Wall clock time and date at job start Mon Mar 30 2020 07:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38310 * 119.95902 * 2 1 4 4 C 1.38267 * 120.14614 * 179.75166 * 3 2 1 5 5 C 1.38124 * 120.07891 * 0.25303 * 4 3 2 6 6 C 1.38893 * 119.92021 * 0.02562 * 5 4 3 7 7 N 1.39673 * 120.07199 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00095 * 294.72806 * 7 6 5 9 9 C 1.46898 * 111.00271 * 58.68389 * 7 6 5 10 10 H 1.09002 * 109.47535 * 294.89783 * 9 7 6 11 11 C 1.53001 * 109.47416 * 174.89542 * 9 7 6 12 12 C 1.50700 * 109.46988 * 54.89578 * 9 7 6 13 13 H 1.08005 * 120.00388 * 0.02562 * 12 9 7 14 14 C 1.37883 * 120.00062 * 179.97438 * 12 9 7 15 15 N 1.31515 * 120.00061 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00064 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46819 * 90.00162 * 16 14 12 18 18 H 1.48501 * 109.47252 * 210.00295 * 16 14 12 19 19 H 1.48503 * 109.47141 * 330.00357 * 16 14 12 20 20 C 1.38085 * 119.96715 * 180.26293 * 2 1 3 21 21 N 1.48005 * 120.03202 * 359.97438 * 20 2 1 22 22 O 1.21800 * 119.99865 * 270.24784 * 21 20 2 23 23 O 1.21801 * 120.00195 * 90.25720 * 21 20 2 24 24 H 1.08996 * 109.47485 * 89.99812 * 1 2 3 25 25 H 1.08998 * 109.46751 * 209.99987 * 1 2 3 26 26 H 1.09000 * 109.46902 * 329.99254 * 1 2 3 27 27 H 1.07990 * 119.92805 * 0.02562 * 3 2 1 28 28 H 1.08000 * 119.95844 * 180.27825 * 4 3 2 29 29 H 1.07993 * 120.04169 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.46674 * 60.00296 * 8 7 6 31 31 H 1.09005 * 109.46924 * 180.02562 * 8 7 6 32 32 H 1.08993 * 109.47169 * 300.00592 * 8 7 6 33 33 H 1.08992 * 109.46867 * 65.97208 * 11 9 7 34 34 H 1.09000 * 109.47293 * 185.97219 * 11 9 7 35 35 H 1.09000 * 109.46876 * 305.97335 * 11 9 7 36 36 H 0.97000 * 120.00162 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5803 1.2028 0.0052 5 6 4.2765 0.0098 0.0051 6 6 3.5860 -1.1952 -0.0007 7 7 4.2868 -2.4034 -0.0003 8 6 5.0528 -2.5682 -1.2429 9 6 5.1622 -2.5039 1.1750 10 1 5.9363 -1.7386 1.1181 11 6 5.8145 -3.8875 1.2085 12 6 4.3477 -2.3022 2.4268 13 1 3.2857 -2.1183 2.3563 14 6 4.9579 -2.3536 3.6622 15 7 6.2509 -2.5781 3.7481 16 14 3.9484 -2.1029 5.2137 17 1 3.4365 -3.4136 5.6883 18 1 4.8010 -1.4939 6.2661 19 1 2.8050 -1.2018 4.9202 20 6 2.1967 -1.1962 -0.0055 21 7 1.4567 -2.4780 -0.0108 22 8 1.1487 -3.0077 1.0418 23 8 1.1559 -3.0032 -1.0678 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 1.6559 2.1325 0.0004 28 1 4.1166 2.1403 0.0097 29 1 5.3564 0.0141 0.0096 30 1 5.7666 -1.7502 -1.3408 31 1 5.5885 -3.5172 -1.2163 32 1 4.3715 -2.5596 -2.0936 33 1 6.4868 -3.9928 0.3570 34 1 6.3795 -4.0006 2.1337 35 1 5.0418 -4.6547 1.1584 36 1 6.6803 -2.6138 4.6172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235421971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:18 Heat of formation + Delta-G solvation = 31.591230 kcal Electronic energy + Delta-G solvation = -21015.409487 eV Core-core repulsion = 17889.272752 eV Total energy + Delta-G solvation = -3126.136735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56351 -39.57051 -36.95143 -35.74259 -33.19719 -32.53330 -30.89444 -28.89879 -27.32563 -26.17377 -25.24048 -24.40308 -21.78572 -21.61762 -19.50194 -18.54710 -18.06966 -16.99585 -16.63503 -15.90634 -15.12782 -14.93983 -14.48695 -14.10192 -13.73621 -13.59709 -13.37810 -12.64732 -12.39860 -12.09571 -12.01297 -11.84483 -11.55568 -11.10441 -10.95905 -10.82137 -10.72594 -10.49341 -10.48703 -10.40249 -10.33200 -10.02267 -9.13129 -8.99208 -8.58584 -8.43999 -7.80287 -6.10948 -4.16057 1.07032 1.28165 1.31829 2.11000 3.30187 3.36407 3.42257 3.59078 4.20678 4.42385 4.66170 4.93435 5.15041 5.18941 5.22974 5.34216 5.43686 5.52677 5.62305 5.75393 5.81724 5.92581 6.17799 6.20855 6.32150 6.43786 6.61372 6.67899 6.82273 6.88459 7.03319 7.19562 7.49941 7.71372 7.94236 8.09720 8.30765 8.32260 8.89881 9.50328 10.95263 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.008964 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.473465 B = 3122.896673 C = 3383.315930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.043 4.043 3 C -0.132 4.132 4 C -0.075 4.075 5 C -0.138 4.138 6 C 0.200 3.800 7 N -0.526 5.526 8 C 0.029 3.971 9 C 0.218 3.782 10 H 0.009 0.991 11 C -0.135 4.135 12 C -0.509 4.509 13 H 0.066 0.934 14 C 0.065 3.935 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.273 1.273 20 C -0.016 4.016 21 N 0.042 4.958 22 O -0.129 6.129 23 O -0.169 6.169 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.011 0.989 34 H 0.094 0.906 35 H 0.037 0.963 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 7.703 -8.373 12.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.045 4.045 3 C -0.151 4.151 4 C -0.093 4.093 5 C -0.159 4.159 6 C 0.104 3.896 7 N -0.249 5.249 8 C -0.118 4.118 9 C 0.115 3.885 10 H 0.027 0.973 11 C -0.193 4.193 12 C -0.547 4.547 13 H 0.084 0.916 14 C -0.137 4.137 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.197 1.197 20 C -0.097 4.097 21 N 0.572 4.428 22 O -0.357 6.357 23 O -0.386 6.386 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.878 7.931 -8.246 12.438 hybrid contribution 0.084 0.343 0.977 1.038 sum -4.793 8.274 -7.270 12.012 Atomic orbital electron populations 1.20933 0.90084 1.04006 1.03210 1.19405 0.96562 0.90580 0.97937 1.20815 0.94198 0.96311 1.03781 1.21231 0.94032 0.98257 0.95811 1.21644 1.01117 0.91694 1.01416 1.18298 0.89450 0.91186 0.90627 1.60074 1.31716 1.27934 1.05146 1.22413 0.96638 1.01697 0.91030 1.19479 0.89618 0.94593 0.84838 0.97347 1.21870 0.98883 0.97377 1.01203 1.21141 0.95214 1.48628 0.89698 0.91631 1.24853 0.94921 0.94794 0.99097 1.69870 1.09119 1.49437 1.24705 0.86485 0.79968 0.78781 0.82286 1.20230 1.21356 1.19731 1.20704 0.91313 0.82923 1.14800 1.43200 0.97921 1.01719 0.99947 1.94560 1.55516 1.64564 1.21095 1.94451 1.57613 1.65658 1.20919 0.90073 0.91454 0.89936 0.84606 0.84963 0.84505 0.95609 0.90226 0.92331 0.97046 0.88750 0.94411 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.76 36.01 0.35 -1.29 16 2 C -0.04 -0.69 5.88 -104.65 -0.62 -1.31 16 3 C -0.13 -1.79 9.70 -39.54 -0.38 -2.17 16 4 C -0.07 -1.05 10.04 -39.61 -0.40 -1.45 16 5 C -0.14 -2.41 8.63 -39.38 -0.34 -2.75 16 6 C 0.20 4.07 3.40 -83.79 -0.28 3.79 16 7 N -0.53 -11.49 4.33 -172.68 -0.75 -12.23 16 8 C 0.03 0.52 9.13 60.07 0.55 1.07 16 9 C 0.22 5.37 1.73 -68.87 -0.12 5.26 16 10 H 0.01 0.23 7.24 -51.93 -0.38 -0.14 16 11 C -0.14 -3.27 8.66 37.16 0.32 -2.95 16 12 C -0.51 -13.94 8.03 -34.44 -0.28 -14.21 16 13 H 0.07 1.89 6.68 -52.48 -0.35 1.53 16 14 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 15 N -0.89 -24.91 11.29 55.43 0.63 -24.29 16 16 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 20 C -0.02 -0.31 5.81 -79.75 -0.46 -0.77 16 21 N 0.04 0.90 3.01 34.06 0.10 1.01 16 22 O -0.13 -3.02 18.87 -29.46 -0.56 -3.57 16 23 O -0.17 -3.54 19.25 -29.46 -0.57 -4.11 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.07 1.00 7.32 -51.93 -0.38 0.62 16 26 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 27 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.14 2.33 7.07 -52.49 -0.37 1.96 16 30 H 0.03 0.42 7.42 -51.93 -0.39 0.04 16 31 H 0.08 1.40 6.26 -51.93 -0.33 1.07 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.01 0.23 6.67 -51.93 -0.35 -0.12 16 34 H 0.09 2.49 5.93 -51.93 -0.31 2.19 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 305.19 15.07 4.60 4.60 Total: -1.00 -30.42 305.19 -7.83 -38.24 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.51 Total: -1.33 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -1.75 Total: -15.10 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.02 Total: -35.51 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -1.12 Total: -7.68 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.42 -7.83 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235421971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.835 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds