Wall clock time and date at job start Mon Mar 30 2020 07:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38306 * 119.96151 * 2 1 4 4 C 1.38266 * 120.14939 * 179.69893 * 3 2 1 5 5 C 1.38130 * 120.07570 * 0.27928 * 4 3 2 6 6 C 1.38887 * 119.92090 * 359.97438 * 5 4 3 7 7 N 1.39675 * 120.07412 * 179.97438 * 6 5 4 8 8 C 1.46905 * 110.99836 * 296.04543 * 7 6 5 9 9 C 1.46900 * 111.00050 * 59.99686 * 7 6 5 10 10 H 1.09004 * 109.47631 * 300.00196 * 9 7 6 11 11 C 1.53001 * 109.47264 * 60.00523 * 9 7 6 12 12 C 1.50707 * 109.47107 * 180.02562 * 9 7 6 13 13 H 1.07994 * 119.99927 * 0.02562 * 12 9 7 14 14 C 1.37877 * 119.99873 * 180.02562 * 12 9 7 15 15 N 1.31510 * 120.00008 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 119.99881 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47489 * 89.99858 * 16 14 12 18 18 H 1.48498 * 109.47317 * 209.99910 * 16 14 12 19 19 H 1.48500 * 109.47187 * 329.99871 * 16 14 12 20 20 C 1.38084 * 119.96386 * 180.24890 * 2 1 3 21 21 N 1.48004 * 120.03985 * 0.02573 * 20 2 1 22 22 O 1.21800 * 119.99925 * 270.27321 * 21 20 2 23 23 O 1.21799 * 120.00133 * 90.27139 * 21 20 2 24 24 H 1.09002 * 109.47017 * 89.99935 * 1 2 3 25 25 H 1.09001 * 109.46776 * 210.00065 * 1 2 3 26 26 H 1.09003 * 109.47041 * 330.00015 * 1 2 3 27 27 H 1.08002 * 119.92786 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.96613 * 180.29812 * 4 3 2 29 29 H 1.07994 * 120.03667 * 180.02562 * 5 4 3 30 30 H 1.09006 * 109.46990 * 59.99976 * 8 7 6 31 31 H 1.09003 * 109.47220 * 179.97438 * 8 7 6 32 32 H 1.08992 * 109.47035 * 299.99871 * 8 7 6 33 33 H 1.08994 * 109.47241 * 180.02562 * 11 9 7 34 34 H 1.09005 * 109.46502 * 300.00062 * 11 9 7 35 35 H 1.09004 * 109.47064 * 59.99326 * 11 9 7 36 36 H 0.97004 * 120.00019 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2028 0.0063 5 6 4.2765 0.0097 0.0068 6 6 3.5860 -1.1953 0.0015 7 7 4.2867 -2.4036 0.0014 8 6 5.0763 -2.5541 -1.2282 9 6 5.1396 -2.5176 1.1920 10 1 5.8573 -1.6974 1.2048 11 6 4.2706 -2.4547 2.4497 12 6 5.8786 -3.8306 1.1567 13 1 5.7299 -4.5119 0.3321 14 6 6.7445 -4.1619 2.1772 15 7 6.9259 -3.3320 3.1811 16 14 7.6610 -5.7890 2.1330 17 1 8.9553 -5.6092 1.4275 18 1 7.9140 -6.2524 3.5210 19 1 6.8423 -6.7990 1.4155 20 6 2.1966 -1.1963 -0.0052 21 7 1.4567 -2.4781 -0.0113 22 8 1.1475 -3.0078 1.0409 23 8 1.1570 -3.0032 -1.0687 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6559 2.1325 -0.0004 28 1 4.1167 2.1402 0.0111 29 1 5.3564 0.0140 0.0121 30 1 5.7918 -1.7351 -1.3031 31 1 5.6122 -3.5029 -1.2021 32 1 4.4114 -2.5357 -2.0916 33 1 4.9035 -2.5388 3.3331 34 1 3.7364 -1.5048 2.4750 35 1 3.5529 -3.2749 2.4369 36 1 7.5354 -3.5650 3.8988 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235066231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:15 Heat of formation + Delta-G solvation = 14.176887 kcal Electronic energy + Delta-G solvation = -20779.326232 eV Core-core repulsion = 17652.434354 eV Total energy + Delta-G solvation = -3126.891878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19209 -41.07480 -38.46591 -37.46097 -35.12925 -33.84462 -32.18608 -31.16890 -28.62889 -27.60470 -26.91880 -26.03322 -23.61686 -23.04336 -21.17682 -20.09750 -19.76570 -18.68628 -18.29310 -17.43091 -16.91565 -16.45414 -15.89213 -15.85074 -15.06352 -14.89256 -14.84406 -14.25825 -13.89083 -13.59036 -13.30252 -13.07666 -13.04599 -12.93076 -12.74699 -12.67627 -12.57180 -12.28452 -12.19328 -12.11545 -12.10264 -12.02834 -11.14867 -10.63130 -10.37698 -9.86183 -9.47020 -8.21642 -6.34108 -0.45764 -0.30576 -0.04539 0.55332 1.37598 1.40463 1.50718 2.27158 2.35823 2.78855 3.08530 3.46884 3.72051 3.90034 3.94860 4.08358 4.21894 4.36832 4.45716 4.48790 4.57321 4.64160 4.81849 4.84156 4.90017 4.97301 5.02325 5.10389 5.16143 5.25099 5.29469 5.51732 5.58053 5.69267 6.00495 6.09687 6.51673 6.55573 6.74614 7.34811 8.84789 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.025543 B = 0.006624 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.939808 B = 4226.310732 C = 4613.616752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.044 4.044 3 C -0.108 4.108 4 C -0.055 4.055 5 C -0.161 4.161 6 C 0.139 3.861 7 N -0.540 5.540 8 C 0.046 3.954 9 C 0.231 3.769 10 H -0.010 1.010 11 C -0.115 4.115 12 C -0.530 4.530 13 H 0.058 0.942 14 C 0.019 3.981 15 N -0.915 5.915 16 Si 0.962 3.038 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.274 1.274 20 C -0.046 4.046 21 N 0.046 4.954 22 O -0.184 6.184 23 O -0.154 6.154 24 H 0.098 0.902 25 H 0.043 0.957 26 H 0.120 0.880 27 H 0.192 0.808 28 H 0.180 0.820 29 H 0.134 0.866 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.014 0.986 35 H 0.020 0.980 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 12.947 -7.185 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.045 4.045 3 C -0.126 4.126 4 C -0.073 4.073 5 C -0.182 4.182 6 C 0.044 3.956 7 N -0.263 5.263 8 C -0.100 4.100 9 C 0.127 3.873 10 H 0.007 0.993 11 C -0.173 4.173 12 C -0.568 4.568 13 H 0.076 0.924 14 C -0.181 4.181 15 N -0.554 5.554 16 Si 0.787 3.213 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.199 1.199 20 C -0.127 4.127 21 N 0.573 4.427 22 O -0.400 6.400 23 O -0.380 6.380 24 H 0.117 0.883 25 H 0.062 0.938 26 H 0.139 0.861 27 H 0.209 0.791 28 H 0.197 0.803 29 H 0.152 0.848 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.942 13.205 -6.949 16.903 hybrid contribution 1.115 -1.187 0.314 1.658 sum -6.827 12.018 -6.635 15.332 Atomic orbital electron populations 1.21066 0.87870 1.04695 1.04618 1.20010 0.98322 0.89810 0.96377 1.21509 0.94034 0.97151 0.99890 1.21809 0.94623 0.98456 0.92445 1.21874 1.01363 0.92155 1.02760 1.18812 0.90101 0.91778 0.94940 1.59866 1.31816 1.28990 1.05638 1.22260 0.96067 1.02282 0.89415 1.19115 0.88109 0.95725 0.84346 0.99288 1.21590 0.98058 0.96555 1.01082 1.21330 1.24288 1.03564 1.07584 0.92412 1.25659 0.97349 1.00413 0.94682 1.69982 1.37067 1.37557 1.10785 0.85489 0.78791 0.79520 0.77461 1.19499 1.20633 1.19897 1.21115 0.91136 0.82845 1.17613 1.43562 0.97419 1.02308 0.99424 1.94527 1.57875 1.66045 1.21601 1.94428 1.56849 1.65941 1.20782 0.88342 0.93814 0.86101 0.79110 0.80277 0.84791 0.94642 0.90777 0.91594 0.91202 0.96652 0.96043 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.76 71.24 0.70 -1.83 16 2 C -0.04 -1.13 5.88 -19.89 -0.12 -1.24 16 3 C -0.11 -1.97 9.70 22.29 0.22 -1.76 16 4 C -0.06 -1.13 10.04 22.25 0.22 -0.90 16 5 C -0.16 -4.96 8.57 22.40 0.19 -4.77 16 6 C 0.14 5.35 3.31 38.21 0.13 5.48 16 7 N -0.54 -24.46 4.33 -700.19 -3.03 -27.49 16 8 C 0.05 1.83 9.10 127.69 1.16 2.99 16 9 C 0.23 11.95 1.84 44.17 0.08 12.03 16 10 H -0.01 -0.56 7.12 -2.38 -0.02 -0.58 16 11 C -0.11 -6.04 8.85 71.98 0.64 -5.40 16 12 C -0.53 -29.57 7.88 25.60 0.20 -29.37 16 13 H 0.06 3.25 6.40 -2.91 -0.02 3.23 16 14 C 0.02 1.03 5.30 84.66 0.45 1.48 16 15 N -0.91 -52.19 11.32 21.45 0.24 -51.95 16 16 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 C -0.05 -1.66 6.14 36.51 0.22 -1.44 16 21 N 0.05 1.91 3.01 -46.16 -0.14 1.77 16 22 O -0.18 -8.37 19.11 18.89 0.36 -8.01 16 23 O -0.15 -6.41 19.25 18.89 0.36 -6.04 16 24 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.04 1.11 7.31 -2.39 -0.02 1.09 16 26 H 0.12 1.50 8.09 -2.39 -0.02 1.49 16 27 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 28 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 29 H 0.13 4.24 7.02 -2.91 -0.02 4.22 16 30 H 0.04 1.29 7.34 -2.38 -0.02 1.27 16 31 H 0.07 3.16 6.10 -2.39 -0.01 3.15 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 34 H 0.01 0.72 7.22 -2.38 -0.02 0.70 16 35 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -69.37 305.78 5.00 -64.37 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.09 Total: 6.02 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 4.09 Total: -24.73 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -2.93 Total: -77.66 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.72 Total: -14.05 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.37 5.00 -64.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235066231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.544 kcal (2) G-P(sol) polarization free energy of solvation -69.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds