Wall clock time and date at job start Mon Mar 30 2020 06:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20829 * 119.99771 * 2 1 4 4 O 1.34225 * 119.99956 * 179.97438 * 2 1 3 5 5 C 1.45205 * 117.00148 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.46733 * 330.00683 * 5 4 2 7 7 C 1.50704 * 109.46912 * 89.99932 * 5 4 2 8 8 H 1.07997 * 120.00415 * 29.27719 * 7 5 4 9 9 C 1.37875 * 119.99750 * 209.27590 * 7 5 4 10 10 N 1.31514 * 120.00174 * 352.74733 * 9 7 5 11 11 Si 1.86795 * 120.00003 * 172.74990 * 9 7 5 12 12 H 1.48501 * 109.47227 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47324 * 299.99650 * 11 9 7 14 14 H 1.48506 * 109.47363 * 59.99985 * 11 9 7 15 15 C 1.52998 * 109.47376 * 210.00172 * 5 4 2 16 16 O 1.42906 * 109.46851 * 295.39501 * 15 5 4 17 17 C 1.42900 * 113.99551 * 180.02562 * 16 15 5 18 18 C 1.50705 * 109.46776 * 179.97438 * 17 16 15 19 19 C 1.38239 * 119.99856 * 269.72668 * 18 17 16 20 20 C 1.38235 * 119.99830 * 179.76732 * 19 18 17 21 21 C 1.38234 * 119.99999 * 0.50413 * 20 19 18 22 22 C 1.38236 * 119.99994 * 359.74793 * 21 20 19 23 23 C 1.38234 * 120.00110 * 89.99813 * 18 17 16 24 24 H 1.08997 * 109.46837 * 240.00427 * 1 2 3 25 25 H 1.08996 * 109.47055 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46898 * 120.00644 * 1 2 3 27 27 H 0.96997 * 120.00105 * 354.56378 * 10 9 7 28 28 H 1.08994 * 109.47058 * 55.38772 * 15 5 4 29 29 H 1.08994 * 109.46947 * 175.39682 * 15 5 4 30 30 H 1.08999 * 109.47214 * 299.99366 * 17 16 15 31 31 H 1.08997 * 109.47350 * 59.99861 * 17 16 15 32 32 H 1.07996 * 119.99886 * 359.97438 * 19 18 17 33 33 H 1.07998 * 119.99954 * 180.23017 * 20 19 18 34 34 H 1.08004 * 120.00581 * 179.72613 * 21 20 19 35 35 H 1.08007 * 120.00384 * 179.97438 * 22 21 20 36 36 H 1.08003 * 120.00149 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6282 -1.0865 0.0011 6 1 3.9446 -0.1787 -0.5128 7 6 4.1293 -1.0599 1.4221 8 1 3.5646 -1.5472 2.2031 9 6 5.3087 -0.4133 1.7252 10 7 6.0682 0.0561 0.7596 11 14 5.8279 -0.2041 3.5073 12 1 7.1241 0.5184 3.5637 13 1 4.7945 0.5747 4.2359 14 1 5.9783 -1.5396 4.1392 15 6 4.2032 -2.3074 -0.7197 16 8 3.8784 -3.4902 0.0137 17 6 4.3720 -4.6941 -0.5770 18 6 3.9740 -5.8716 0.2753 19 6 4.8092 -6.3056 1.2878 20 6 4.4419 -7.3826 2.0727 21 6 3.2444 -8.0321 1.8384 22 6 2.4117 -7.6013 0.8226 23 6 2.7765 -6.5211 0.0410 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 5.8400 -0.1206 -0.1664 28 1 3.7772 -2.3723 -1.7208 29 1 5.2864 -2.2103 -0.7912 30 1 3.9499 -4.8087 -1.5753 31 1 5.4588 -4.6463 -0.6452 32 1 5.7470 -5.8012 1.4677 33 1 5.0927 -7.7194 2.8661 34 1 2.9594 -8.8764 2.4487 35 1 1.4761 -8.1090 0.6392 36 1 2.1258 -6.1845 -0.7525 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000210899616.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:03 Heat of formation + Delta-G solvation = -136.364725 kcal Electronic energy + Delta-G solvation = -19660.961214 eV Core-core repulsion = 16495.248611 eV Total energy + Delta-G solvation = -3165.712603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.18597 -40.24743 -38.72067 -37.24521 -35.36164 -32.98906 -31.78808 -31.50595 -30.08143 -27.14241 -26.45130 -23.54723 -23.46601 -22.20472 -21.85788 -19.43643 -18.59644 -17.83157 -17.43079 -16.99015 -16.89270 -16.69357 -16.14887 -15.69609 -15.51740 -15.00192 -14.88473 -14.31081 -14.14969 -13.72597 -13.63087 -13.41605 -13.21515 -13.08259 -12.75925 -12.64365 -12.26761 -12.21911 -11.97047 -11.91116 -11.80701 -11.37203 -10.75061 -10.65288 -10.40301 -9.81588 -9.74204 -8.77888 -6.49703 0.35613 0.50566 1.39397 1.46023 1.53568 1.73940 2.11850 2.48408 2.64131 3.04931 3.20205 3.84613 3.89829 3.94161 4.14824 4.18395 4.26952 4.30220 4.35505 4.42913 4.48187 4.56902 4.59459 4.67312 4.76251 4.82248 4.98466 5.07249 5.16070 5.55213 5.59778 5.68424 5.70740 5.77905 6.10732 6.12063 6.31058 6.43632 6.95422 7.29165 8.60409 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.006320 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.341232 B = 4429.577326 C = 5521.439106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.438 3.562 3 O -0.567 6.567 4 O -0.363 6.363 5 C 0.197 3.803 6 H 0.032 0.968 7 C -0.604 4.604 8 H 0.044 0.956 9 C -0.019 4.019 10 N -0.923 5.923 11 Si 1.111 2.889 12 H -0.275 1.275 13 H -0.277 1.277 14 H -0.266 1.266 15 C 0.091 3.909 16 O -0.375 6.375 17 C 0.092 3.908 18 C -0.105 4.105 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.112 4.112 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.123 0.877 27 H 0.257 0.743 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 -14.816 -1.403 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.284 3.716 3 O -0.459 6.459 4 O -0.279 6.279 5 C 0.143 3.857 6 H 0.050 0.950 7 C -0.641 4.641 8 H 0.062 0.938 9 C -0.218 4.218 10 N -0.560 5.560 11 Si 0.931 3.069 12 H -0.200 1.200 13 H -0.203 1.203 14 H -0.191 1.191 15 C 0.014 3.986 16 O -0.295 6.295 17 C 0.016 3.984 18 C -0.105 4.105 19 C -0.139 4.139 20 C -0.147 4.147 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.130 4.130 24 H 0.131 0.869 25 H 0.127 0.873 26 H 0.141 0.859 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.132 0.868 33 H 0.161 0.839 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.237 -13.867 -0.288 15.645 hybrid contribution -0.463 -0.097 -1.497 1.570 sum -7.700 -13.965 -1.785 16.047 Atomic orbital electron populations 1.21711 0.82931 1.06744 1.07268 1.25011 0.94224 0.81380 0.71025 1.90617 1.72625 1.34745 1.47947 1.86432 1.24089 1.34854 1.82527 1.20532 0.74201 0.93484 0.97450 0.94997 1.22104 1.10073 1.38336 0.93602 0.93794 1.27241 0.93243 0.91702 1.09594 1.70929 1.39563 1.44769 1.00692 0.83043 0.76401 0.77675 0.69739 1.20014 1.20277 1.19082 1.22465 0.97688 0.85322 0.93112 1.88100 1.77312 1.13413 1.50638 1.21460 0.97983 0.83390 0.95610 1.19759 0.96584 0.95982 0.98180 1.21262 1.00013 0.97410 0.95191 1.21435 0.98036 0.95649 0.99610 1.21566 0.93893 1.00350 0.97773 1.21489 1.00736 0.96564 0.95555 1.21276 0.95039 0.96132 1.00542 0.86872 0.87294 0.85884 0.93308 0.93231 0.93639 0.91413 0.93207 0.86777 0.83934 0.82957 0.83119 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 10.43 71.24 0.74 -2.70 16 2 C 0.44 19.31 8.03 71.24 0.57 19.88 16 3 O -0.57 -30.34 16.30 21.96 0.36 -29.98 16 4 O -0.36 -17.83 9.83 -48.62 -0.48 -18.31 16 5 C 0.20 10.77 1.99 29.85 0.06 10.83 16 6 H 0.03 1.94 5.98 -2.39 -0.01 1.93 16 7 C -0.60 -36.20 8.19 25.60 0.21 -35.99 16 8 H 0.04 2.72 7.82 -2.91 -0.02 2.70 16 9 C -0.02 -1.11 5.45 84.65 0.46 -0.65 16 10 N -0.92 -57.41 13.55 21.45 0.29 -57.12 16 11 Si 1.11 52.80 29.91 68.60 2.05 54.85 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 15 C 0.09 4.30 5.74 71.98 0.41 4.71 16 16 O -0.38 -17.22 9.78 -145.19 -1.42 -18.64 16 17 C 0.09 3.24 6.06 71.24 0.43 3.67 16 18 C -0.10 -3.39 5.51 -19.86 -0.11 -3.50 16 19 C -0.12 -3.70 9.70 22.27 0.22 -3.49 16 20 C -0.13 -3.17 10.05 22.27 0.22 -2.95 16 21 C -0.12 -2.48 10.05 22.27 0.22 -2.25 16 22 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 23 C -0.11 -3.04 9.70 22.27 0.22 -2.83 16 24 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.11 2.52 8.12 -2.39 -0.02 2.50 16 26 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.26 15.96 6.38 -92.71 -0.59 15.37 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 2.23 7.66 -2.39 -0.02 2.21 16 30 H 0.07 2.05 8.09 -2.39 -0.02 2.03 16 31 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 32 H 0.11 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -78.66 318.48 5.93 -72.74 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.24 Total: 14.26 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 3.88 Total: -17.80 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.29 Total: -57.12 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -1.54 Total: -66.93 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 2.05 Total: 54.85 kcal Total: -78.66 5.93 -72.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000210899616.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.628 kcal (2) G-P(sol) polarization free energy of solvation -78.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds