Wall clock time and date at job start Mon Mar 30 2020 06:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47273 * 2 1 4 4 C 1.52997 * 109.47273 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46951 * 55.00419 * 4 3 2 6 6 O 1.42902 * 109.46993 * 295.00290 * 4 3 2 7 7 C 1.35675 * 116.99559 * 156.29298 * 6 4 3 8 8 C 1.39309 * 119.82066 * 5.24025 * 7 6 4 9 9 C 1.36440 * 120.18574 * 179.97438 * 8 7 6 10 10 C 1.40826 * 119.81018 * 0.02562 * 9 8 7 11 11 C 1.41220 * 120.18108 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99372 * 333.83311 * 11 10 9 13 13 C 1.39880 * 120.00349 * 153.83027 * 11 10 9 14 14 N 1.30889 * 120.00272 * 346.91374 * 13 11 10 15 15 Si 1.86801 * 120.00070 * 166.91403 * 13 11 10 16 16 H 1.48492 * 109.47305 * 90.00232 * 15 13 11 17 17 H 1.48504 * 109.46868 * 210.00471 * 15 13 11 18 18 H 1.48501 * 109.46908 * 329.99783 * 15 13 11 19 19 C 1.40832 * 119.64491 * 0.24806 * 10 9 8 20 20 C 1.36437 * 119.80959 * 359.46667 * 19 10 9 21 21 C 1.50704 * 109.47009 * 175.00161 * 4 3 2 22 22 O 1.20829 * 119.99611 * 120.00409 * 21 4 3 23 23 O 1.34222 * 119.99988 * 300.00163 * 21 4 3 24 24 H 1.09000 * 109.47391 * 59.99398 * 1 2 3 25 25 H 1.08999 * 109.47256 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46995 * 299.99608 * 1 2 3 27 27 H 1.09003 * 109.46995 * 240.00392 * 2 1 3 28 28 H 1.08994 * 109.47121 * 120.00292 * 2 1 3 29 29 H 1.09003 * 109.46790 * 60.00266 * 3 2 1 30 30 H 1.09001 * 109.46894 * 300.00728 * 3 2 1 31 31 H 1.08003 * 119.90798 * 0.02562 * 8 7 6 32 32 H 1.07997 * 120.09290 * 179.97438 * 9 8 7 33 33 H 0.96993 * 120.00112 * 179.97438 * 14 13 11 34 34 H 1.08007 * 120.09767 * 179.72874 * 19 10 9 35 35 H 1.07997 * 119.90904 * 180.27774 * 20 19 10 36 36 H 0.96697 * 117.00101 * 180.02562 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8530 -0.8410 6 8 4.0458 0.8732 1.2220 7 6 5.2947 0.3432 1.2090 8 6 6.0888 0.4691 0.0714 9 6 7.3461 -0.0606 0.0504 10 6 7.8400 -0.7364 1.1828 11 6 9.1399 -1.2881 1.1695 12 1 9.5936 -1.5785 0.2334 13 6 9.8399 -1.4584 2.3685 14 7 9.4125 -0.8824 3.4634 15 14 11.3847 -2.5079 2.4073 16 1 12.5686 -1.6568 2.1259 17 1 11.5284 -3.1279 3.7490 18 1 11.2851 -3.5735 1.3778 19 6 7.0286 -0.8642 2.3268 20 6 5.7758 -0.3238 2.3335 21 6 4.0724 2.8579 -0.1232 22 8 4.7667 3.3306 0.7454 23 8 3.7485 3.5934 -1.1982 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 5.7086 0.9881 -0.7961 32 1 7.9603 0.0375 -0.8325 33 1 9.8976 -1.0008 4.2949 34 1 7.3984 -1.3849 3.1978 35 1 5.1539 -0.4169 3.2115 36 1 4.0946 4.4956 -1.2333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216251596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:47 Heat of formation + Delta-G solvation = -123.570339 kcal Electronic energy + Delta-G solvation = -19703.746474 eV Core-core repulsion = 16538.588677 eV Total energy + Delta-G solvation = -3165.157797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44871 -38.60779 -36.72845 -35.86525 -34.78946 -33.25761 -30.46640 -29.42152 -28.90418 -25.16751 -24.88094 -22.03439 -21.45410 -20.75687 -20.07447 -18.03309 -17.44323 -17.25329 -16.65739 -15.51992 -15.21148 -14.92474 -14.63062 -13.96703 -13.75245 -13.46105 -13.09799 -12.73073 -12.44133 -12.38941 -12.20725 -11.82252 -11.63999 -11.42569 -11.24358 -11.19546 -11.01931 -10.86310 -10.77711 -10.63040 -10.36388 -9.86463 -9.83564 -9.35982 -9.06505 -7.65227 -7.02901 -6.68875 -4.27713 2.36487 2.73980 2.94289 3.01961 3.09056 3.13404 3.23826 3.93398 3.96734 4.64169 4.71109 4.87788 5.06165 5.21495 5.40907 5.50531 5.58496 5.66328 5.79317 5.81540 5.97787 6.02292 6.16968 6.20734 6.35182 6.59635 6.67873 6.95902 7.09321 7.17670 7.42017 7.54320 7.75292 7.99538 8.03025 8.20498 8.37884 8.62882 8.90402 8.96578 10.25327 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.004577 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.831629 B = 6116.401860 C = 6571.115802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.106 4.106 4 C 0.105 3.895 5 H 0.104 0.896 6 O -0.290 6.290 7 C -0.009 4.009 8 C -0.164 4.164 9 C -0.194 4.194 10 C 0.089 3.911 11 C -0.462 4.462 12 H 0.076 0.924 13 C 0.073 3.927 14 N -0.803 5.803 15 Si 0.910 3.090 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.262 1.262 19 C -0.130 4.130 20 C -0.114 4.114 21 C 0.447 3.553 22 O -0.486 6.486 23 O -0.521 6.521 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.280 0.720 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.969 2.692 -6.405 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.144 4.144 4 C 0.045 3.955 5 H 0.122 0.878 6 O -0.205 6.205 7 C -0.052 4.052 8 C -0.183 4.183 9 C -0.214 4.214 10 C 0.087 3.913 11 C -0.492 4.492 12 H 0.094 0.906 13 C -0.144 4.144 14 N -0.429 5.429 15 Si 0.735 3.265 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.150 4.150 20 C -0.133 4.133 21 C 0.287 3.713 22 O -0.371 6.371 23 O -0.334 6.334 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.148 0.852 35 H 0.117 0.883 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -11.969 2.447 -5.706 13.483 hybrid contribution 1.260 0.480 -0.142 1.356 sum -10.709 2.927 -5.848 12.548 Atomic orbital electron populations 1.21756 0.95687 1.01686 1.01622 1.21500 0.95667 0.95619 1.03368 1.21655 0.89932 0.99115 1.03651 1.21652 0.95813 0.86919 0.91076 0.87818 1.86015 1.30958 1.72177 1.31318 1.18583 0.84445 1.05476 0.96662 1.20290 0.96597 1.05290 0.96142 1.20556 0.95682 1.05054 1.00108 1.17605 0.92952 0.89823 0.90899 1.19468 0.99341 1.36694 0.93699 0.90590 1.25881 0.99245 0.94146 0.95086 1.69810 1.38225 1.34103 1.00770 0.86287 0.81179 0.80567 0.78505 1.19609 1.20142 1.18577 1.21059 0.91389 1.02074 1.00443 1.19817 0.96890 1.01360 0.95249 1.24610 0.77936 0.89884 0.78916 1.90777 1.34064 1.71907 1.40340 1.84529 1.72647 1.30741 1.45508 0.92881 0.92609 0.92730 0.91696 0.90537 0.90602 0.89365 0.89547 0.88681 0.90933 0.85230 0.88310 0.73650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.40 5.83 -26.73 -0.16 -1.55 16 3 C -0.11 -1.28 4.88 -26.73 -0.13 -1.41 16 4 C 0.11 1.68 2.16 -27.88 -0.06 1.62 16 5 H 0.10 1.59 6.36 -51.93 -0.33 1.26 16 6 O -0.29 -5.91 8.94 -38.68 -0.35 -6.26 16 7 C -0.01 -0.21 6.35 -38.78 -0.25 -0.46 16 8 C -0.16 -3.82 8.61 -39.83 -0.34 -4.16 16 9 C -0.19 -4.88 9.74 -39.25 -0.38 -5.26 16 10 C 0.09 2.42 5.57 -106.81 -0.59 1.83 16 11 C -0.46 -12.38 9.05 -37.84 -0.34 -12.72 16 12 H 0.08 1.95 7.88 -52.49 -0.41 1.53 16 13 C 0.07 1.85 5.22 -17.34 -0.09 1.76 16 14 N -0.80 -21.12 10.80 55.54 0.60 -20.52 16 15 Si 0.91 18.87 29.58 -169.99 -5.03 13.84 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 19 C -0.13 -3.44 8.62 -39.25 -0.34 -3.78 16 20 C -0.11 -2.81 9.92 -39.83 -0.40 -3.20 16 21 C 0.45 7.43 6.68 36.01 0.24 7.67 16 22 O -0.49 -10.27 17.01 -25.48 -0.43 -10.70 16 23 O -0.52 -6.34 13.23 -39.24 -0.52 -6.86 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.00 7.82 -51.93 -0.41 0.59 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 0.88 8.00 -51.93 -0.42 0.46 16 31 H 0.09 1.77 5.63 -52.48 -0.30 1.47 16 32 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 34 H 0.13 3.49 6.12 -52.48 -0.32 3.17 16 35 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 36 H 0.41 3.26 9.10 45.56 0.41 3.67 16 LS Contribution 309.46 15.07 4.66 4.66 Total: -1.00 -31.38 309.46 -7.39 -38.78 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.86 Total: 7.71 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.47 Total: -20.66 kcal Atomic # 7 Polarization: -21.12 SS G_CDS: 0.60 Total: -20.52 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -1.30 Total: -23.82 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.38 -7.39 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216251596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.794 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds