 * 179.70551 * 7 6 4 9 9 O 1.42907 * 109.46781 * 219.99930 * 8 7 6 10 10 Si 1.63106 * 113.99811 * 149.99783 * 9 8 7 11 11 C 1.86299 * 109.47075 * 59.99943 * 10 9 8 12 12 C 1.86296 * 109.46903 * 179.97438 * 10 9 8 13 13 C 1.86298 * 109.47125 * 300.00040 * 10 9 8 14 14 C 1.50701 * 109.47426 * 100.00072 * 8 7 6 15 15 N 1.27938 * 119.99592 * 235.00329 * 14 8 7 16 16 Si 1.86800 * 119.99975 * 54.99543 * 14 8 7 17 17 H 1.48499 * 109.46805 * 60.00431 * 16 14 8 18 18 H 1.48501 * 109.46910 * 180.02562 * 16 14 8 19 19 H 1.48496 * 109.47302 * 300.00503 * 16 14 8 20 20 C 1.38234 * 119.99814 * 359.97438 * 7 6 4 21 21 H 1.09000 * 109.46827 * 90.00288 * 1 2 3 22 22 H 1.09003 * 109.47455 * 209.99996 * 1 2 3 23 23 H 1.08989 * 109.47334 * 330.00586 * 1 2 3 24 24 H 1.07999 * 119.99747 * 359.97084 * 3 2 1 25 25 H 1.09001 * 109.47242 * 269.97350 * 5 4 3 26 26 H 1.08999 * 109.47144 * 29.97997 * 5 4 3 27 27 H 1.09000 * 109.47061 * 149.97941 * 5 4 3 28 28 H 1.08000 * 120.00356 * 179.97438 * 6 4 3 29 29 H 1.09001 * 109.46962 * 339.99504 * 8 7 6 30 30 H 1.09003 * 109.47094 * 59.99440 * 11 10 9 31 31 H 1.08994 * 109.46970 * 180.02562 * 11 10 9 32 32 H 1.09005 * 109.46932 * 299.99933 * 11 10 9 33 33 H 1.09005 * 109.46933 * 60.00673 * 12 10 9 34 34 H 1.09003 * 109.46611 * 179.97438 * 12 10 9 35 35 H 1.08994 * 109.47412 * 299.99971 * 12 10 9 36 36 H 1.09005 * 109.47349 * 59.99780 * 13 10 9 37 37 H 1.08994 * 109.47285 * 180.02562 * 13 10 9 38 38 H 1.09004 * 109.46989 * 300.00390 * 13 10 9 39 39 H 0.97003 * 119.99676 * 180.02562 * 15 14 8 40 40 H 1.08001 * 120.00279 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0020 7 6 3.5806 -1.1972 0.0023 8 6 4.3340 -2.5023 -0.0028 9 8 3.6751 -3.4293 -0.8681 10 14 4.6765 -4.5085 -1.5701 11 6 5.5388 -5.5039 -0.2525 12 6 3.6911 -5.6495 -2.6644 13 6 5.9434 -3.6051 -2.5947 14 6 4.3767 -3.0633 1.3952 15 7 5.5002 -3.3549 1.9334 16 14 2.7893 -3.3328 2.3423 17 1 1.9255 -4.2855 1.5997 18 1 3.1014 -3.8888 3.6835 19 1 2.0791 -2.0378 2.4969 20 6 2.1982 -1.1972 0.0018 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5137 24 1 1.6582 2.1324 -0.0005 25 1 4.5165 2.8160 -1.0279 26 1 3.7446 3.2623 0.5127 27 1 5.2861 2.3723 0.5146 28 1 5.3517 -0.0001 0.0020 29 1 5.3507 -2.3335 -0.3578 30 1 4.7976 -6.0324 0.3470 31 1 6.2084 -6.2248 -0.7216 32 1 6.1154 -4.8365 0.3881 33 1 3.1863 -5.0674 -3.4354 34 1 4.3604 -6.3705 -3.1339 35 1 2.9502 -6.1781 -2.0647 36 1 6.5199 -2.9376 -1.9541 37 1 6.6123 -4.3262 -3.0642 38 1 5.4388 -3.0226 -3.3656 39 1 5.5276 -3.7163 2.8332 40 1 1.6582 -2.1325 0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203417232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:13 Heat of formation + Delta-G solvation = -33.194560 kcal Electronic energy + Delta-G solvation = -18675.790882 eV Core-core repulsion = 15999.935876 eV Total energy + Delta-G solvation = -2675.855006 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87457 -38.68944 -35.90783 -34.38370 -33.34162 -29.49479 -28.80712 -28.34794 -28.29812 -27.58476 -27.42454 -22.81393 -21.70874 -20.76592 -18.54280 -17.46724 -17.01777 -16.34895 -16.24570 -15.95043 -14.91312 -14.66433 -14.50801 -14.26010 -14.03226 -13.98586 -13.81420 -13.75477 -13.49718 -13.32293 -13.23838 -13.18414 -13.07418 -12.97763 -12.76070 -12.56654 -12.40068 -12.25205 -12.04378 -11.77435 -11.68682 -11.37991 -10.68220 -10.45876 -10.04136 -9.54509 -9.41367 0.22884 0.45073 0.69045 0.99004 1.32253 1.44978 1.72734 1.83198 1.94996 2.10099 2.51065 2.75236 3.45806 3.77165 3.87307 3.95230 4.18771 4.28986 4.48419 4.51229 4.63038 4.68188 4.73020 4.75777 4.77156 4.79095 4.80096 4.81872 4.82675 4.86776 4.90292 4.95518 5.08741 5.16242 5.26465 5.38535 5.52373 5.61101 5.63833 5.66772 5.69348 5.74528 6.11503 6.69107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.096 4.096 3 C -0.125 4.125 4 C -0.092 4.092 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.092 4.092 8 C 0.191 3.809 9 O -0.619 6.619 10 Si 1.285 2.715 11 C -0.525 4.525 12 C -0.474 4.474 13 C -0.514 4.514 14 C -0.024 4.024 15 N -0.616 5.616 16 Si 0.925 3.075 17 H -0.225 1.225 18 H -0.254 1.254 19 H -0.231 1.231 20 C -0.113 4.113 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.136 0.864 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.350 0.650 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 1.257 0.042 1.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.143 4.143 4 C -0.092 4.092 5 C -0.171 4.171 6 C -0.140 4.140 7 C -0.093 4.093 8 C 0.134 3.866 9 O -0.576 6.576 10 Si 1.421 2.579 11 C -0.626 4.626 12 C -0.580 4.580 13 C -0.616 4.616 14 C -0.274 4.274 15 N -0.233 5.233 16 Si 0.741 3.259 17 H -0.148 1.148 18 H -0.177 1.177 19 H -0.154 1.154 20 C -0.131 4.131 21 H 0.097 0.903 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.153 0.847 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.168 0.832 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.926 1.279 0.222 1.595 hybrid contribution 0.249 -0.583 0.352 0.726 sum -0.677 0.696 0.575 1.128 Atomic orbital electron populations 1.20855 0.89852 1.03473 1.03140 1.20203 0.97276 0.92964 0.99162 1.21230 0.93831 0.98210 1.00981 1.20137 0.94097 0.95909 0.99020 1.20832 1.00070 0.93145 1.03033 1.21051 1.00527 0.91180 1.01211 1.19608 0.94144 0.93325 1.02234 1.19313 0.95479 0.85842 0.86008 1.85411 1.57681 1.52768 1.61777 0.76730 0.58393 0.59677 0.63086 1.27258 1.09210 1.11007 1.15119 1.26382 1.09753 1.11180 1.10696 1.27022 1.14313 1.09318 1.10924 1.30800 1.02615 0.93719 1.00218 1.68051 1.30339 1.07462 1.17397 0.85752 0.78075 0.83398 0.78640 1.14781 1.17730 1.15381 1.20991 0.93726 0.98332 1.00071 0.90321 0.91154 0.90615 0.84657 0.90476 0.90771 0.90910 0.84701 0.88462 0.91753 0.90764 0.90164 0.90801 0.89843 0.90889 0.91366 0.90439 0.91152 0.83153 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.11 10.01 71.24 0.71 0.82 16 2 C -0.10 -0.30 5.88 -19.86 -0.12 -0.42 16 3 C -0.12 -0.29 9.36 22.27 0.21 -0.08 16 4 C -0.09 -0.20 5.88 -19.87 -0.12 -0.32 16 5 C -0.11 0.23 10.01 71.23 0.71 0.95 16 6 C -0.12 -0.34 9.32 22.27 0.21 -0.13 16 7 C -0.09 -0.35 4.62 -19.87 -0.09 -0.45 16 8 C 0.19 0.45 2.12 29.10 0.06 0.51 16 9 O -0.62 -1.23 7.23 -148.98 -1.08 -2.31 16 10 Si 1.29 -1.39 12.68 68.60 0.87 -0.52 16 11 C -0.52 -0.42 8.04 113.37 0.91 0.49 16 12 C -0.47 0.36 8.65 113.37 0.98 1.34 16 13 C -0.51 0.05 8.56 113.37 0.97 1.02 16 14 C -0.02 -0.05 3.96 88.68 0.35 0.30 16 15 N -0.62 -1.17 11.80 24.11 0.28 -0.89 16 16 Si 0.93 1.98 26.06 68.60 1.79 3.77 16 17 H -0.23 -0.50 7.11 99.48 0.71 0.21 16 18 H -0.25 -0.54 7.11 99.48 0.71 0.17 16 19 H -0.23 -0.75 6.61 99.48 0.66 -0.09 16 20 C -0.11 -0.49 6.81 22.27 0.15 -0.33 16 21 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 22 H 0.07 -0.12 8.09 -2.39 -0.02 -0.14 16 23 H 0.07 -0.21 8.08 -2.39 -0.02 -0.23 16 24 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 25 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.07 -0.25 8.09 -2.39 -0.02 -0.27 16 27 H 0.07 -0.22 8.09 -2.39 -0.02 -0.24 16 28 H 0.14 -0.04 8.04 -2.91 -0.02 -0.06 16 29 H 0.10 0.03 5.98 -2.39 -0.01 0.02 16 30 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 31 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 32 H 0.08 0.19 5.71 -2.38 -0.01 0.17 16 33 H 0.07 -0.04 7.96 -2.38 -0.02 -0.06 16 34 H 0.08 -0.18 7.96 -2.39 -0.02 -0.20 16 35 H 0.07 -0.04 7.96 -2.39 -0.02 -0.06 16 36 H 0.07 0.01 7.10 -2.38 -0.02 -0.01 16 37 H 0.08 -0.07 7.96 -2.39 -0.02 -0.09 16 38 H 0.07 0.03 7.96 -2.38 -0.02 0.01 16 39 H 0.35 -0.33 8.23 -92.71 -0.76 -1.09 16 40 H 0.13 0.39 6.60 -2.91 -0.02 0.37 16 Total: 0.00 -6.21 325.91 7.76 1.55 By element: Atomic # 1 Polarization: -3.14 SS G_CDS: 0.95 Total: -2.19 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 4.94 Total: 3.70 kcal Atomic # 7 Polarization: -1.17 SS G_CDS: 0.28 Total: -0.89 kcal Atomic # 8 Polarization: -1.23 SS G_CDS: -1.08 Total: -2.31 kcal Atomic # 14 Polarization: 0.59 SS G_CDS: 2.66 Total: 3.24 kcal Total: -6.21 7.76 1.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203417232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.745 kcal (2) G-P(sol) polarization free energy of solvation -6.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 1.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds