Wall clock time and date at job start Mon Mar 30 2020 06:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47140 * 2 1 4 4 C 1.53000 * 109.46853 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47378 * 305.00273 * 4 3 2 6 6 O 1.42897 * 109.47078 * 65.00448 * 4 3 2 7 7 C 1.35671 * 116.99939 * 205.46251 * 6 4 3 8 8 C 1.39312 * 119.81997 * 354.54689 * 7 6 4 9 9 C 1.36438 * 120.18584 * 180.02562 * 8 7 6 10 10 C 1.40833 * 119.81076 * 0.27622 * 9 8 7 11 11 C 1.41215 * 120.17311 * 179.72082 * 10 9 8 12 12 H 1.07999 * 120.00016 * 27.77192 * 11 10 9 13 13 C 1.39893 * 119.99768 * 207.76157 * 11 10 9 14 14 N 1.30879 * 119.99988 * 12.57843 * 13 11 10 15 15 Si 1.86799 * 120.00131 * 192.57937 * 13 11 10 16 16 H 1.48499 * 109.47142 * 59.99927 * 15 13 11 17 17 H 1.48493 * 109.47220 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46659 * 300.00090 * 15 13 11 19 19 C 1.40836 * 119.64357 * 359.43139 * 10 9 8 20 20 C 1.36435 * 119.80825 * 0.56800 * 19 10 9 21 21 C 1.50707 * 109.46887 * 184.99825 * 4 3 2 22 22 O 1.20826 * 120.00148 * 245.00222 * 21 4 3 23 23 O 1.34231 * 119.99471 * 65.00661 * 21 4 3 24 24 H 1.09001 * 109.47484 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46746 * 300.00070 * 1 2 3 26 26 H 1.09000 * 109.47014 * 59.99244 * 1 2 3 27 27 H 1.09003 * 109.46746 * 239.99930 * 2 1 3 28 28 H 1.08998 * 109.46696 * 120.00318 * 2 1 3 29 29 H 1.09003 * 109.47358 * 60.00305 * 3 2 1 30 30 H 1.08993 * 109.47190 * 299.99989 * 3 2 1 31 31 H 1.08003 * 119.90559 * 359.97438 * 8 7 6 32 32 H 1.08005 * 120.09131 * 180.02562 * 9 8 7 33 33 H 0.97000 * 120.00381 * 179.97438 * 14 13 11 34 34 H 1.07994 * 120.09224 * 180.29424 * 19 10 9 35 35 H 1.08000 * 119.91055 * 179.70201 * 20 19 10 36 36 H 0.96702 * 116.99748 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8530 0.8426 6 8 4.0468 0.8729 -1.2201 7 6 5.2811 0.3102 -1.1965 8 6 6.0651 0.4076 -0.0490 9 6 7.3076 -0.1551 -0.0173 10 6 7.7994 -0.8308 -1.1508 11 6 9.0867 -1.4109 -1.1284 12 1 9.5127 -1.7438 -0.1935 13 6 9.8099 -1.5547 -2.3172 14 7 9.4139 -0.9397 -3.4025 15 14 11.3407 -2.6244 -2.3557 16 1 10.9814 -4.0165 -1.9839 17 1 11.9201 -2.6106 -3.7229 18 1 12.3381 -2.0961 -1.3906 19 6 6.9980 -0.9302 -2.3047 20 6 5.7577 -0.3619 -2.3200 21 6 4.0724 2.8579 0.1244 22 8 4.6910 3.3610 -0.7833 23 8 3.8325 3.5596 1.2433 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 5.6885 0.9308 0.8175 32 1 7.9140 -0.0789 0.8733 33 1 9.9155 -1.0390 -4.2268 34 1 7.3660 -1.4508 -3.1763 35 1 5.1437 -0.4330 -3.2056 36 1 4.1748 4.4634 1.2765 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216251636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:48 Heat of formation + Delta-G solvation = -142.241333 kcal Electronic energy + Delta-G solvation = -19693.906812 eV Core-core repulsion = 16527.939380 eV Total energy + Delta-G solvation = -3165.967432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.83377 -40.22517 -38.42052 -37.12215 -35.98287 -35.05601 -32.00147 -31.14406 -30.61849 -26.79238 -26.22063 -23.65217 -22.79946 -22.28430 -21.55548 -19.44954 -19.20597 -18.86964 -17.95802 -17.11520 -16.79286 -16.29834 -15.87399 -15.73622 -15.11048 -14.86411 -14.59733 -14.11660 -14.04476 -13.98296 -13.68871 -13.26483 -12.93705 -12.80084 -12.75709 -12.65825 -12.49120 -12.28916 -12.04757 -11.99817 -11.70788 -11.53132 -11.30870 -11.20360 -10.92323 -9.61031 -8.94187 -8.57948 -6.27818 0.90712 0.95692 1.07670 1.39796 1.50703 1.52933 1.82192 2.23231 2.48140 2.73750 3.63995 3.65250 3.77736 4.09072 4.16763 4.21167 4.29416 4.38343 4.63947 4.70209 4.84158 4.87558 5.00231 5.01717 5.15556 5.24492 5.28522 5.35397 5.46688 5.50376 5.54495 5.61290 5.80784 6.02635 6.21840 6.48771 6.69490 6.91033 6.93602 7.02944 8.39206 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.029096 B = 0.004580 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.114267 B = 6111.686622 C = 6560.446807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.098 4.098 4 C 0.092 3.908 5 H 0.116 0.884 6 O -0.299 6.299 7 C 0.003 3.997 8 C -0.168 4.168 9 C -0.203 4.203 10 C 0.057 3.943 11 C -0.499 4.499 12 H 0.078 0.922 13 C 0.031 3.969 14 N -0.839 5.839 15 Si 0.986 3.014 16 H -0.258 1.258 17 H -0.270 1.270 18 H -0.261 1.261 19 C -0.145 4.145 20 C -0.130 4.130 21 C 0.457 3.543 22 O -0.540 6.540 23 O -0.500 6.500 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.287 0.713 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 3.096 7.999 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.135 4.135 4 C 0.033 3.967 5 H 0.134 0.866 6 O -0.214 6.214 7 C -0.041 4.041 8 C -0.186 4.186 9 C -0.223 4.223 10 C 0.055 3.945 11 C -0.529 4.529 12 H 0.096 0.904 13 C -0.182 4.182 14 N -0.466 5.466 15 Si 0.807 3.193 16 H -0.183 1.183 17 H -0.194 1.194 18 H -0.185 1.185 19 C -0.165 4.165 20 C -0.148 4.148 21 C 0.299 3.701 22 O -0.429 6.429 23 O -0.314 6.314 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.137 0.863 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -12.905 2.903 7.331 15.123 hybrid contribution 1.371 0.497 -0.237 1.477 sum -11.534 3.400 7.093 13.961 Atomic orbital electron populations 1.21728 0.93731 1.02392 1.02494 1.21499 0.97360 0.94822 1.02502 1.21740 0.86749 1.00034 1.04997 1.22157 0.98174 0.86710 0.89635 0.86635 1.86006 1.30551 1.71123 1.33734 1.18664 0.86120 1.03369 0.95916 1.20577 0.96193 1.04802 0.97054 1.20814 0.96994 1.04557 0.99925 1.17956 0.93567 0.91119 0.91845 1.19714 1.00642 1.37434 0.95148 0.90393 1.26763 1.02404 0.94905 0.94152 1.69871 1.39812 1.34730 1.02177 0.85192 0.76737 0.78960 0.78418 1.18256 1.19443 1.18516 1.20950 0.92460 1.03059 1.00021 1.20007 0.96845 1.01472 0.96515 1.24572 0.75846 0.90243 0.79450 1.90762 1.38804 1.71465 1.41864 1.84467 1.74336 1.33139 1.39495 0.92081 0.91183 0.92671 0.93012 0.91062 0.86311 0.90782 0.86398 0.87487 0.90285 0.86910 0.87061 0.71073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.12 -2.54 5.83 30.59 0.18 -2.36 16 3 C -0.10 -2.09 4.90 30.59 0.15 -1.94 16 4 C 0.09 2.75 2.15 29.85 0.06 2.81 16 5 H 0.12 3.21 6.26 -2.39 -0.01 3.20 16 6 O -0.30 -11.98 8.89 -70.85 -0.63 -12.61 16 7 C 0.00 0.13 6.52 22.79 0.15 0.28 16 8 C -0.17 -7.61 8.64 22.11 0.19 -7.42 16 9 C -0.20 -10.22 9.74 22.48 0.22 -10.00 16 10 C 0.06 3.18 5.55 -21.28 -0.12 3.06 16 11 C -0.50 -27.39 9.05 23.40 0.21 -27.17 16 12 H 0.08 4.06 7.88 -2.91 -0.02 4.04 16 13 C 0.03 1.58 5.22 85.24 0.44 2.03 16 14 N -0.84 -45.37 10.88 21.82 0.24 -45.13 16 15 Si 0.99 38.94 29.58 68.60 2.03 40.97 16 16 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 17 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 19 C -0.15 -7.95 8.61 22.48 0.19 -7.76 16 20 C -0.13 -6.49 9.92 22.11 0.22 -6.27 16 21 C 0.46 14.18 6.76 71.24 0.48 14.66 16 22 O -0.54 -22.20 17.16 28.38 0.49 -21.72 16 23 O -0.50 -10.48 13.39 -51.43 -0.69 -11.17 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 1.31 7.82 -2.39 -0.02 1.30 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.12 1.84 8.11 -2.39 -0.02 1.82 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.12 4.53 5.66 -2.91 -0.02 4.51 16 32 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 33 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 34 H 0.11 6.38 6.22 -2.91 -0.02 6.36 16 35 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 36 H 0.43 5.42 9.10 -74.06 -0.67 4.75 16 Total: -1.00 -69.23 310.22 4.96 -64.27 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.42 Total: 27.01 kcal Atomic # 6 Polarization: -44.73 SS G_CDS: 3.10 Total: -41.63 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.24 Total: -45.13 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.83 Total: -45.50 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -69.23 4.96 -64.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216251636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.970 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds