Wall clock time and date at job start Mon Mar 30 2020 07:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38038 * 120.04633 * 2 1 4 4 C 1.38341 * 120.08937 * 180.25827 * 3 2 1 5 5 C 1.50704 * 119.90983 * 179.74715 * 4 3 2 6 6 C 1.53000 * 109.46897 * 240.02268 * 5 4 3 7 7 C 1.53005 * 109.46626 * 0.02562 * 5 4 3 8 8 C 1.52993 * 109.47345 * 120.01939 * 5 4 3 9 9 C 1.38346 * 120.18737 * 359.76648 * 4 3 2 10 10 C 1.38036 * 120.08665 * 359.95767 * 9 4 3 11 11 C 1.50707 * 120.04312 * 179.97438 * 10 9 4 12 12 C 1.39109 * 120.04376 * 179.73058 * 2 1 3 13 13 S 1.76197 * 120.09521 * 359.97438 * 12 2 1 14 14 C 1.76199 * 100.00148 * 269.72936 * 13 12 2 15 15 H 1.07999 * 119.99976 * 0.02562 * 14 13 12 16 16 C 1.38731 * 119.99798 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99788 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99607 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47035 * 60.00438 * 18 16 14 20 20 H 1.48503 * 109.46845 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47295 * 299.99838 * 18 16 14 22 22 H 1.09004 * 109.47128 * 270.27047 * 1 2 3 23 23 H 1.08994 * 109.47408 * 30.27075 * 1 2 3 24 24 H 1.09000 * 109.47435 * 150.27919 * 1 2 3 25 25 H 1.07995 * 119.95166 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.46860 * 59.99970 * 6 5 4 27 27 H 1.09000 * 109.46874 * 179.97438 * 6 5 4 28 28 H 1.08995 * 109.47128 * 299.99731 * 6 5 4 29 29 H 1.08995 * 109.46820 * 60.00482 * 7 5 4 30 30 H 1.09000 * 109.46548 * 180.02562 * 7 5 4 31 31 H 1.08997 * 109.47350 * 300.00267 * 7 5 4 32 32 H 1.09005 * 109.47052 * 60.00261 * 8 5 4 33 33 H 1.09000 * 109.47185 * 179.97438 * 8 5 4 34 34 H 1.09000 * 109.47162 * 300.00067 * 8 5 4 35 35 H 1.07999 * 119.95816 * 179.97438 * 9 4 3 36 36 H 1.09003 * 109.46803 * 270.01571 * 11 10 9 37 37 H 1.08992 * 109.46995 * 30.01977 * 11 10 9 38 38 H 1.08995 * 109.47048 * 150.02344 * 11 10 9 39 39 H 0.97005 * 119.99666 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1949 0.0000 4 6 3.5815 1.1959 -0.0054 5 6 4.3320 2.5028 -0.0111 6 6 5.2061 2.5834 -1.2643 7 6 3.3349 3.6634 -0.0091 8 6 5.2166 2.5884 1.2342 9 6 4.2781 0.0006 -0.0059 10 6 3.5945 -1.1986 -0.0002 11 6 4.3543 -2.5001 -0.0014 12 6 2.2034 -1.2042 0.0057 13 16 1.3261 -2.7322 0.0135 14 6 1.1816 -2.9931 1.7501 15 1 1.5962 -2.2737 2.4406 16 6 0.5341 -4.1222 2.2303 17 7 0.0284 -4.9987 1.3887 18 14 0.3815 -4.3991 4.0714 19 1 -0.3660 -3.2703 4.6814 20 1 -0.3479 -5.6681 4.3222 21 1 1.7364 -4.4789 4.6740 22 1 -0.3633 0.0049 1.0277 23 1 -0.3634 0.8875 -0.5180 24 1 -0.3634 -0.8925 -0.5095 25 1 1.6581 2.1301 0.0004 26 1 4.5757 2.5224 -2.1515 27 1 5.7485 3.5288 -1.2687 28 1 5.9163 1.7566 -1.2656 29 1 2.7123 3.6058 0.8837 30 1 3.8777 4.6086 -0.0137 31 1 2.7045 3.6024 -0.8962 32 1 5.9269 1.7616 1.2328 33 1 5.7597 3.5335 1.2298 34 1 4.5939 2.5310 2.1269 35 1 5.3580 0.0058 -0.0106 36 1 4.5326 -2.8158 -1.0294 37 1 5.3084 -2.3643 0.5078 38 1 3.7712 -3.2617 0.5164 39 1 -0.4240 -5.7884 1.7245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259045951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:50 Heat of formation + Delta-G solvation = -11.027189 kcal Electronic energy + Delta-G solvation = -17934.358656 eV Core-core repulsion = 15352.667062 eV Total energy + Delta-G solvation = -2581.691594 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 264.124 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.49574 -36.33501 -32.96382 -32.46435 -30.28603 -27.93307 -27.21367 -26.55681 -25.50659 -25.45629 -22.46233 -19.94823 -18.61187 -17.65335 -16.24683 -15.27469 -14.88783 -14.80762 -14.23444 -13.72464 -13.40653 -13.26930 -12.99772 -12.58181 -12.46856 -12.34972 -12.23508 -11.85568 -11.67090 -11.60686 -11.39886 -11.19149 -11.11413 -11.04739 -10.85684 -10.84677 -10.59181 -10.39487 -10.20172 -9.75495 -9.06994 -8.72103 -7.92595 -7.63494 -6.51502 -6.23849 -3.94190 1.82519 2.01322 3.22767 3.23331 3.27327 3.60546 4.14240 4.31515 4.74675 4.86004 5.06445 5.11372 5.39589 5.46753 5.49001 5.55408 5.58796 5.62390 5.77802 5.78249 5.88116 5.88630 5.95898 6.02060 6.07624 6.15403 6.21962 6.31949 6.33038 6.34806 6.40453 6.49393 6.55020 6.80450 7.01339 7.08256 7.16951 7.35071 7.60513 7.62019 8.37920 9.21623 10.82284 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.005531 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.939645 B = 5060.735376 C = 5112.765289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.043 4.043 3 C -0.144 4.144 4 C -0.067 4.067 5 C -0.027 4.027 6 C -0.136 4.136 7 C -0.141 4.141 8 C -0.137 4.137 9 C -0.138 4.138 10 C -0.042 4.042 11 C -0.118 4.118 12 C -0.111 4.111 13 S -0.036 6.036 14 C -0.513 4.513 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.872 5.872 18 Si 0.916 3.084 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 H 0.068 0.932 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.117 0.883 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.501 13.115 -2.897 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.046 4.046 3 C -0.164 4.164 4 C -0.067 4.067 5 C -0.027 4.027 6 C -0.193 4.193 7 C -0.199 4.199 8 C -0.194 4.194 9 C -0.158 4.158 10 C -0.045 4.045 11 C -0.175 4.175 12 C -0.222 4.222 13 S 0.199 5.801 14 C -0.660 4.660 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.508 5.508 18 Si 0.743 3.257 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.199 1.199 22 H 0.087 0.913 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.135 0.865 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.990 12.226 -3.789 14.584 hybrid contribution 0.377 0.661 2.198 2.326 sum 7.367 12.886 -1.592 14.929 Atomic orbital electron populations 1.20903 0.91070 1.02645 1.02597 1.20289 0.96261 0.92191 0.95853 1.20902 0.93448 0.97256 1.04750 1.19647 0.93386 0.93670 1.00031 1.19446 0.94981 0.92510 0.95778 1.21868 0.99207 1.01323 0.96918 1.21938 0.98883 0.96945 1.02092 1.21872 0.99167 1.01303 0.97048 1.20682 0.98738 0.91601 1.04761 1.20263 0.93333 0.95044 0.95859 1.20945 0.98810 0.95678 1.02096 1.22553 0.95624 1.00261 1.03724 1.83306 1.69343 1.16034 1.11449 1.22746 1.42574 1.10456 0.90258 0.90978 1.24954 0.94724 0.94959 0.98898 1.69981 1.35426 1.10993 1.34398 0.86247 0.78529 0.77662 0.83293 1.19957 1.20812 1.19917 0.91293 0.93128 0.89267 0.86485 0.92579 0.92813 0.92471 0.92313 0.92856 0.92321 0.92476 0.92809 0.92558 0.87093 0.91650 0.93092 0.88589 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 9.57 36.00 0.34 -1.81 16 2 C -0.04 -0.86 5.90 -104.37 -0.62 -1.48 16 3 C -0.14 -2.47 8.62 -39.62 -0.34 -2.82 16 4 C -0.07 -1.07 4.77 -104.54 -0.50 -1.57 16 5 C -0.03 -0.33 0.85 -155.66 -0.13 -0.47 16 6 C -0.14 -1.50 8.29 37.16 0.31 -1.19 16 7 C -0.14 -1.55 7.13 37.16 0.26 -1.29 16 8 C -0.14 -1.57 8.29 37.15 0.31 -1.26 16 9 C -0.14 -2.37 8.35 -39.62 -0.33 -2.70 16 10 C -0.04 -0.85 5.90 -104.37 -0.62 -1.46 16 11 C -0.12 -2.21 9.58 36.01 0.34 -1.87 16 12 C -0.11 -2.47 5.45 -38.93 -0.21 -2.68 16 13 S -0.04 -0.94 17.84 -107.50 -1.92 -2.85 16 14 C -0.51 -14.35 9.44 30.91 0.29 -14.06 16 15 H 0.07 2.04 7.79 -52.49 -0.41 1.63 16 16 C 0.07 2.03 5.49 -17.46 -0.10 1.94 16 17 N -0.87 -25.26 13.22 55.49 0.73 -24.52 16 18 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 23 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 24 H 0.09 1.81 6.79 -51.93 -0.35 1.46 16 25 H 0.12 1.73 5.88 -52.49 -0.31 1.43 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.63 7.38 -51.93 -0.38 0.25 16 29 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 32 H 0.06 0.66 7.38 -51.93 -0.38 0.28 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.11 1.65 7.09 -52.49 -0.37 1.28 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.10 2.09 6.76 -51.93 -0.35 1.74 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -29.50 325.14 -8.56 -38.07 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.27 Total: 0.75 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: -0.98 Total: -32.70 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.73 Total: -24.52 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -1.92 Total: -2.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.50 -8.56 -38.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259045951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.041 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds