Wall clock time and date at job start Mon Mar 30 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38233 * 119.99860 * 2 1 4 4 C 1.38232 * 119.99947 * 179.72194 * 3 2 1 5 5 C 1.38236 * 119.99903 * 0.27799 * 4 3 2 6 6 C 1.38236 * 120.00061 * 359.95098 * 5 4 3 7 7 C 1.50692 * 119.99821 * 180.02562 * 6 5 4 8 8 C 1.38233 * 119.99846 * 180.18461 * 2 1 3 9 9 C 1.50697 * 120.00165 * 0.02562 * 8 2 1 10 10 O 1.42897 * 109.47215 * 313.23540 * 9 8 2 11 11 Si 1.63093 * 114.00564 * 264.67950 * 10 9 8 12 12 C 1.86306 * 109.47276 * 65.05276 * 11 10 9 13 13 C 1.86301 * 109.47417 * 185.05489 * 11 10 9 14 14 C 1.86302 * 109.47064 * 305.05453 * 11 10 9 15 15 C 1.50699 * 109.47210 * 73.24027 * 9 8 2 16 16 N 1.27939 * 119.99733 * 347.86721 * 15 9 8 17 17 Si 1.86802 * 119.99884 * 167.86406 * 15 9 8 18 18 H 1.48501 * 109.47049 * 4.94809 * 17 15 9 19 19 H 1.48503 * 109.46608 * 124.94345 * 17 15 9 20 20 H 1.48500 * 109.47273 * 244.94352 * 17 15 9 21 21 H 1.08999 * 109.46739 * 96.36374 * 1 2 3 22 22 H 1.08999 * 109.46861 * 216.36169 * 1 2 3 23 23 H 1.08999 * 109.46883 * 336.36149 * 1 2 3 24 24 H 1.08007 * 120.00072 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.00070 * 180.24988 * 4 3 2 26 26 H 1.07998 * 119.99803 * 179.97438 * 5 4 3 27 27 H 1.09007 * 109.47260 * 90.00535 * 7 6 5 28 28 H 1.09002 * 109.47226 * 210.00206 * 7 6 5 29 29 H 1.08999 * 109.47756 * 329.99999 * 7 6 5 30 30 H 1.09009 * 109.46945 * 193.24310 * 9 8 2 31 31 H 1.09007 * 109.46805 * 60.00098 * 12 11 10 32 32 H 1.08995 * 109.47330 * 180.02562 * 12 11 10 33 33 H 1.08996 * 109.46686 * 300.00731 * 12 11 10 34 34 H 1.08998 * 109.46929 * 59.99475 * 13 11 10 35 35 H 1.08995 * 109.47301 * 179.97438 * 13 11 10 36 36 H 1.09007 * 109.47039 * 300.00132 * 13 11 10 37 37 H 1.08998 * 109.47088 * 65.45279 * 14 11 10 38 38 H 1.09001 * 109.47324 * 185.45120 * 14 11 10 39 39 H 1.08994 * 109.46901 * 305.44746 * 14 11 10 40 40 H 0.96996 * 120.00276 * 0.02562 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0058 5 6 4.2717 0.0000 0.0058 6 6 3.5806 -1.1971 0.0010 7 6 4.3341 -2.5021 0.0016 8 6 2.1982 -1.1971 -0.0039 9 6 1.4448 -2.5022 -0.0086 10 8 0.4070 -2.4567 0.9726 11 14 0.8229 -3.1079 2.4089 12 6 2.1813 -2.0931 3.1809 13 6 -0.6595 -3.1218 3.5372 14 6 1.4221 -4.8527 2.1494 15 6 0.8393 -2.7277 -1.3701 16 7 0.8098 -1.7745 -2.2229 17 14 0.1320 -4.3991 -1.8125 18 1 0.1790 -5.2870 -0.6232 19 1 -1.2764 -4.2390 -2.2554 20 1 0.9310 -4.9998 -2.9107 21 1 -0.3633 -0.1139 -1.0213 22 1 -0.3633 -0.8276 0.6093 23 1 -0.3633 0.9414 0.4121 24 1 1.6582 2.1325 -0.0004 25 1 4.1205 2.1325 0.0099 26 1 5.3517 0.0001 0.0099 27 1 4.5118 -2.8187 1.0295 28 1 3.7471 -3.2609 -0.5159 29 1 5.2885 -2.3710 -0.5083 30 1 2.1294 -3.3179 0.2243 31 1 1.8307 -1.0722 3.3327 32 1 2.4596 -2.5286 4.1405 33 1 3.0486 -2.0850 2.5207 34 1 -1.4543 -3.7154 3.0855 35 1 -0.3817 -3.5574 4.4969 36 1 -1.0102 -2.1009 3.6890 37 1 2.3450 -4.8375 1.5696 38 1 1.6082 -5.3206 3.1162 39 1 0.6638 -5.4209 1.6109 40 1 1.1774 -0.9067 -1.9933 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215885012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:16 Heat of formation + Delta-G solvation = -27.607837 kcal Electronic energy + Delta-G solvation = -19580.869362 eV Core-core repulsion = 16905.256614 eV Total energy + Delta-G solvation = -2675.612748 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.55047 -38.35377 -35.88294 -34.65177 -32.75211 -29.50390 -29.30632 -28.43434 -28.33667 -27.60149 -26.84586 -23.14592 -21.72605 -20.96875 -18.38393 -17.82859 -17.47778 -16.26774 -16.03531 -15.66199 -14.95775 -14.80370 -14.34412 -14.17136 -14.07286 -13.93529 -13.89347 -13.62617 -13.42147 -13.33831 -13.23266 -13.07707 -13.01085 -12.93468 -12.77545 -12.59092 -12.54330 -12.08632 -11.98601 -11.86204 -11.47817 -11.18083 -10.69909 -10.41181 -10.07567 -9.68763 -9.51908 0.19784 0.35262 0.74151 1.24081 1.56221 1.64949 1.92152 1.95219 2.03018 2.10710 2.53225 2.68744 3.61608 3.76651 3.81323 3.94355 3.96763 4.06185 4.35994 4.43845 4.57175 4.66989 4.70140 4.76172 4.77894 4.79083 4.79852 4.82131 4.83289 4.86938 4.87212 4.93906 5.01682 5.11700 5.22118 5.45953 5.51023 5.53528 5.58805 5.62423 5.67285 5.70744 6.02437 6.83621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.146 4.146 4 C -0.110 4.110 5 C -0.141 4.141 6 C -0.071 4.071 7 C -0.136 4.136 8 C -0.142 4.142 9 C 0.129 3.871 10 O -0.609 6.609 11 Si 1.269 2.731 12 C -0.512 4.512 13 C -0.476 4.476 14 C -0.517 4.517 15 C -0.030 4.030 16 N -0.635 5.635 17 Si 1.069 2.931 18 H -0.213 1.213 19 H -0.259 1.259 20 H -0.251 1.251 21 H 0.060 0.940 22 H 0.116 0.884 23 H 0.064 0.936 24 H 0.130 0.870 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 -2.945 2.050 3.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 C -0.164 4.164 4 C -0.128 4.128 5 C -0.158 4.158 6 C -0.071 4.071 7 C -0.192 4.192 8 C -0.142 4.142 9 C 0.070 3.930 10 O -0.567 6.567 11 Si 1.405 2.595 12 C -0.612 4.612 13 C -0.581 4.581 14 C -0.620 4.620 15 C -0.275 4.275 16 N -0.252 5.252 17 Si 0.880 3.120 18 H -0.134 1.134 19 H -0.183 1.183 20 H -0.175 1.175 21 H 0.079 0.921 22 H 0.134 0.866 23 H 0.083 0.917 24 H 0.148 0.852 25 H 0.155 0.845 26 H 0.156 0.844 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.875 -3.440 0.732 3.624 hybrid contribution 1.037 1.652 1.398 2.400 sum 1.912 -1.787 2.130 3.374 Atomic orbital electron populations 1.21452 0.90690 1.05035 1.03066 1.19941 0.96783 0.92513 0.97288 1.21324 0.94816 0.97995 1.02305 1.21460 0.94354 0.99008 0.98004 1.21297 1.00815 0.91879 1.01849 1.20022 0.92666 0.96752 0.97669 1.21126 1.00719 0.93363 1.03986 1.19974 0.93481 0.95168 1.05581 1.20802 0.87749 0.94925 0.89557 1.85457 1.47780 1.84167 1.39259 0.77002 0.63974 0.62949 0.55568 1.27123 1.15797 1.09943 1.08382 1.26399 1.15785 1.04807 1.11150 1.27019 1.07320 1.21661 1.05973 1.32333 0.95061 1.08677 0.91393 1.69350 1.13420 1.05533 1.36940 0.83651 0.78971 0.68101 0.81248 1.13435 1.18278 1.17493 0.92129 0.86602 0.91693 0.85207 0.84499 0.84384 0.89254 0.90168 0.89944 0.87307 0.92626 0.90758 0.91481 0.90397 0.89953 0.91417 0.90295 0.89944 0.90095 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 8.71 71.24 0.62 0.07 16 2 C -0.07 -0.29 4.39 -19.86 -0.09 -0.37 16 3 C -0.15 -0.56 9.68 22.27 0.22 -0.34 16 4 C -0.11 -0.27 10.05 22.27 0.22 -0.04 16 5 C -0.14 -0.24 9.70 22.27 0.22 -0.03 16 6 C -0.07 -0.10 5.17 -19.87 -0.10 -0.20 16 7 C -0.14 0.50 9.18 71.23 0.65 1.15 16 8 C -0.14 -0.39 3.25 -19.87 -0.06 -0.46 16 9 C 0.13 0.05 1.11 29.10 0.03 0.08 16 10 O -0.61 0.15 4.83 -148.98 -0.72 -0.57 16 11 Si 1.27 -4.58 12.75 68.60 0.87 -3.70 16 12 C -0.51 0.28 8.37 113.37 0.95 1.23 16 13 C -0.48 1.10 8.65 113.37 0.98 2.08 16 14 C -0.52 2.61 8.43 113.37 0.96 3.56 16 15 C -0.03 -0.07 4.92 88.68 0.44 0.36 16 16 N -0.64 -4.08 12.20 24.11 0.29 -3.78 16 17 Si 1.07 -1.17 29.93 68.60 2.05 0.88 16 18 H -0.21 1.22 6.69 99.48 0.67 1.88 16 19 H -0.26 -0.45 7.11 99.48 0.71 0.26 16 20 H -0.25 0.10 7.11 99.48 0.71 0.81 16 21 H 0.06 0.32 6.55 -2.39 -0.02 0.30 16 22 H 0.12 0.38 4.85 -2.39 -0.01 0.37 16 23 H 0.06 0.15 8.04 -2.39 -0.02 0.13 16 24 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 25 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 26 H 0.14 -0.27 8.06 -2.91 -0.02 -0.29 16 27 H 0.09 -0.53 7.46 -2.38 -0.02 -0.54 16 28 H 0.08 -0.46 6.35 -2.39 -0.02 -0.47 16 29 H 0.08 -0.42 8.09 -2.39 -0.02 -0.43 16 30 H 0.11 -0.50 3.54 -2.38 -0.01 -0.51 16 31 H 0.05 0.13 7.96 -2.38 -0.02 0.11 16 32 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 33 H 0.07 -0.01 6.16 -2.39 -0.01 -0.03 16 34 H 0.08 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 36 H 0.07 -0.07 7.96 -2.38 -0.02 -0.09 16 37 H 0.08 -0.54 7.10 -2.39 -0.02 -0.56 16 38 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 39 H 0.08 -0.42 7.55 -2.39 -0.02 -0.44 16 40 H 0.33 2.27 4.88 -92.71 -0.45 1.82 16 Total: 0.00 -7.79 314.74 8.82 1.03 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: 1.29 Total: 1.12 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.03 Total: 7.08 kcal Atomic # 7 Polarization: -4.08 SS G_CDS: 0.29 Total: -3.78 kcal Atomic # 8 Polarization: 0.15 SS G_CDS: -0.72 Total: -0.57 kcal Atomic # 14 Polarization: -5.75 SS G_CDS: 2.93 Total: -2.82 kcal Total: -7.79 8.82 1.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215885012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.638 kcal (2) G-P(sol) polarization free energy of solvation -7.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 1.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds