Wall clock time and date at job start Mon Mar 30 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32347 * 126.07415 * 2 1 4 4 C 1.33234 * 109.96968 * 179.97438 * 3 2 1 5 5 S 1.76384 * 141.35084 * 179.97438 * 4 3 2 6 6 C 1.75762 * 90.70953 * 179.97438 * 5 4 3 7 7 C 1.50704 * 125.10720 * 179.97438 * 6 5 4 8 8 C 1.31089 * 109.79035 * 0.02562 * 6 5 4 9 9 C 1.50700 * 121.84631 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47412 * 306.20710 * 9 8 6 11 11 C 1.53001 * 109.47144 * 66.20963 * 9 8 6 12 12 N 1.35166 * 109.53352 * 359.97438 * 4 3 2 13 13 C 1.39439 * 126.07225 * 179.97438 * 2 1 3 14 14 C 1.39891 * 126.92177 * 359.97317 * 13 2 1 15 15 H 1.08003 * 120.00104 * 128.73764 * 14 13 2 16 16 C 1.39822 * 120.00176 * 308.73384 * 14 13 2 17 17 N 1.31076 * 120.00281 * 161.88620 * 16 14 13 18 18 Si 1.86802 * 119.99488 * 341.88721 * 16 14 13 19 19 H 1.48493 * 109.47175 * 95.10180 * 18 16 14 20 20 H 1.48500 * 109.46842 * 215.09908 * 18 16 14 21 21 H 1.48495 * 109.47278 * 335.09524 * 18 16 14 22 22 H 1.08998 * 109.47186 * 82.79883 * 1 2 3 23 23 H 1.09001 * 109.47358 * 202.79884 * 1 2 3 24 24 H 1.08993 * 109.47135 * 322.79929 * 1 2 3 25 25 H 1.09000 * 109.46792 * 4.31689 * 7 6 5 26 26 H 1.08997 * 109.46880 * 124.31781 * 7 6 5 27 27 H 1.09000 * 109.46844 * 244.31989 * 7 6 5 28 28 H 1.09008 * 109.46641 * 186.20858 * 9 8 6 29 29 H 1.09005 * 109.47106 * 318.59095 * 10 9 8 30 30 H 1.08996 * 109.46822 * 78.58657 * 10 9 8 31 31 H 1.09000 * 109.47280 * 198.59050 * 10 9 8 32 32 H 1.09002 * 109.46966 * 59.30591 * 11 9 8 33 33 H 1.09002 * 109.46756 * 179.29949 * 11 9 8 34 34 H 1.08992 * 109.47224 * 299.30624 * 11 9 8 35 35 H 0.97001 * 120.00445 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2863 1.0697 0.0000 4 6 3.5664 0.7001 0.0006 5 16 5.1954 1.3764 0.0005 6 6 5.8893 -0.2384 0.0025 7 6 7.3642 -0.5480 0.0029 8 6 4.9313 -1.1332 0.0026 9 6 5.2240 -2.6115 0.0048 10 6 6.1602 -2.9479 -1.1577 11 6 5.8923 -2.9972 1.3259 12 7 3.6472 -0.6491 0.0015 13 6 2.3280 -1.1270 0.0005 14 6 1.9189 -2.4648 0.0016 15 1 2.3203 -3.1529 -0.7276 16 6 0.9902 -2.9111 0.9469 17 7 0.3409 -4.0324 0.7491 18 14 0.6749 -1.9092 2.4916 19 1 -0.5007 -1.0275 2.2784 20 1 0.4070 -2.8250 3.6294 21 1 1.8680 -1.0787 2.7951 22 1 -0.3633 0.1288 -1.0195 23 1 -0.3634 -0.9474 0.3982 24 1 -0.3633 0.8185 0.6213 25 1 7.9303 0.3804 0.0791 26 1 7.6008 -1.1885 0.8525 27 1 7.6283 -1.0597 -0.9226 28 1 4.2924 -3.1665 -0.1067 29 1 5.8529 -2.3927 -2.0440 30 1 7.1812 -2.6734 -0.8929 31 1 6.1133 -4.0171 -1.3643 32 1 5.2304 -2.7463 2.1548 33 1 6.0927 -4.0686 1.3325 34 1 6.8299 -2.4514 1.4317 35 1 -0.3036 -4.3419 1.4046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259342636.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:50 Heat of formation + Delta-G solvation = 72.719391 kcal Electronic energy + Delta-G solvation = -18513.188800 eV Core-core repulsion = 15831.588387 eV Total energy + Delta-G solvation = -2681.600413 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.24987 -37.62161 -33.99560 -33.17294 -31.38392 -30.23226 -28.34049 -26.98491 -25.87617 -24.36213 -22.41870 -20.59359 -18.99589 -18.32929 -18.17965 -16.53888 -15.26762 -15.03887 -14.63679 -14.05206 -13.64654 -13.55637 -13.19717 -13.07768 -12.99800 -12.40877 -12.24310 -12.07602 -11.85664 -11.67771 -11.53741 -11.34941 -10.95453 -10.89897 -10.74676 -10.44122 -10.16577 -9.96468 -9.87366 -9.39984 -9.02800 -8.89972 -7.48275 -6.91631 -6.62778 -4.55156 1.78247 1.91020 2.47609 2.97999 3.12977 3.25429 3.37594 3.67228 3.92199 3.99863 4.76576 4.95966 5.20246 5.38840 5.41345 5.47251 5.55482 5.73463 5.81968 5.86747 6.02033 6.08746 6.10276 6.11540 6.30721 6.37339 6.49879 6.57897 6.59346 6.76321 6.87762 7.09173 7.30726 7.69283 7.92589 8.20558 8.44600 8.69226 9.08725 10.13371 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.009820 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.226038 B = 2850.705219 C = 3695.608390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.072 4.072 3 N -0.437 5.437 4 C 0.056 3.944 5 S 0.095 5.905 6 C -0.231 4.231 7 C -0.070 4.070 8 C 0.129 3.871 9 C -0.049 4.049 10 C -0.145 4.145 11 C -0.143 4.143 12 N -0.421 5.421 13 C 0.187 3.813 14 C -0.464 4.464 15 H 0.093 0.907 16 C 0.107 3.893 17 N -0.818 5.818 18 Si 0.885 3.115 19 H -0.252 1.252 20 H -0.284 1.284 21 H -0.258 1.258 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.156 1.201 0.460 10.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.205 4.205 3 N -0.159 5.159 4 C -0.303 4.303 5 S 0.344 5.656 6 C -0.350 4.350 7 C -0.128 4.128 8 C 0.018 3.982 9 C -0.071 4.071 10 C -0.203 4.203 11 C -0.200 4.200 12 N -0.103 5.103 13 C 0.077 3.923 14 C -0.499 4.499 15 H 0.111 0.889 16 C -0.111 4.111 17 N -0.445 5.445 18 Si 0.709 3.291 19 H -0.177 1.177 20 H -0.210 1.210 21 H -0.182 1.182 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.215 3.123 0.504 10.693 hybrid contribution -0.588 -1.692 0.667 1.911 sum 9.626 1.431 1.170 9.802 Atomic orbital electron populations 1.19949 0.88229 1.01424 1.00963 1.20902 0.95124 0.87206 1.17252 1.69510 0.96777 1.31509 1.18135 1.24998 0.98360 0.84302 1.22682 1.83719 0.90325 1.04818 1.86779 1.23040 0.99149 0.94814 1.18028 1.20445 0.87750 1.01763 1.02845 1.18850 0.82179 0.96548 1.00660 1.20104 1.01692 0.89035 0.96222 1.21981 0.99280 1.01470 0.97540 1.21874 1.00561 1.01160 0.96431 1.44493 1.05217 1.07256 1.53375 1.19212 0.77677 0.95166 1.00221 1.17856 1.23270 0.92386 1.16431 0.88920 1.25617 0.92499 0.94581 0.98412 1.69718 1.19416 1.20651 1.34744 0.86810 0.81368 0.80154 0.80727 1.17704 1.21026 1.18206 0.92658 0.91125 0.93027 0.91797 0.90498 0.90440 0.87496 0.92571 0.91721 0.92133 0.92483 0.91969 0.92056 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.08 8.95 36.01 0.32 -0.76 16 2 C -0.07 -1.87 6.06 -81.92 -0.50 -2.37 16 3 N -0.44 -11.41 11.24 -8.68 -0.10 -11.51 16 4 C 0.06 1.38 8.92 -87.93 -0.78 0.60 16 5 S 0.10 1.82 23.36 -107.50 -2.51 -0.69 16 6 C -0.23 -4.01 6.15 -36.05 -0.22 -4.23 16 7 C -0.07 -0.85 8.46 36.01 0.30 -0.55 16 8 C 0.13 2.58 5.57 -81.92 -0.46 2.13 16 9 C -0.05 -0.85 3.10 -91.77 -0.28 -1.14 16 10 C -0.15 -1.98 8.28 37.16 0.31 -1.68 16 11 C -0.14 -2.10 8.94 37.16 0.33 -1.77 16 12 N -0.42 -10.23 3.22 -56.81 -0.18 -10.41 16 13 C 0.19 4.88 5.53 -82.91 -0.46 4.42 16 14 C -0.46 -12.23 8.30 -38.37 -0.32 -12.55 16 15 H 0.09 2.55 7.37 -52.48 -0.39 2.17 16 16 C 0.11 2.74 4.68 -17.28 -0.08 2.66 16 17 N -0.82 -21.18 13.94 55.55 0.77 -20.40 16 18 Si 0.88 20.77 24.57 -169.99 -4.18 16.59 16 19 H -0.25 -5.63 6.07 56.52 0.34 -5.29 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.26 -6.59 7.11 56.52 0.40 -6.19 16 22 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.07 1.62 4.22 -51.93 -0.22 1.40 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.85 5.40 -51.93 -0.28 0.57 16 27 H 0.08 0.84 5.92 -51.93 -0.31 0.53 16 28 H 0.11 2.19 5.83 -51.92 -0.30 1.88 16 29 H 0.06 0.82 8.00 -51.93 -0.42 0.41 16 30 H 0.06 0.72 5.31 -51.93 -0.28 0.44 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.76 5.06 -51.93 -0.26 0.50 16 35 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 LS Contribution 283.81 15.07 4.28 4.28 Total: -1.00 -29.73 283.81 -7.93 -37.66 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.18 Total: -0.29 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -1.83 Total: -15.23 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.49 Total: -42.32 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.18 Total: 16.59 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.51 Total: -0.69 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.73 -7.93 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259342636.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.378 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds