Wall clock time and date at job start Mon Mar 30 2020 06:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47273 * 2 1 4 4 C 1.52997 * 109.47273 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46951 * 55.00419 * 4 3 2 6 6 O 1.42902 * 109.46993 * 295.00290 * 4 3 2 7 7 C 1.35675 * 116.99559 * 156.29298 * 6 4 3 8 8 C 1.39309 * 119.82066 * 5.24025 * 7 6 4 9 9 C 1.36440 * 120.18574 * 179.97438 * 8 7 6 10 10 C 1.40826 * 119.81018 * 0.02562 * 9 8 7 11 11 C 1.41220 * 120.18108 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99372 * 333.83311 * 11 10 9 13 13 C 1.39880 * 120.00349 * 153.83027 * 11 10 9 14 14 N 1.30889 * 120.00272 * 346.91374 * 13 11 10 15 15 Si 1.86801 * 120.00070 * 166.91403 * 13 11 10 16 16 H 1.48492 * 109.47305 * 90.00232 * 15 13 11 17 17 H 1.48504 * 109.46868 * 210.00471 * 15 13 11 18 18 H 1.48501 * 109.46908 * 329.99783 * 15 13 11 19 19 C 1.40832 * 119.64491 * 0.24806 * 10 9 8 20 20 C 1.36437 * 119.80959 * 359.46667 * 19 10 9 21 21 C 1.50704 * 109.47009 * 175.00161 * 4 3 2 22 22 O 1.20829 * 119.99611 * 120.00409 * 21 4 3 23 23 O 1.34222 * 119.99988 * 300.00163 * 21 4 3 24 24 H 1.09000 * 109.47391 * 59.99398 * 1 2 3 25 25 H 1.08999 * 109.47256 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46995 * 299.99608 * 1 2 3 27 27 H 1.09003 * 109.46995 * 240.00392 * 2 1 3 28 28 H 1.08994 * 109.47121 * 120.00292 * 2 1 3 29 29 H 1.09003 * 109.46790 * 60.00266 * 3 2 1 30 30 H 1.09001 * 109.46894 * 300.00728 * 3 2 1 31 31 H 1.08003 * 119.90798 * 0.02562 * 8 7 6 32 32 H 1.07997 * 120.09290 * 179.97438 * 9 8 7 33 33 H 0.96993 * 120.00112 * 179.97438 * 14 13 11 34 34 H 1.08007 * 120.09767 * 179.72874 * 19 10 9 35 35 H 1.07997 * 119.90904 * 180.27774 * 20 19 10 36 36 H 0.96697 * 117.00101 * 180.02562 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8530 -0.8410 6 8 4.0458 0.8732 1.2220 7 6 5.2947 0.3432 1.2090 8 6 6.0888 0.4691 0.0714 9 6 7.3461 -0.0606 0.0504 10 6 7.8400 -0.7364 1.1828 11 6 9.1399 -1.2881 1.1695 12 1 9.5936 -1.5785 0.2334 13 6 9.8399 -1.4584 2.3685 14 7 9.4125 -0.8824 3.4634 15 14 11.3847 -2.5079 2.4073 16 1 12.5686 -1.6568 2.1259 17 1 11.5284 -3.1279 3.7490 18 1 11.2851 -3.5735 1.3778 19 6 7.0286 -0.8642 2.3268 20 6 5.7758 -0.3238 2.3335 21 6 4.0724 2.8579 -0.1232 22 8 4.7667 3.3306 0.7454 23 8 3.7485 3.5934 -1.1982 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 5.7086 0.9881 -0.7961 32 1 7.9603 0.0375 -0.8325 33 1 9.8976 -1.0008 4.2949 34 1 7.3984 -1.3849 3.1978 35 1 5.1539 -0.4169 3.2115 36 1 4.0946 4.4956 -1.2333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216251596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:46 Heat of formation + Delta-G solvation = -142.025424 kcal Electronic energy + Delta-G solvation = -19704.546746 eV Core-core repulsion = 16538.588677 eV Total energy + Delta-G solvation = -3165.958069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.83956 -40.20594 -38.41702 -37.12158 -35.97944 -35.05958 -31.99722 -31.13307 -30.61788 -26.79664 -26.20491 -23.64983 -22.78946 -22.27135 -21.56552 -19.42075 -19.20767 -18.89279 -17.96650 -17.11293 -16.74476 -16.32063 -15.86624 -15.73274 -15.11108 -14.85768 -14.59265 -14.11327 -14.03283 -13.98555 -13.68534 -13.26228 -12.93044 -12.78787 -12.74566 -12.65106 -12.48771 -12.29452 -12.04050 -12.00156 -11.70687 -11.52592 -11.30707 -11.21376 -10.91151 -9.60227 -8.94871 -8.58189 -6.27312 0.90825 0.96905 1.07946 1.39740 1.49138 1.55041 1.83969 2.23004 2.48072 2.73405 3.63469 3.65940 3.78412 4.09898 4.17121 4.21353 4.30074 4.38975 4.64477 4.70976 4.84971 4.88376 5.00763 5.02329 5.16127 5.24638 5.28901 5.35855 5.47645 5.50834 5.55245 5.61768 5.81693 6.02750 6.22538 6.49228 6.69914 6.91533 6.93570 7.03358 8.38376 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.004577 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.831629 B = 6116.401860 C = 6571.115802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.097 4.097 4 C 0.092 3.908 5 H 0.116 0.884 6 O -0.300 6.300 7 C 0.003 3.997 8 C -0.165 4.165 9 C -0.206 4.206 10 C 0.056 3.944 11 C -0.497 4.497 12 H 0.078 0.922 13 C 0.030 3.970 14 N -0.837 5.837 15 Si 0.986 3.014 16 H -0.265 1.265 17 H -0.267 1.267 18 H -0.257 1.257 19 C -0.148 4.148 20 C -0.130 4.130 21 C 0.456 3.544 22 O -0.539 6.539 23 O -0.500 6.500 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.287 0.713 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.997 3.007 -7.932 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.135 4.135 4 C 0.034 3.966 5 H 0.133 0.867 6 O -0.214 6.214 7 C -0.040 4.040 8 C -0.184 4.184 9 C -0.225 4.225 10 C 0.054 3.946 11 C -0.527 4.527 12 H 0.096 0.904 13 C -0.183 4.183 14 N -0.464 5.464 15 Si 0.807 3.193 16 H -0.189 1.189 17 H -0.191 1.191 18 H -0.181 1.181 19 C -0.167 4.167 20 C -0.148 4.148 21 C 0.298 3.702 22 O -0.428 6.428 23 O -0.314 6.314 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -13.039 2.791 -7.274 15.189 hybrid contribution 1.382 0.522 0.224 1.494 sum -11.656 3.312 -7.050 14.019 Atomic orbital electron populations 1.21726 0.93747 1.02378 1.02493 1.21502 0.97353 0.94875 1.02487 1.21739 0.86712 0.99975 1.05030 1.22154 0.98231 0.86642 0.89595 0.86679 1.86002 1.29194 1.72178 1.34071 1.18639 0.85521 1.03859 0.95988 1.20541 0.95901 1.04782 0.97137 1.20795 0.96712 1.05012 1.00029 1.17959 0.93700 0.91047 0.91877 1.19742 0.99923 1.38449 0.94619 0.90435 1.26775 1.02520 0.94779 0.94192 1.69879 1.39908 1.35131 1.01518 0.85143 0.76684 0.78613 0.78863 1.18939 1.19145 1.18054 1.20997 0.92327 1.03198 1.00211 1.20011 0.96659 1.01681 0.96492 1.24582 0.76659 0.90145 0.78830 1.90776 1.36581 1.73076 1.42401 1.84461 1.71817 1.32085 1.43033 0.91191 0.92099 0.92666 0.91088 0.93008 0.90773 0.86269 0.86638 0.87592 0.90258 0.86664 0.87058 0.71095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.12 -2.54 5.83 30.59 0.18 -2.36 16 3 C -0.10 -2.07 4.88 30.59 0.15 -1.92 16 4 C 0.09 2.76 2.16 29.85 0.06 2.83 16 5 H 0.12 3.21 6.36 -2.39 -0.02 3.19 16 6 O -0.30 -12.00 8.94 -70.85 -0.63 -12.63 16 7 C 0.00 0.16 6.35 22.79 0.14 0.30 16 8 C -0.17 -7.56 8.61 22.11 0.19 -7.37 16 9 C -0.21 -10.43 9.74 22.48 0.22 -10.21 16 10 C 0.06 3.14 5.57 -21.28 -0.12 3.02 16 11 C -0.50 -27.38 9.05 23.40 0.21 -27.17 16 12 H 0.08 4.07 7.88 -2.91 -0.02 4.04 16 13 C 0.03 1.57 5.22 85.23 0.45 2.01 16 14 N -0.84 -45.25 10.80 21.82 0.24 -45.01 16 15 Si 0.99 38.95 29.58 68.60 2.03 40.98 16 16 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 17 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 19 C -0.15 -8.12 8.62 22.48 0.19 -7.92 16 20 C -0.13 -6.52 9.92 22.11 0.22 -6.30 16 21 C 0.46 14.16 6.68 71.24 0.48 14.63 16 22 O -0.54 -22.31 17.01 28.39 0.48 -21.83 16 23 O -0.50 -10.39 13.23 -51.34 -0.68 -11.07 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.31 7.82 -2.39 -0.02 1.29 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.12 1.84 8.00 -2.39 -0.02 1.83 16 31 H 0.12 4.50 5.63 -2.91 -0.02 4.49 16 32 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 33 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 34 H 0.12 6.54 6.12 -2.91 -0.02 6.52 16 35 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 36 H 0.43 5.38 9.10 -74.06 -0.67 4.71 16 Total: -1.00 -69.48 309.46 4.95 -64.53 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.42 Total: 27.02 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 3.09 Total: -41.99 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.24 Total: -45.01 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -0.83 Total: -45.53 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -69.48 4.95 -64.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216251596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.491 kcal (2) G-P(sol) polarization free energy of solvation -69.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds