Wall clock time and date at job start Mon Mar 30 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38306 * 119.96151 * 2 1 4 4 C 1.38266 * 120.14939 * 179.69893 * 3 2 1 5 5 C 1.38130 * 120.07570 * 0.27928 * 4 3 2 6 6 C 1.38887 * 119.92090 * 359.97438 * 5 4 3 7 7 N 1.39675 * 120.07412 * 179.97438 * 6 5 4 8 8 C 1.46905 * 110.99836 * 296.04543 * 7 6 5 9 9 C 1.46900 * 111.00050 * 59.99686 * 7 6 5 10 10 H 1.09004 * 109.47631 * 300.00196 * 9 7 6 11 11 C 1.53001 * 109.47264 * 60.00523 * 9 7 6 12 12 C 1.50707 * 109.47107 * 180.02562 * 9 7 6 13 13 H 1.07994 * 119.99927 * 0.02562 * 12 9 7 14 14 C 1.37877 * 119.99873 * 180.02562 * 12 9 7 15 15 N 1.31510 * 120.00008 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 119.99881 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47489 * 89.99858 * 16 14 12 18 18 H 1.48498 * 109.47317 * 209.99910 * 16 14 12 19 19 H 1.48500 * 109.47187 * 329.99871 * 16 14 12 20 20 C 1.38084 * 119.96386 * 180.24890 * 2 1 3 21 21 N 1.48004 * 120.03985 * 0.02573 * 20 2 1 22 22 O 1.21800 * 119.99925 * 270.27321 * 21 20 2 23 23 O 1.21799 * 120.00133 * 90.27139 * 21 20 2 24 24 H 1.09002 * 109.47017 * 89.99935 * 1 2 3 25 25 H 1.09001 * 109.46776 * 210.00065 * 1 2 3 26 26 H 1.09003 * 109.47041 * 330.00015 * 1 2 3 27 27 H 1.08002 * 119.92786 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.96613 * 180.29812 * 4 3 2 29 29 H 1.07994 * 120.03667 * 180.02562 * 5 4 3 30 30 H 1.09006 * 109.46990 * 59.99976 * 8 7 6 31 31 H 1.09003 * 109.47220 * 179.97438 * 8 7 6 32 32 H 1.08992 * 109.47035 * 299.99871 * 8 7 6 33 33 H 1.08994 * 109.47241 * 180.02562 * 11 9 7 34 34 H 1.09005 * 109.46502 * 300.00062 * 11 9 7 35 35 H 1.09004 * 109.47064 * 59.99326 * 11 9 7 36 36 H 0.97004 * 120.00019 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2028 0.0063 5 6 4.2765 0.0097 0.0068 6 6 3.5860 -1.1953 0.0015 7 7 4.2867 -2.4036 0.0014 8 6 5.0763 -2.5541 -1.2282 9 6 5.1396 -2.5176 1.1920 10 1 5.8573 -1.6974 1.2048 11 6 4.2706 -2.4547 2.4497 12 6 5.8786 -3.8306 1.1567 13 1 5.7299 -4.5119 0.3321 14 6 6.7445 -4.1619 2.1772 15 7 6.9259 -3.3320 3.1811 16 14 7.6610 -5.7890 2.1330 17 1 8.9553 -5.6092 1.4275 18 1 7.9140 -6.2524 3.5210 19 1 6.8423 -6.7990 1.4155 20 6 2.1966 -1.1963 -0.0052 21 7 1.4567 -2.4781 -0.0113 22 8 1.1475 -3.0078 1.0409 23 8 1.1570 -3.0032 -1.0687 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6559 2.1325 -0.0004 28 1 4.1167 2.1402 0.0111 29 1 5.3564 0.0140 0.0121 30 1 5.7918 -1.7351 -1.3031 31 1 5.6122 -3.5029 -1.2021 32 1 4.4114 -2.5357 -2.0916 33 1 4.9035 -2.5388 3.3331 34 1 3.7364 -1.5048 2.4750 35 1 3.5529 -3.2749 2.4369 36 1 7.5354 -3.5650 3.8988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235066231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:16 Heat of formation + Delta-G solvation = 31.406428 kcal Electronic energy + Delta-G solvation = -20778.579103 eV Core-core repulsion = 17652.434354 eV Total energy + Delta-G solvation = -3126.144749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.69615 -39.71472 -36.97700 -35.87102 -33.27500 -32.63504 -30.72828 -29.30620 -27.42679 -26.06039 -25.20649 -24.37028 -22.01544 -21.76161 -19.56874 -18.71508 -18.19635 -17.16933 -16.44463 -15.91102 -15.22788 -15.09580 -14.62270 -14.17096 -13.80146 -13.70960 -13.28709 -12.66954 -12.43424 -12.27150 -12.10251 -11.84396 -11.54155 -11.15502 -11.06384 -10.92092 -10.80150 -10.55712 -10.53735 -10.30670 -10.24688 -10.12667 -9.22365 -9.10613 -8.68292 -8.55637 -7.77208 -6.13486 -4.19344 0.88302 1.11816 1.15785 1.96116 3.25228 3.32675 3.37359 3.41040 4.12727 4.37760 4.51990 4.82145 4.99455 5.06401 5.18220 5.19578 5.32034 5.37732 5.50191 5.76115 5.90795 5.96781 6.04501 6.19550 6.27191 6.48159 6.54155 6.68840 6.84773 6.91217 6.99265 7.25927 7.52541 7.67713 7.88485 8.11672 8.19058 8.34015 8.84061 9.46126 10.93420 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.025543 B = 0.006624 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.939808 B = 4226.310732 C = 4613.616752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.041 4.041 3 C -0.131 4.131 4 C -0.074 4.074 5 C -0.148 4.148 6 C 0.178 3.822 7 N -0.524 5.524 8 C 0.041 3.959 9 C 0.220 3.780 10 H 0.008 0.992 11 C -0.135 4.135 12 C -0.511 4.511 13 H 0.066 0.934 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.901 3.099 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.018 4.018 21 N 0.042 4.958 22 O -0.138 6.138 23 O -0.158 6.158 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.024 0.976 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.003 0.997 35 H 0.042 0.958 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 10.301 -6.327 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.043 4.043 3 C -0.149 4.149 4 C -0.092 4.092 5 C -0.169 4.169 6 C 0.081 3.919 7 N -0.247 5.247 8 C -0.105 4.105 9 C 0.117 3.883 10 H 0.026 0.974 11 C -0.193 4.193 12 C -0.549 4.549 13 H 0.084 0.916 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.729 3.271 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.099 4.099 21 N 0.572 4.428 22 O -0.363 6.363 23 O -0.378 6.378 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.159 0.841 30 H 0.042 0.958 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.022 0.978 35 H 0.062 0.938 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.430 10.559 -6.147 14.300 hybrid contribution 1.023 -0.515 0.145 1.154 sum -6.408 10.045 -6.001 13.340 Atomic orbital electron populations 1.20955 0.89873 1.04068 1.03455 1.19460 0.96719 0.90511 0.97601 1.20875 0.94193 0.96431 1.03444 1.21300 0.94060 0.98352 0.95522 1.21824 1.01500 0.91737 1.01801 1.18714 0.89910 0.91876 0.91354 1.60131 1.32217 1.26131 1.06197 1.22312 0.95737 1.02875 0.89572 1.19465 0.88371 0.97410 0.83086 0.97401 1.21848 0.99054 0.96925 1.01465 1.21061 1.23633 1.02632 1.07615 0.91567 1.24909 0.96629 0.97320 0.95054 1.69881 1.36576 1.36090 1.10352 0.86438 0.79781 0.83506 0.77412 1.20686 1.21063 1.19636 1.20799 0.91335 0.83116 1.14691 1.43170 0.97934 1.01633 1.00026 1.94538 1.55906 1.64653 1.21211 1.94478 1.57206 1.65379 1.20746 0.89885 0.91362 0.89823 0.84382 0.84742 0.84106 0.95787 0.88946 0.93112 0.89081 0.97821 0.93839 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.76 36.00 0.35 -1.12 16 2 C -0.04 -0.60 5.88 -104.65 -0.62 -1.21 16 3 C -0.13 -1.55 9.70 -39.55 -0.38 -1.94 16 4 C -0.07 -0.92 10.04 -39.61 -0.40 -1.32 16 5 C -0.15 -2.40 8.57 -39.38 -0.34 -2.74 16 6 C 0.18 3.43 3.31 -83.79 -0.28 3.15 16 7 N -0.52 -11.54 4.33 -172.66 -0.75 -12.29 16 8 C 0.04 0.80 9.10 60.07 0.55 1.35 16 9 C 0.22 5.49 1.84 -68.86 -0.13 5.36 16 10 H 0.01 0.22 7.12 -51.93 -0.37 -0.15 16 11 C -0.13 -3.42 8.85 37.16 0.33 -3.09 16 12 C -0.51 -13.83 7.88 -34.44 -0.27 -14.10 16 13 H 0.07 1.79 6.40 -52.49 -0.34 1.46 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 15 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 16 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.02 -0.33 6.14 -79.75 -0.49 -0.81 16 21 N 0.04 0.86 3.01 34.06 0.10 0.96 16 22 O -0.14 -2.99 19.11 -29.46 -0.56 -3.55 16 23 O -0.16 -3.23 19.25 -29.46 -0.57 -3.79 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.90 7.31 -51.93 -0.38 0.52 16 26 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 27 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.14 2.27 7.02 -52.49 -0.37 1.90 16 30 H 0.02 0.43 7.34 -51.93 -0.38 0.05 16 31 H 0.09 1.90 6.10 -51.93 -0.32 1.58 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 34 H 0.00 0.07 7.22 -51.93 -0.37 -0.31 16 35 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -30.21 305.78 -7.84 -38.05 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.51 Total: -0.98 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.77 Total: -14.85 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.02 Total: -35.61 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -1.13 Total: -7.34 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.21 -7.84 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235066231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.452 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds