Wall clock time and date at job start Mon Mar 30 2020 06:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20829 * 119.99771 * 2 1 4 4 O 1.34225 * 119.99956 * 179.97438 * 2 1 3 5 5 C 1.45205 * 117.00148 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.46733 * 330.00683 * 5 4 2 7 7 C 1.50704 * 109.46912 * 89.99932 * 5 4 2 8 8 H 1.07997 * 120.00415 * 29.27719 * 7 5 4 9 9 C 1.37875 * 119.99750 * 209.27590 * 7 5 4 10 10 N 1.31514 * 120.00174 * 352.74733 * 9 7 5 11 11 Si 1.86795 * 120.00003 * 172.74990 * 9 7 5 12 12 H 1.48501 * 109.47227 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47324 * 299.99650 * 11 9 7 14 14 H 1.48506 * 109.47363 * 59.99985 * 11 9 7 15 15 C 1.52998 * 109.47376 * 210.00172 * 5 4 2 16 16 O 1.42906 * 109.46851 * 295.39501 * 15 5 4 17 17 C 1.42900 * 113.99551 * 180.02562 * 16 15 5 18 18 C 1.50705 * 109.46776 * 179.97438 * 17 16 15 19 19 C 1.38239 * 119.99856 * 269.72668 * 18 17 16 20 20 C 1.38235 * 119.99830 * 179.76732 * 19 18 17 21 21 C 1.38234 * 119.99999 * 0.50413 * 20 19 18 22 22 C 1.38236 * 119.99994 * 359.74793 * 21 20 19 23 23 C 1.38234 * 120.00110 * 89.99813 * 18 17 16 24 24 H 1.08997 * 109.46837 * 240.00427 * 1 2 3 25 25 H 1.08996 * 109.47055 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46898 * 120.00644 * 1 2 3 27 27 H 0.96997 * 120.00105 * 354.56378 * 10 9 7 28 28 H 1.08994 * 109.47058 * 55.38772 * 15 5 4 29 29 H 1.08994 * 109.46947 * 175.39682 * 15 5 4 30 30 H 1.08999 * 109.47214 * 299.99366 * 17 16 15 31 31 H 1.08997 * 109.47350 * 59.99861 * 17 16 15 32 32 H 1.07996 * 119.99886 * 359.97438 * 19 18 17 33 33 H 1.07998 * 119.99954 * 180.23017 * 20 19 18 34 34 H 1.08004 * 120.00581 * 179.72613 * 21 20 19 35 35 H 1.08007 * 120.00384 * 179.97438 * 22 21 20 36 36 H 1.08003 * 120.00149 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6282 -1.0865 0.0011 6 1 3.9446 -0.1787 -0.5128 7 6 4.1293 -1.0599 1.4221 8 1 3.5646 -1.5472 2.2031 9 6 5.3087 -0.4133 1.7252 10 7 6.0682 0.0561 0.7596 11 14 5.8279 -0.2041 3.5073 12 1 7.1241 0.5184 3.5637 13 1 4.7945 0.5747 4.2359 14 1 5.9783 -1.5396 4.1392 15 6 4.2032 -2.3074 -0.7197 16 8 3.8784 -3.4902 0.0137 17 6 4.3720 -4.6941 -0.5770 18 6 3.9740 -5.8716 0.2753 19 6 4.8092 -6.3056 1.2878 20 6 4.4419 -7.3826 2.0727 21 6 3.2444 -8.0321 1.8384 22 6 2.4117 -7.6013 0.8226 23 6 2.7765 -6.5211 0.0410 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 5.8400 -0.1206 -0.1664 28 1 3.7772 -2.3723 -1.7208 29 1 5.2864 -2.2103 -0.7912 30 1 3.9499 -4.8087 -1.5753 31 1 5.4588 -4.6463 -0.6452 32 1 5.7470 -5.8012 1.4677 33 1 5.0927 -7.7194 2.8661 34 1 2.9594 -8.8764 2.4487 35 1 1.4761 -8.1090 0.6392 36 1 2.1258 -6.1845 -0.7525 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000210899616.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:04 Heat of formation + Delta-G solvation = -115.169381 kcal Electronic energy + Delta-G solvation = -19660.042115 eV Core-core repulsion = 16495.248611 eV Total energy + Delta-G solvation = -3164.793504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.33568 -39.10124 -37.07387 -35.37016 -33.24862 -31.70241 -30.75783 -29.96550 -28.40165 -25.59624 -24.52657 -22.42851 -21.66150 -21.08285 -19.97153 -17.34138 -16.82012 -16.67252 -15.71012 -15.46812 -15.36187 -15.05059 -14.79112 -14.15355 -13.75209 -13.50935 -13.26777 -13.04267 -12.56142 -12.49346 -12.28821 -11.98777 -11.87560 -11.43807 -11.07011 -10.86819 -10.77539 -10.61275 -10.27574 -10.16338 -10.01386 -9.53681 -8.92927 -8.77079 -8.66445 -8.55220 -8.32361 -6.46889 -4.18684 1.44112 1.54907 3.15069 3.43538 3.46565 3.64651 3.81549 3.82781 4.49880 4.60800 4.97879 5.06147 5.16823 5.25508 5.31288 5.41870 5.49079 5.61462 5.66699 5.69999 5.77007 5.81070 5.98599 6.09283 6.12014 6.18922 6.25696 6.57599 6.61370 6.69352 6.79693 6.82191 7.12766 7.61045 7.82423 8.04229 8.39040 8.71081 8.82197 9.51838 10.90089 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.006320 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.341232 B = 4429.577326 C = 5521.439106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.450 3.550 3 O -0.518 6.518 4 O -0.358 6.358 5 C 0.199 3.801 6 H 0.064 0.936 7 C -0.592 4.592 8 H 0.061 0.939 9 C 0.028 3.972 10 N -0.902 5.902 11 Si 1.070 2.930 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.079 3.921 16 O -0.349 6.349 17 C 0.095 3.905 18 C -0.076 4.076 19 C -0.096 4.096 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.100 4.100 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.266 0.734 28 H 0.023 0.977 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 -12.793 -2.209 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.293 3.707 3 O -0.408 6.408 4 O -0.274 6.274 5 C 0.147 3.853 6 H 0.081 0.919 7 C -0.629 4.629 8 H 0.079 0.921 9 C -0.176 4.176 10 N -0.538 5.538 11 Si 0.897 3.103 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.212 1.212 15 C 0.002 3.998 16 O -0.267 6.267 17 C 0.018 3.982 18 C -0.076 4.076 19 C -0.114 4.114 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.119 4.119 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.323 -11.817 -1.075 13.005 hybrid contribution -0.952 -0.647 -1.216 1.675 sum -6.275 -12.464 -2.291 14.141 Atomic orbital electron populations 1.21562 0.89402 1.04565 1.04698 1.23395 0.91444 0.82821 0.73076 1.90639 1.71019 1.33400 1.45713 1.86423 1.25343 1.33438 1.82245 1.20719 0.72835 0.93104 0.98690 0.91853 1.21938 1.10011 1.38390 0.92602 0.92099 1.25880 0.93111 0.92258 1.06389 1.70839 1.38850 1.43352 1.00740 0.83540 0.76325 0.76579 0.73824 1.20616 1.21257 1.21153 1.22803 0.98719 0.85865 0.92378 1.88169 1.76802 1.12312 1.49463 1.21253 0.97897 0.84766 0.94311 1.19710 0.95019 0.95714 0.97144 1.21138 0.99991 0.96023 0.94285 1.21119 0.97075 0.96464 0.99627 1.21113 0.94854 1.00059 0.98042 1.21082 0.99623 0.97451 0.96355 1.21054 0.95608 0.95457 0.99736 0.88997 0.89164 0.89347 0.92358 0.95920 0.92263 0.93521 0.93100 0.85795 0.86145 0.86390 0.86262 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 10.43 36.01 0.38 -1.75 16 2 C 0.45 9.96 8.03 36.01 0.29 10.25 16 3 O -0.52 -13.53 16.30 -18.75 -0.31 -13.83 16 4 O -0.36 -8.72 9.83 -42.11 -0.41 -9.13 16 5 C 0.20 5.27 1.99 -27.88 -0.06 5.22 16 6 H 0.06 1.82 5.98 -51.93 -0.31 1.51 16 7 C -0.59 -17.22 8.19 -34.44 -0.28 -17.50 16 8 H 0.06 1.84 7.82 -52.49 -0.41 1.43 16 9 C 0.03 0.82 5.45 -17.82 -0.10 0.73 16 10 N -0.90 -27.17 13.55 55.43 0.75 -26.42 16 11 Si 1.07 25.99 29.91 -169.99 -5.08 20.91 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.08 1.82 5.74 37.16 0.21 2.03 16 16 O -0.35 -7.86 9.78 -39.20 -0.38 -8.24 16 17 C 0.09 1.65 6.06 36.01 0.22 1.87 16 18 C -0.08 -1.23 5.51 -104.62 -0.58 -1.81 16 19 C -0.10 -1.48 9.70 -39.58 -0.38 -1.87 16 20 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 21 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 22 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 23 C -0.10 -1.45 9.70 -39.58 -0.38 -1.83 16 24 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.09 1.18 8.12 -51.93 -0.42 0.76 16 26 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.27 7.87 6.38 -40.82 -0.26 7.60 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 1.38 7.66 -51.93 -0.40 0.98 16 30 H 0.05 0.72 8.09 -51.93 -0.42 0.30 16 31 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -34.72 318.48 -7.33 -42.06 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.82 Total: 0.46 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.88 Total: -10.59 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.75 Total: -26.42 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.10 Total: -31.21 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.08 Total: 20.91 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.72 -7.33 -42.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000210899616.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.114 kcal (2) G-P(sol) polarization free energy of solvation -34.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds