Wall clock time and date at job start Mon Mar 30 2020 06:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38233 * 119.99860 * 2 1 4 4 C 1.38232 * 119.99947 * 179.72194 * 3 2 1 5 5 C 1.38236 * 119.99903 * 0.27799 * 4 3 2 6 6 C 1.38236 * 120.00061 * 359.95098 * 5 4 3 7 7 C 1.50692 * 119.99821 * 180.02562 * 6 5 4 8 8 C 1.38233 * 119.99846 * 180.18461 * 2 1 3 9 9 C 1.50697 * 120.00165 * 0.02562 * 8 2 1 10 10 O 1.42897 * 109.47215 * 313.23540 * 9 8 2 11 11 Si 1.63093 * 114.00564 * 264.67950 * 10 9 8 12 12 C 1.86306 * 109.47276 * 65.05276 * 11 10 9 13 13 C 1.86301 * 109.47417 * 185.05489 * 11 10 9 14 14 C 1.86302 * 109.47064 * 305.05453 * 11 10 9 15 15 C 1.50699 * 109.47210 * 73.24027 * 9 8 2 16 16 N 1.27939 * 119.99733 * 347.86721 * 15 9 8 17 17 Si 1.86802 * 119.99884 * 167.86406 * 15 9 8 18 18 H 1.48501 * 109.47049 * 4.94809 * 17 15 9 19 19 H 1.48503 * 109.46608 * 124.94345 * 17 15 9 20 20 H 1.48500 * 109.47273 * 244.94352 * 17 15 9 21 21 H 1.08999 * 109.46739 * 96.36374 * 1 2 3 22 22 H 1.08999 * 109.46861 * 216.36169 * 1 2 3 23 23 H 1.08999 * 109.46883 * 336.36149 * 1 2 3 24 24 H 1.08007 * 120.00072 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.00070 * 180.24988 * 4 3 2 26 26 H 1.07998 * 119.99803 * 179.97438 * 5 4 3 27 27 H 1.09007 * 109.47260 * 90.00535 * 7 6 5 28 28 H 1.09002 * 109.47226 * 210.00206 * 7 6 5 29 29 H 1.08999 * 109.47756 * 329.99999 * 7 6 5 30 30 H 1.09009 * 109.46945 * 193.24310 * 9 8 2 31 31 H 1.09007 * 109.46805 * 60.00098 * 12 11 10 32 32 H 1.08995 * 109.47330 * 180.02562 * 12 11 10 33 33 H 1.08996 * 109.46686 * 300.00731 * 12 11 10 34 34 H 1.08998 * 109.46929 * 59.99475 * 13 11 10 35 35 H 1.08995 * 109.47301 * 179.97438 * 13 11 10 36 36 H 1.09007 * 109.47039 * 300.00132 * 13 11 10 37 37 H 1.08998 * 109.47088 * 65.45279 * 14 11 10 38 38 H 1.09001 * 109.47324 * 185.45120 * 14 11 10 39 39 H 1.08994 * 109.46901 * 305.44746 * 14 11 10 40 40 H 0.96996 * 120.00276 * 0.02562 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0058 5 6 4.2717 0.0000 0.0058 6 6 3.5806 -1.1971 0.0010 7 6 4.3341 -2.5021 0.0016 8 6 2.1982 -1.1971 -0.0039 9 6 1.4448 -2.5022 -0.0086 10 8 0.4070 -2.4567 0.9726 11 14 0.8229 -3.1079 2.4089 12 6 2.1813 -2.0931 3.1809 13 6 -0.6595 -3.1218 3.5372 14 6 1.4221 -4.8527 2.1494 15 6 0.8393 -2.7277 -1.3701 16 7 0.8098 -1.7745 -2.2229 17 14 0.1320 -4.3991 -1.8125 18 1 0.1790 -5.2870 -0.6232 19 1 -1.2764 -4.2390 -2.2554 20 1 0.9310 -4.9998 -2.9107 21 1 -0.3633 -0.1139 -1.0213 22 1 -0.3633 -0.8276 0.6093 23 1 -0.3633 0.9414 0.4121 24 1 1.6582 2.1325 -0.0004 25 1 4.1205 2.1325 0.0099 26 1 5.3517 0.0001 0.0099 27 1 4.5118 -2.8187 1.0295 28 1 3.7471 -3.2609 -0.5159 29 1 5.2885 -2.3710 -0.5083 30 1 2.1294 -3.3179 0.2243 31 1 1.8307 -1.0722 3.3327 32 1 2.4596 -2.5286 4.1405 33 1 3.0486 -2.0850 2.5207 34 1 -1.4543 -3.7154 3.0855 35 1 -0.3817 -3.5574 4.4969 36 1 -1.0102 -2.1009 3.6890 37 1 2.3450 -4.8375 1.5696 38 1 1.6082 -5.3206 3.1162 39 1 0.6638 -5.4209 1.6109 40 1 1.1774 -0.9067 -1.9933 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215885012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:17 Heat of formation + Delta-G solvation = -40.800750 kcal Electronic energy + Delta-G solvation = -19581.441449 eV Core-core repulsion = 16905.256614 eV Total energy + Delta-G solvation = -2676.184835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.54278 -38.35733 -35.83646 -34.65858 -32.72545 -29.61219 -29.32531 -28.54879 -28.39997 -27.63255 -26.81757 -23.10970 -21.71141 -20.93740 -18.41854 -17.78822 -17.47867 -16.27038 -16.04010 -15.67785 -14.96899 -14.84176 -14.38702 -14.23958 -14.16131 -13.97182 -13.89572 -13.67221 -13.46724 -13.41695 -13.31576 -13.12803 -13.10362 -12.96474 -12.77021 -12.60308 -12.54373 -12.15177 -12.00183 -11.92772 -11.41700 -11.21624 -10.77588 -10.46670 -10.03836 -9.65867 -9.48439 0.22344 0.39175 0.76891 1.24421 1.48808 1.59488 1.80688 1.92276 1.98129 1.99898 2.45191 2.71522 3.60758 3.74233 3.82701 3.89669 3.97647 4.06072 4.30561 4.44638 4.53829 4.55830 4.62537 4.66810 4.68796 4.70969 4.71805 4.75631 4.77612 4.85216 4.88646 4.95682 5.04415 5.06081 5.17983 5.42617 5.50106 5.51021 5.55116 5.58597 5.61798 5.73745 6.03972 6.92643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C -0.131 4.131 4 C -0.101 4.101 5 C -0.129 4.129 6 C -0.064 4.064 7 C -0.131 4.131 8 C -0.134 4.134 9 C 0.133 3.867 10 O -0.600 6.600 11 Si 1.239 2.761 12 C -0.503 4.503 13 C -0.465 4.465 14 C -0.512 4.512 15 C -0.029 4.029 16 N -0.609 5.609 17 Si 1.057 2.943 18 H -0.242 1.242 19 H -0.242 1.242 20 H -0.247 1.247 21 H 0.068 0.932 22 H 0.116 0.884 23 H 0.061 0.939 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -1.716 1.612 2.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.052 4.052 3 C -0.149 4.149 4 C -0.119 4.119 5 C -0.147 4.147 6 C -0.064 4.064 7 C -0.187 4.187 8 C -0.135 4.135 9 C 0.074 3.926 10 O -0.558 6.558 11 Si 1.377 2.623 12 C -0.605 4.605 13 C -0.571 4.571 14 C -0.614 4.614 15 C -0.275 4.275 16 N -0.227 5.227 17 Si 0.869 3.131 18 H -0.165 1.165 19 H -0.165 1.165 20 H -0.171 1.171 21 H 0.087 0.913 22 H 0.134 0.866 23 H 0.080 0.920 24 H 0.142 0.858 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.294 -2.228 0.268 2.263 hybrid contribution 1.220 1.232 1.524 2.308 sum 1.514 -0.996 1.791 2.548 Atomic orbital electron populations 1.21476 0.90552 1.04828 1.03580 1.19817 0.96662 0.91989 0.96767 1.21139 0.94302 0.97673 1.01788 1.21227 0.94363 0.98168 0.98134 1.21021 0.99945 0.91803 1.01940 1.19728 0.92613 0.95762 0.98287 1.21017 1.00467 0.94222 1.03015 1.19819 0.93075 0.94938 1.05661 1.20694 0.87464 0.94607 0.89806 1.85480 1.47645 1.83816 1.38852 0.77504 0.65081 0.63072 0.56666 1.26978 1.15153 1.10440 1.07962 1.26281 1.15263 1.05082 1.10513 1.27021 1.06715 1.22348 1.05339 1.31867 0.96095 1.08409 0.91167 1.69297 1.12108 1.05244 1.36023 0.83725 0.80385 0.68635 0.80314 1.16511 1.16451 1.17071 0.91306 0.86646 0.91998 0.85791 0.85797 0.85773 0.90379 0.91089 0.90684 0.89444 0.91163 0.91149 0.91283 0.90624 0.90503 0.90778 0.91294 0.90474 0.90425 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.18 8.71 36.01 0.31 0.14 16 2 C -0.05 -0.08 4.39 -104.62 -0.46 -0.54 16 3 C -0.13 -0.17 9.68 -39.59 -0.38 -0.55 16 4 C -0.10 -0.09 10.05 -39.58 -0.40 -0.48 16 5 C -0.13 -0.10 9.70 -39.58 -0.38 -0.48 16 6 C -0.06 -0.05 5.17 -104.63 -0.54 -0.59 16 7 C -0.13 0.18 9.18 36.00 0.33 0.51 16 8 C -0.13 -0.16 3.25 -104.63 -0.34 -0.50 16 9 C 0.13 0.04 1.11 -29.04 -0.03 0.01 16 10 O -0.60 0.04 4.83 -35.23 -0.17 -0.13 16 11 Si 1.24 -1.90 12.75 -169.99 -2.17 -4.07 16 12 C -0.50 0.15 8.37 101.05 0.85 1.00 16 13 C -0.46 0.51 8.65 101.05 0.87 1.38 16 14 C -0.51 0.82 8.43 101.05 0.85 1.67 16 15 C -0.03 -0.03 4.92 -13.90 -0.07 -0.10 16 16 N -0.61 -1.64 12.20 56.22 0.69 -0.96 16 17 Si 1.06 -0.29 29.93 -169.99 -5.09 -5.38 16 18 H -0.24 0.41 6.69 56.52 0.38 0.79 16 19 H -0.24 -0.15 7.11 56.52 0.40 0.25 16 20 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 21 H 0.07 0.12 6.55 -51.93 -0.34 -0.22 16 22 H 0.12 0.12 4.85 -51.93 -0.25 -0.13 16 23 H 0.06 0.03 8.04 -51.93 -0.42 -0.39 16 24 H 0.12 0.00 8.06 -52.48 -0.42 -0.43 16 25 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 26 H 0.12 -0.10 8.06 -52.49 -0.42 -0.53 16 27 H 0.08 -0.18 7.46 -51.92 -0.39 -0.56 16 28 H 0.07 -0.15 6.35 -51.93 -0.33 -0.48 16 29 H 0.07 -0.15 8.09 -51.93 -0.42 -0.57 16 30 H 0.09 -0.15 3.54 -51.92 -0.18 -0.33 16 31 H 0.07 0.05 7.96 -51.93 -0.41 -0.36 16 32 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 33 H 0.07 0.00 6.16 -51.93 -0.32 -0.32 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 35 H 0.08 -0.12 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 37 H 0.07 -0.15 7.10 -51.93 -0.37 -0.52 16 38 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 39 H 0.08 -0.11 7.55 -51.93 -0.39 -0.51 16 40 H 0.33 0.90 4.88 -40.82 -0.20 0.71 16 LS Contribution 314.74 15.07 4.74 4.74 Total: 0.00 -3.05 314.74 -7.56 -10.61 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -6.18 Total: -6.28 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 0.61 Total: 1.45 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: 0.69 Total: -0.96 kcal Atomic # 8 Polarization: 0.04 SS G_CDS: -0.17 Total: -0.13 kcal Atomic # 14 Polarization: -2.19 SS G_CDS: -7.25 Total: -9.45 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -3.05 -7.56 -10.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215885012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.192 kcal (2) G-P(sol) polarization free energy of solvation -3.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds