Wall clock time and date at job start Mon Mar 30 2020 07:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38038 * 120.04633 * 2 1 4 4 C 1.38341 * 120.08937 * 180.25827 * 3 2 1 5 5 C 1.50704 * 119.90983 * 179.74715 * 4 3 2 6 6 C 1.53000 * 109.46897 * 240.02268 * 5 4 3 7 7 C 1.53005 * 109.46626 * 0.02562 * 5 4 3 8 8 C 1.52993 * 109.47345 * 120.01939 * 5 4 3 9 9 C 1.38346 * 120.18737 * 359.76648 * 4 3 2 10 10 C 1.38036 * 120.08665 * 359.95767 * 9 4 3 11 11 C 1.50707 * 120.04312 * 179.97438 * 10 9 4 12 12 C 1.39109 * 120.04376 * 179.73058 * 2 1 3 13 13 S 1.76197 * 120.09521 * 359.97438 * 12 2 1 14 14 C 1.76199 * 100.00148 * 269.72936 * 13 12 2 15 15 H 1.07999 * 119.99976 * 0.02562 * 14 13 12 16 16 C 1.38731 * 119.99798 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99788 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99607 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47035 * 60.00438 * 18 16 14 20 20 H 1.48503 * 109.46845 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47295 * 299.99838 * 18 16 14 22 22 H 1.09004 * 109.47128 * 270.27047 * 1 2 3 23 23 H 1.08994 * 109.47408 * 30.27075 * 1 2 3 24 24 H 1.09000 * 109.47435 * 150.27919 * 1 2 3 25 25 H 1.07995 * 119.95166 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.46860 * 59.99970 * 6 5 4 27 27 H 1.09000 * 109.46874 * 179.97438 * 6 5 4 28 28 H 1.08995 * 109.47128 * 299.99731 * 6 5 4 29 29 H 1.08995 * 109.46820 * 60.00482 * 7 5 4 30 30 H 1.09000 * 109.46548 * 180.02562 * 7 5 4 31 31 H 1.08997 * 109.47350 * 300.00267 * 7 5 4 32 32 H 1.09005 * 109.47052 * 60.00261 * 8 5 4 33 33 H 1.09000 * 109.47185 * 179.97438 * 8 5 4 34 34 H 1.09000 * 109.47162 * 300.00067 * 8 5 4 35 35 H 1.07999 * 119.95816 * 179.97438 * 9 4 3 36 36 H 1.09003 * 109.46803 * 270.01571 * 11 10 9 37 37 H 1.08992 * 109.46995 * 30.01977 * 11 10 9 38 38 H 1.08995 * 109.47048 * 150.02344 * 11 10 9 39 39 H 0.97005 * 119.99666 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1949 0.0000 4 6 3.5815 1.1959 -0.0054 5 6 4.3320 2.5028 -0.0111 6 6 5.2061 2.5834 -1.2643 7 6 3.3349 3.6634 -0.0091 8 6 5.2166 2.5884 1.2342 9 6 4.2781 0.0006 -0.0059 10 6 3.5945 -1.1986 -0.0002 11 6 4.3543 -2.5001 -0.0014 12 6 2.2034 -1.2042 0.0057 13 16 1.3261 -2.7322 0.0135 14 6 1.1816 -2.9931 1.7501 15 1 1.5962 -2.2737 2.4406 16 6 0.5341 -4.1222 2.2303 17 7 0.0284 -4.9987 1.3887 18 14 0.3815 -4.3991 4.0714 19 1 -0.3660 -3.2703 4.6814 20 1 -0.3479 -5.6681 4.3222 21 1 1.7364 -4.4789 4.6740 22 1 -0.3633 0.0049 1.0277 23 1 -0.3634 0.8875 -0.5180 24 1 -0.3634 -0.8925 -0.5095 25 1 1.6581 2.1301 0.0004 26 1 4.5757 2.5224 -2.1515 27 1 5.7485 3.5288 -1.2687 28 1 5.9163 1.7566 -1.2656 29 1 2.7123 3.6058 0.8837 30 1 3.8777 4.6086 -0.0137 31 1 2.7045 3.6024 -0.8962 32 1 5.9269 1.7616 1.2328 33 1 5.7597 3.5335 1.2298 34 1 4.5939 2.5310 2.1269 35 1 5.3580 0.0058 -0.0106 36 1 4.5326 -2.8158 -1.0294 37 1 5.3084 -2.3643 0.5078 38 1 3.7712 -3.2617 0.5164 39 1 -0.4240 -5.7884 1.7245 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259045951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:49 Heat of formation + Delta-G solvation = -24.960858 kcal Electronic energy + Delta-G solvation = -17934.962865 eV Core-core repulsion = 15352.667062 eV Total energy + Delta-G solvation = -2582.295803 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 264.124 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80630 -37.49288 -34.60357 -34.43981 -31.61534 -28.95777 -28.12266 -28.06174 -27.63676 -26.72325 -23.76157 -21.40545 -20.04449 -19.37590 -17.72452 -16.89092 -16.68863 -16.15959 -15.31516 -15.11912 -14.77457 -14.59833 -14.48394 -13.96065 -13.85377 -13.76669 -13.27173 -13.20875 -13.07635 -13.03595 -12.88045 -12.67044 -12.57935 -12.53111 -12.29786 -12.11145 -11.90021 -11.71770 -11.40133 -11.36388 -11.12812 -10.53973 -9.37483 -9.25989 -8.56925 -8.33018 -6.08103 0.33503 0.55536 1.31506 1.37554 1.44962 1.82376 2.29102 2.77499 2.97916 3.51198 3.68660 3.83552 4.06223 4.15997 4.18436 4.37432 4.42807 4.59583 4.68433 4.70455 4.81709 4.82521 4.84026 4.87465 4.93466 4.97808 5.02406 5.06282 5.08564 5.18934 5.24410 5.37574 5.39070 5.41699 5.48424 5.50013 5.69980 5.75474 5.84668 6.18795 6.20759 7.06403 8.72222 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.026286 B = 0.005531 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.939645 B = 5060.735376 C = 5112.765289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.061 4.061 3 C -0.144 4.144 4 C -0.055 4.055 5 C -0.027 4.027 6 C -0.135 4.135 7 C -0.142 4.142 8 C -0.136 4.136 9 C -0.136 4.136 10 C -0.060 4.060 11 C -0.113 4.113 12 C -0.143 4.143 13 S -0.080 6.080 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.023 3.977 17 N -0.906 5.906 18 Si 0.983 3.017 19 H -0.268 1.268 20 H -0.272 1.272 21 H -0.268 1.268 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.144 0.856 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.138 0.862 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.122 15.828 -2.348 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.063 4.063 3 C -0.163 4.163 4 C -0.055 4.055 5 C -0.027 4.027 6 C -0.192 4.192 7 C -0.199 4.199 8 C -0.193 4.193 9 C -0.156 4.156 10 C -0.062 4.062 11 C -0.170 4.170 12 C -0.254 4.254 13 S 0.155 5.845 14 C -0.672 4.672 15 H 0.076 0.924 16 C -0.182 4.182 17 N -0.543 5.543 18 Si 0.806 3.194 19 H -0.193 1.193 20 H -0.196 1.196 21 H -0.193 1.193 22 H 0.076 0.924 23 H 0.104 0.896 24 H 0.082 0.918 25 H 0.162 0.838 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.156 0.844 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.614 14.944 -3.251 17.552 hybrid contribution -0.036 -0.046 1.957 1.958 sum 8.578 14.898 -1.294 17.239 Atomic orbital electron populations 1.20834 0.90786 1.03080 1.02007 1.20505 0.96864 0.92569 0.96395 1.21203 0.94259 0.97056 1.03775 1.20168 0.93243 0.95257 0.96821 1.19562 0.95358 0.90722 0.97068 1.21864 0.98954 1.02671 0.95679 1.21951 0.98749 0.97345 1.01886 1.21877 0.98907 1.02679 0.95875 1.20946 1.00069 0.90807 1.03733 1.20479 0.92715 0.96655 0.96398 1.20863 0.99225 0.94327 1.02546 1.22428 0.96518 0.98765 1.07659 1.83166 1.70777 1.19764 1.10780 1.22898 1.42576 1.10480 0.91291 0.92382 1.25857 0.94162 0.94483 1.03678 1.70095 1.36173 1.11517 1.36494 0.85224 0.78775 0.77979 0.77446 1.19340 1.19637 1.19277 0.92359 0.89643 0.91783 0.83795 0.93121 0.90421 0.92560 0.92774 0.90569 0.92290 0.92632 0.90318 0.93662 0.84408 0.90650 0.90404 0.92374 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.18 9.57 71.23 0.68 -3.50 16 2 C -0.06 -2.44 5.90 -19.70 -0.12 -2.56 16 3 C -0.14 -4.67 8.62 22.25 0.19 -4.48 16 4 C -0.05 -1.61 4.77 -19.81 -0.09 -1.70 16 5 C -0.03 -0.57 0.85 -52.93 -0.05 -0.61 16 6 C -0.13 -2.42 8.29 71.98 0.60 -1.82 16 7 C -0.14 -2.55 7.13 71.98 0.51 -2.04 16 8 C -0.14 -2.61 8.29 71.98 0.60 -2.01 16 9 C -0.14 -4.41 8.35 22.25 0.19 -4.22 16 10 C -0.06 -2.40 5.90 -19.70 -0.12 -2.52 16 11 C -0.11 -4.26 9.58 71.24 0.68 -3.58 16 12 C -0.14 -6.52 5.45 22.69 0.12 -6.40 16 13 S -0.08 -4.35 17.84 -56.49 -1.01 -5.36 16 14 C -0.53 -30.62 9.44 67.94 0.64 -29.98 16 15 H 0.06 3.43 7.79 -2.91 -0.02 3.40 16 16 C 0.02 1.33 5.49 84.84 0.47 1.80 16 17 N -0.91 -54.13 13.22 21.64 0.29 -53.85 16 18 Si 0.98 44.57 29.55 68.60 2.03 46.59 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.08 2.54 8.09 -2.39 -0.02 2.52 16 24 H 0.06 2.73 6.79 -2.39 -0.02 2.72 16 25 H 0.14 3.85 5.88 -2.91 -0.02 3.83 16 26 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.02 7.38 -2.39 -0.02 1.01 16 29 H 0.05 1.03 7.51 -2.39 -0.02 1.01 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.06 7.51 -2.39 -0.02 1.04 16 32 H 0.05 1.08 7.38 -2.38 -0.02 1.06 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.14 3.68 7.09 -2.91 -0.02 3.65 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.08 2.44 8.09 -2.39 -0.02 2.42 16 38 H 0.06 2.65 6.76 -2.39 -0.02 2.63 16 39 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -66.42 325.14 6.62 -59.80 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 1.01 Total: 16.43 kcal Atomic # 6 Polarization: -67.93 SS G_CDS: 4.31 Total: -63.62 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.29 Total: -53.85 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -1.01 Total: -5.36 kcal Total: -66.42 6.62 -59.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259045951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.839 kcal (2) G-P(sol) polarization free energy of solvation -66.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds