Wall clock time and date at job start Mon Mar 30 2020 06:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47140 * 2 1 4 4 C 1.53000 * 109.46853 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47378 * 305.00273 * 4 3 2 6 6 O 1.42897 * 109.47078 * 65.00448 * 4 3 2 7 7 C 1.35671 * 116.99939 * 205.46251 * 6 4 3 8 8 C 1.39312 * 119.81997 * 354.54689 * 7 6 4 9 9 C 1.36438 * 120.18584 * 180.02562 * 8 7 6 10 10 C 1.40833 * 119.81076 * 0.27622 * 9 8 7 11 11 C 1.41215 * 120.17311 * 179.72082 * 10 9 8 12 12 H 1.07999 * 120.00016 * 27.77192 * 11 10 9 13 13 C 1.39893 * 119.99768 * 207.76157 * 11 10 9 14 14 N 1.30879 * 119.99988 * 12.57843 * 13 11 10 15 15 Si 1.86799 * 120.00131 * 192.57937 * 13 11 10 16 16 H 1.48499 * 109.47142 * 59.99927 * 15 13 11 17 17 H 1.48493 * 109.47220 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46659 * 300.00090 * 15 13 11 19 19 C 1.40836 * 119.64357 * 359.43139 * 10 9 8 20 20 C 1.36435 * 119.80825 * 0.56800 * 19 10 9 21 21 C 1.50707 * 109.46887 * 184.99825 * 4 3 2 22 22 O 1.20826 * 120.00148 * 245.00222 * 21 4 3 23 23 O 1.34231 * 119.99471 * 65.00661 * 21 4 3 24 24 H 1.09001 * 109.47484 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46746 * 300.00070 * 1 2 3 26 26 H 1.09000 * 109.47014 * 59.99244 * 1 2 3 27 27 H 1.09003 * 109.46746 * 239.99930 * 2 1 3 28 28 H 1.08998 * 109.46696 * 120.00318 * 2 1 3 29 29 H 1.09003 * 109.47358 * 60.00305 * 3 2 1 30 30 H 1.08993 * 109.47190 * 299.99989 * 3 2 1 31 31 H 1.08003 * 119.90559 * 359.97438 * 8 7 6 32 32 H 1.08005 * 120.09131 * 180.02562 * 9 8 7 33 33 H 0.97000 * 120.00381 * 179.97438 * 14 13 11 34 34 H 1.07994 * 120.09224 * 180.29424 * 19 10 9 35 35 H 1.08000 * 119.91055 * 179.70201 * 20 19 10 36 36 H 0.96702 * 116.99748 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8530 0.8426 6 8 4.0468 0.8729 -1.2201 7 6 5.2811 0.3102 -1.1965 8 6 6.0651 0.4076 -0.0490 9 6 7.3076 -0.1551 -0.0173 10 6 7.7994 -0.8308 -1.1508 11 6 9.0867 -1.4109 -1.1284 12 1 9.5127 -1.7438 -0.1935 13 6 9.8099 -1.5547 -2.3172 14 7 9.4139 -0.9397 -3.4025 15 14 11.3407 -2.6244 -2.3557 16 1 10.9814 -4.0165 -1.9839 17 1 11.9201 -2.6106 -3.7229 18 1 12.3381 -2.0961 -1.3906 19 6 6.9980 -0.9302 -2.3047 20 6 5.7577 -0.3619 -2.3200 21 6 4.0724 2.8579 0.1244 22 8 4.6910 3.3610 -0.7833 23 8 3.8325 3.5596 1.2433 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 5.6885 0.9308 0.8175 32 1 7.9140 -0.0789 0.8733 33 1 9.9155 -1.0390 -4.2268 34 1 7.3660 -1.4508 -3.1763 35 1 5.1437 -0.4330 -3.2056 36 1 4.1748 4.4634 1.2765 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216251636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:49 Heat of formation + Delta-G solvation = -123.899430 kcal Electronic energy + Delta-G solvation = -19693.111447 eV Core-core repulsion = 16527.939380 eV Total energy + Delta-G solvation = -3165.172067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44573 -38.62857 -36.73786 -35.86392 -34.79767 -33.25404 -30.47207 -29.43686 -28.91190 -25.18391 -24.88027 -22.03687 -21.47153 -20.76767 -20.06951 -18.06908 -17.42680 -17.24688 -16.64651 -15.56644 -15.21746 -14.93283 -14.61395 -13.97333 -13.75690 -13.47793 -13.09812 -12.73494 -12.43836 -12.40234 -12.21857 -11.82861 -11.65036 -11.43100 -11.23708 -11.19633 -11.05761 -10.86775 -10.78775 -10.63262 -10.36619 -9.85803 -9.84485 -9.35689 -9.08189 -7.66871 -7.02757 -6.68911 -4.28626 2.35754 2.73845 2.92749 3.01360 3.08832 3.11542 3.23320 3.93084 3.96730 4.64030 4.72136 4.87387 5.05811 5.20890 5.40471 5.50254 5.57454 5.64574 5.78390 5.81032 5.96996 6.01996 6.16151 6.19978 6.34858 6.58834 6.66776 6.94628 7.08315 7.17063 7.40182 7.53407 7.73603 7.98688 8.02132 8.19135 8.36978 8.61915 8.89775 8.95637 10.26151 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.029096 B = 0.004580 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.114267 B = 6111.686622 C = 6560.446807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.106 4.106 4 C 0.104 3.896 5 H 0.105 0.895 6 O -0.289 6.289 7 C -0.009 4.009 8 C -0.167 4.167 9 C -0.193 4.193 10 C 0.091 3.909 11 C -0.464 4.464 12 H 0.076 0.924 13 C 0.073 3.927 14 N -0.804 5.804 15 Si 0.911 3.089 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.267 1.267 19 C -0.128 4.128 20 C -0.114 4.114 21 C 0.448 3.552 22 O -0.488 6.488 23 O -0.521 6.521 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.280 0.720 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.868 2.773 6.403 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.144 4.144 4 C 0.045 3.955 5 H 0.122 0.878 6 O -0.204 6.204 7 C -0.052 4.052 8 C -0.186 4.186 9 C -0.212 4.212 10 C 0.088 3.912 11 C -0.494 4.494 12 H 0.094 0.906 13 C -0.143 4.143 14 N -0.430 5.430 15 Si 0.736 3.264 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.147 4.147 20 C -0.133 4.133 21 C 0.288 3.712 22 O -0.373 6.373 23 O -0.334 6.334 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.146 0.854 35 H 0.117 0.883 36 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -11.879 2.554 5.692 13.418 hybrid contribution 1.257 0.458 0.148 1.347 sum -10.622 3.012 5.840 12.490 Atomic orbital electron populations 1.21758 0.95674 1.01700 1.01621 1.21497 0.95670 0.95565 1.03394 1.21655 0.89926 0.99180 1.03617 1.21656 0.95773 0.86995 0.91110 0.87793 1.86019 1.32237 1.71168 1.30969 1.18604 0.85135 1.04919 0.96551 1.20318 0.96904 1.05313 0.96059 1.20575 0.96006 1.04651 1.00016 1.17603 0.92825 0.89882 0.90863 1.19433 1.00025 1.35763 0.94212 0.90606 1.25871 0.99222 0.94188 0.95032 1.69797 1.38175 1.33600 1.01451 0.86329 0.81048 0.81010 0.78056 1.18917 1.20382 1.19147 1.21016 0.91518 1.01938 1.00274 1.19819 0.97075 1.01151 0.95270 1.24596 0.77130 0.90044 0.79426 1.90763 1.36313 1.70290 1.39899 1.84534 1.75103 1.31723 1.42035 0.92591 0.92886 0.92725 0.90519 0.91675 0.89449 0.90560 0.89394 0.88626 0.90874 0.85429 0.88270 0.73628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.40 5.83 -26.73 -0.16 -1.55 16 3 C -0.11 -1.28 4.90 -26.73 -0.13 -1.41 16 4 C 0.10 1.67 2.15 -27.88 -0.06 1.61 16 5 H 0.10 1.59 6.26 -51.93 -0.32 1.27 16 6 O -0.29 -5.90 8.89 -38.62 -0.34 -6.24 16 7 C -0.01 -0.22 6.52 -38.78 -0.25 -0.47 16 8 C -0.17 -3.86 8.64 -39.83 -0.34 -4.20 16 9 C -0.19 -4.81 9.74 -39.25 -0.38 -5.19 16 10 C 0.09 2.44 5.55 -106.80 -0.59 1.85 16 11 C -0.46 -12.41 9.05 -37.83 -0.34 -12.75 16 12 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 13 C 0.07 1.86 5.22 -17.34 -0.09 1.77 16 14 N -0.80 -21.16 10.88 55.54 0.60 -20.55 16 15 Si 0.91 18.88 29.58 -169.99 -5.03 13.85 16 16 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 19 C -0.13 -3.37 8.61 -39.25 -0.34 -3.71 16 20 C -0.11 -2.80 9.92 -39.83 -0.40 -3.19 16 21 C 0.45 7.45 6.76 36.01 0.24 7.70 16 22 O -0.49 -10.25 17.16 -25.46 -0.44 -10.69 16 23 O -0.52 -6.38 13.39 -39.26 -0.53 -6.90 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.01 7.82 -51.93 -0.41 0.60 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.78 5.66 -52.48 -0.30 1.49 16 32 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 33 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 34 H 0.13 3.43 6.22 -52.49 -0.33 3.10 16 35 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.41 3.28 9.10 45.56 0.41 3.69 16 LS Contribution 310.22 15.07 4.67 4.67 Total: -1.00 -31.29 310.22 -7.40 -38.69 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -3.87 Total: 7.72 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -2.47 Total: -20.55 kcal Atomic # 7 Polarization: -21.16 SS G_CDS: 0.60 Total: -20.55 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -1.31 Total: -23.83 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.29 -7.40 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216251636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.210 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds