Wall clock time and date at job start Mon Mar 30 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38310 * 119.95902 * 2 1 4 4 C 1.38267 * 120.14614 * 179.75166 * 3 2 1 5 5 C 1.38124 * 120.07891 * 0.25303 * 4 3 2 6 6 C 1.38893 * 119.92021 * 0.02562 * 5 4 3 7 7 N 1.39673 * 120.07199 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00095 * 294.72806 * 7 6 5 9 9 C 1.46898 * 111.00271 * 58.68389 * 7 6 5 10 10 H 1.09002 * 109.47535 * 294.89783 * 9 7 6 11 11 C 1.53001 * 109.47416 * 174.89542 * 9 7 6 12 12 C 1.50700 * 109.46988 * 54.89578 * 9 7 6 13 13 H 1.08005 * 120.00388 * 0.02562 * 12 9 7 14 14 C 1.37883 * 120.00062 * 179.97438 * 12 9 7 15 15 N 1.31515 * 120.00061 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00064 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46819 * 90.00162 * 16 14 12 18 18 H 1.48501 * 109.47252 * 210.00295 * 16 14 12 19 19 H 1.48503 * 109.47141 * 330.00357 * 16 14 12 20 20 C 1.38085 * 119.96715 * 180.26293 * 2 1 3 21 21 N 1.48005 * 120.03202 * 359.97438 * 20 2 1 22 22 O 1.21800 * 119.99865 * 270.24784 * 21 20 2 23 23 O 1.21801 * 120.00195 * 90.25720 * 21 20 2 24 24 H 1.08996 * 109.47485 * 89.99812 * 1 2 3 25 25 H 1.08998 * 109.46751 * 209.99987 * 1 2 3 26 26 H 1.09000 * 109.46902 * 329.99254 * 1 2 3 27 27 H 1.07990 * 119.92805 * 0.02562 * 3 2 1 28 28 H 1.08000 * 119.95844 * 180.27825 * 4 3 2 29 29 H 1.07993 * 120.04169 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.46674 * 60.00296 * 8 7 6 31 31 H 1.09005 * 109.46924 * 180.02562 * 8 7 6 32 32 H 1.08993 * 109.47169 * 300.00592 * 8 7 6 33 33 H 1.08992 * 109.46867 * 65.97208 * 11 9 7 34 34 H 1.09000 * 109.47293 * 185.97219 * 11 9 7 35 35 H 1.09000 * 109.46876 * 305.97335 * 11 9 7 36 36 H 0.97000 * 120.00162 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5803 1.2028 0.0052 5 6 4.2765 0.0098 0.0051 6 6 3.5860 -1.1952 -0.0007 7 7 4.2868 -2.4034 -0.0003 8 6 5.0528 -2.5682 -1.2429 9 6 5.1622 -2.5039 1.1750 10 1 5.9363 -1.7386 1.1181 11 6 5.8145 -3.8875 1.2085 12 6 4.3477 -2.3022 2.4268 13 1 3.2857 -2.1183 2.3563 14 6 4.9579 -2.3536 3.6622 15 7 6.2509 -2.5781 3.7481 16 14 3.9484 -2.1029 5.2137 17 1 3.4365 -3.4136 5.6883 18 1 4.8010 -1.4939 6.2661 19 1 2.8050 -1.2018 4.9202 20 6 2.1967 -1.1962 -0.0055 21 7 1.4567 -2.4780 -0.0108 22 8 1.1487 -3.0077 1.0418 23 8 1.1559 -3.0032 -1.0678 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 1.6559 2.1325 0.0004 28 1 4.1166 2.1403 0.0097 29 1 5.3564 0.0141 0.0096 30 1 5.7666 -1.7502 -1.3408 31 1 5.5885 -3.5172 -1.2163 32 1 4.3715 -2.5596 -2.0936 33 1 6.4868 -3.9928 0.3570 34 1 6.3795 -4.0006 2.1337 35 1 5.0418 -4.6547 1.1584 36 1 6.6803 -2.6138 4.6172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235421971.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:17 Heat of formation + Delta-G solvation = 14.260514 kcal Electronic energy + Delta-G solvation = -21016.161004 eV Core-core repulsion = 17889.272752 eV Total energy + Delta-G solvation = -3126.888251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.14605 -40.99191 -38.45301 -37.41444 -35.09394 -33.81845 -32.42437 -30.66661 -28.65050 -27.70901 -26.88831 -26.13280 -23.33998 -22.99778 -21.17389 -20.01106 -19.71953 -18.55793 -18.46886 -17.55395 -16.78210 -16.35100 -15.87114 -15.83540 -15.08939 -14.93932 -14.80995 -14.09142 -13.92295 -13.57592 -13.26562 -13.09919 -13.02629 -12.82728 -12.72502 -12.63319 -12.54162 -12.39075 -12.30835 -12.12528 -12.00596 -11.92445 -11.08755 -10.62027 -10.28444 -9.76913 -9.46192 -8.19977 -6.30195 -0.40389 -0.21705 0.06108 0.61425 1.34058 1.38299 1.47121 2.34659 2.36951 2.82130 3.10263 3.51928 3.76351 3.95496 4.04192 4.13480 4.26059 4.34576 4.42670 4.49103 4.59108 4.64844 4.78796 4.88115 4.93487 4.94443 5.03251 5.12557 5.22194 5.29324 5.33111 5.55381 5.61844 5.68980 6.12351 6.20471 6.44178 6.61689 6.79781 7.38434 8.85349 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.008964 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.473465 B = 3122.896673 C = 3383.315930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.050 4.050 3 C -0.115 4.115 4 C -0.060 4.060 5 C -0.155 4.155 6 C 0.166 3.834 7 N -0.543 5.543 8 C 0.030 3.970 9 C 0.228 3.772 10 H -0.009 1.009 11 C -0.126 4.126 12 C -0.517 4.517 13 H 0.045 0.955 14 C 0.025 3.975 15 N -0.912 5.912 16 Si 0.947 3.053 17 H -0.280 1.280 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.048 4.048 21 N 0.047 4.953 22 O -0.194 6.194 23 O -0.146 6.146 24 H 0.100 0.900 25 H 0.040 0.960 26 H 0.116 0.884 27 H 0.187 0.813 28 H 0.177 0.823 29 H 0.134 0.866 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.023 0.977 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 10.513 -9.197 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.051 4.051 3 C -0.133 4.133 4 C -0.078 4.078 5 C -0.175 4.175 6 C 0.071 3.929 7 N -0.266 5.266 8 C -0.116 4.116 9 C 0.124 3.876 10 H 0.009 0.991 11 C -0.184 4.184 12 C -0.555 4.555 13 H 0.064 0.936 14 C -0.175 4.175 15 N -0.551 5.551 16 Si 0.773 3.227 17 H -0.205 1.205 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.129 4.129 21 N 0.574 4.426 22 O -0.407 6.407 23 O -0.375 6.375 24 H 0.118 0.882 25 H 0.059 0.941 26 H 0.135 0.865 27 H 0.205 0.795 28 H 0.194 0.806 29 H 0.152 0.848 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.528 10.735 -8.958 15.035 hybrid contribution 0.256 -0.437 1.050 1.165 sum -5.273 10.298 -7.908 14.014 Atomic orbital electron populations 1.21036 0.88101 1.04403 1.04550 1.19973 0.98221 0.90037 0.96906 1.21428 0.94136 0.97032 1.00666 1.21753 0.94595 0.98545 0.92903 1.21757 1.01176 0.92134 1.02446 1.18487 0.89649 0.91485 0.93314 1.59867 1.31559 1.29946 1.05236 1.22456 0.96977 1.02174 0.89996 1.19156 0.89208 0.93786 0.85471 0.99117 1.21709 0.98592 0.96989 1.01108 1.21252 0.94464 1.48562 0.91244 0.93636 1.25468 0.95834 0.94834 1.01370 1.69951 1.09928 1.50004 1.25253 0.85718 0.78809 0.78420 0.79750 1.20548 1.19986 1.19961 1.21072 0.91377 0.82682 1.17777 1.43553 0.97356 1.02314 0.99350 1.94557 1.58330 1.66216 1.21646 1.94389 1.56379 1.65869 1.20828 0.88155 0.94061 0.86494 0.79539 0.80610 0.84834 0.94178 0.90278 0.91137 0.94409 0.91088 0.95807 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 9.76 71.24 0.70 -2.22 16 2 C -0.05 -1.47 5.88 -19.88 -0.12 -1.59 16 3 C -0.11 -2.54 9.70 22.29 0.22 -2.33 16 4 C -0.06 -1.43 10.04 22.25 0.22 -1.21 16 5 C -0.15 -5.17 8.63 22.40 0.19 -4.98 16 6 C 0.17 6.72 3.40 38.21 0.13 6.85 16 7 N -0.54 -24.06 4.33 -700.22 -3.03 -27.09 16 8 C 0.03 1.07 9.13 127.69 1.17 2.23 16 9 C 0.23 11.50 1.73 44.17 0.08 11.58 16 10 H -0.01 -0.46 7.24 -2.39 -0.02 -0.47 16 11 C -0.13 -6.23 8.66 71.98 0.62 -5.61 16 12 C -0.52 -29.05 8.03 25.60 0.21 -28.85 16 13 H 0.05 2.71 6.68 -2.91 -0.02 2.69 16 14 C 0.02 1.37 5.29 84.66 0.45 1.82 16 15 N -0.91 -51.60 11.29 21.45 0.24 -51.35 16 16 Si 0.95 45.22 29.54 68.60 2.03 47.24 16 17 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 20 C -0.05 -1.87 5.81 36.51 0.21 -1.66 16 21 N 0.05 2.08 3.01 -46.16 -0.14 1.94 16 22 O -0.19 -9.50 18.87 18.89 0.36 -9.14 16 23 O -0.15 -6.16 19.25 18.89 0.36 -5.80 16 24 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.19 7.32 -2.39 -0.02 1.17 16 26 H 0.12 1.90 8.08 -2.39 -0.02 1.88 16 27 H 0.19 2.29 8.06 -2.92 -0.02 2.26 16 28 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.13 4.44 7.07 -2.91 -0.02 4.42 16 30 H 0.04 1.29 7.42 -2.38 -0.02 1.28 16 31 H 0.08 2.76 6.26 -2.38 -0.01 2.74 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.04 1.61 6.67 -2.39 -0.02 1.59 16 34 H 0.07 3.85 5.93 -2.39 -0.01 3.83 16 35 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -69.03 305.19 4.98 -64.05 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.09 Total: 6.11 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.07 Total: -25.96 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -2.93 Total: -76.50 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.72 Total: -14.94 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -69.03 4.98 -64.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235421971.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.311 kcal (2) G-P(sol) polarization free energy of solvation -69.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds