Wall clock time and date at job start Mon Mar 30 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32347 * 126.07415 * 2 1 4 4 C 1.33234 * 109.96968 * 179.97438 * 3 2 1 5 5 S 1.76384 * 141.35084 * 179.97438 * 4 3 2 6 6 C 1.75762 * 90.70953 * 179.97438 * 5 4 3 7 7 C 1.50704 * 125.10720 * 179.97438 * 6 5 4 8 8 C 1.31089 * 109.79035 * 0.02562 * 6 5 4 9 9 C 1.50700 * 121.84631 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47412 * 306.20710 * 9 8 6 11 11 C 1.53001 * 109.47144 * 66.20963 * 9 8 6 12 12 N 1.35166 * 109.53352 * 359.97438 * 4 3 2 13 13 C 1.39439 * 126.07225 * 179.97438 * 2 1 3 14 14 C 1.39891 * 126.92177 * 359.97317 * 13 2 1 15 15 H 1.08003 * 120.00104 * 128.73764 * 14 13 2 16 16 C 1.39822 * 120.00176 * 308.73384 * 14 13 2 17 17 N 1.31076 * 120.00281 * 161.88620 * 16 14 13 18 18 Si 1.86802 * 119.99488 * 341.88721 * 16 14 13 19 19 H 1.48493 * 109.47175 * 95.10180 * 18 16 14 20 20 H 1.48500 * 109.46842 * 215.09908 * 18 16 14 21 21 H 1.48495 * 109.47278 * 335.09524 * 18 16 14 22 22 H 1.08998 * 109.47186 * 82.79883 * 1 2 3 23 23 H 1.09001 * 109.47358 * 202.79884 * 1 2 3 24 24 H 1.08993 * 109.47135 * 322.79929 * 1 2 3 25 25 H 1.09000 * 109.46792 * 4.31689 * 7 6 5 26 26 H 1.08997 * 109.46880 * 124.31781 * 7 6 5 27 27 H 1.09000 * 109.46844 * 244.31989 * 7 6 5 28 28 H 1.09008 * 109.46641 * 186.20858 * 9 8 6 29 29 H 1.09005 * 109.47106 * 318.59095 * 10 9 8 30 30 H 1.08996 * 109.46822 * 78.58657 * 10 9 8 31 31 H 1.09000 * 109.47280 * 198.59050 * 10 9 8 32 32 H 1.09002 * 109.46966 * 59.30591 * 11 9 8 33 33 H 1.09002 * 109.46756 * 179.29949 * 11 9 8 34 34 H 1.08992 * 109.47224 * 299.30624 * 11 9 8 35 35 H 0.97001 * 120.00445 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2863 1.0697 0.0000 4 6 3.5664 0.7001 0.0006 5 16 5.1954 1.3764 0.0005 6 6 5.8893 -0.2384 0.0025 7 6 7.3642 -0.5480 0.0029 8 6 4.9313 -1.1332 0.0026 9 6 5.2240 -2.6115 0.0048 10 6 6.1602 -2.9479 -1.1577 11 6 5.8923 -2.9972 1.3259 12 7 3.6472 -0.6491 0.0015 13 6 2.3280 -1.1270 0.0005 14 6 1.9189 -2.4648 0.0016 15 1 2.3203 -3.1529 -0.7276 16 6 0.9902 -2.9111 0.9469 17 7 0.3409 -4.0324 0.7491 18 14 0.6749 -1.9092 2.4916 19 1 -0.5007 -1.0275 2.2784 20 1 0.4070 -2.8250 3.6294 21 1 1.8680 -1.0787 2.7951 22 1 -0.3633 0.1288 -1.0195 23 1 -0.3634 -0.9474 0.3982 24 1 -0.3633 0.8185 0.6213 25 1 7.9303 0.3804 0.0791 26 1 7.6008 -1.1885 0.8525 27 1 7.6283 -1.0597 -0.9226 28 1 4.2924 -3.1665 -0.1067 29 1 5.8529 -2.3927 -2.0440 30 1 7.1812 -2.6734 -0.8929 31 1 6.1133 -4.0171 -1.3643 32 1 5.2304 -2.7463 2.1548 33 1 6.0927 -4.0686 1.3325 34 1 6.8299 -2.4514 1.4317 35 1 -0.3036 -4.3419 1.4046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259342636.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:49 Heat of formation + Delta-G solvation = 55.078808 kcal Electronic energy + Delta-G solvation = -18513.953753 eV Core-core repulsion = 15831.588387 eV Total energy + Delta-G solvation = -2682.365366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.03729 -39.11758 -35.80888 -34.87191 -32.76728 -32.10558 -29.98183 -28.10982 -27.49788 -26.12892 -23.95230 -22.24952 -20.79001 -20.05654 -19.74789 -18.36816 -17.07336 -16.70397 -16.38968 -15.38093 -15.09869 -14.91922 -14.81049 -14.64399 -14.41702 -14.02651 -13.85456 -13.57595 -13.44206 -13.25273 -13.11353 -12.68085 -12.54838 -12.34959 -12.17926 -12.11525 -11.96718 -11.61025 -11.25601 -11.17377 -10.85784 -10.73658 -9.21025 -8.85553 -8.40028 -6.51870 0.16344 0.22765 0.88686 1.14068 1.21776 1.33967 1.57785 1.98087 2.00029 2.09557 2.83547 3.56432 3.87472 3.97978 4.19115 4.24441 4.26824 4.43113 4.55069 4.64177 4.75992 4.79510 4.80989 4.89230 4.94634 5.01699 5.03316 5.08122 5.17580 5.25028 5.33354 5.37756 5.60185 5.84748 6.10403 6.15696 6.56920 6.74081 7.18167 8.24115 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.009820 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.226038 B = 2850.705219 C = 3695.608390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.083 4.083 3 N -0.472 5.472 4 C 0.037 3.963 5 S 0.144 5.856 6 C -0.199 4.199 7 C -0.074 4.074 8 C 0.077 3.923 9 C -0.048 4.048 10 C -0.137 4.137 11 C -0.137 4.137 12 N -0.428 5.428 13 C 0.157 3.843 14 C -0.475 4.475 15 H 0.063 0.937 16 C 0.085 3.915 17 N -0.848 5.848 18 Si 0.926 3.074 19 H -0.234 1.234 20 H -0.266 1.266 21 H -0.292 1.292 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.982 1.959 0.891 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.215 4.215 3 N -0.196 5.196 4 C -0.323 4.323 5 S 0.393 5.607 6 C -0.318 4.318 7 C -0.132 4.132 8 C -0.032 4.032 9 C -0.070 4.070 10 C -0.194 4.194 11 C -0.195 4.195 12 N -0.110 5.110 13 C 0.045 3.955 14 C -0.511 4.511 15 H 0.081 0.919 16 C -0.130 4.130 17 N -0.477 5.477 18 Si 0.749 3.251 19 H -0.158 1.158 20 H -0.191 1.191 21 H -0.218 1.218 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.050 3.858 0.931 13.640 hybrid contribution -1.221 -1.775 0.476 2.207 sum 11.829 2.083 1.407 12.093 Atomic orbital electron populations 1.20012 0.86769 1.01589 1.02190 1.21428 0.96453 0.87289 1.16300 1.69523 0.97774 1.31741 1.20536 1.26128 1.00093 0.85387 1.20704 1.83542 0.86362 1.05362 1.85484 1.23850 1.01333 0.93219 1.13428 1.20766 0.83648 1.03862 1.04941 1.19473 0.81045 0.98637 1.04062 1.20130 1.00870 0.86881 0.99074 1.21963 1.00065 1.02081 0.95328 1.21877 1.00858 1.02935 0.93780 1.44634 1.06298 1.07423 1.52597 1.19221 0.78794 0.95082 1.02410 1.17653 1.24420 0.92328 1.16705 0.91903 1.25978 0.92255 0.95143 0.99609 1.69724 1.20479 1.21605 1.35908 0.86218 0.80317 0.79329 0.79193 1.15773 1.19092 1.21833 0.91237 0.91754 0.91538 0.89330 0.88311 0.88038 0.91987 0.94005 0.88131 0.91033 0.95422 0.89981 0.88937 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.19 8.95 71.24 0.64 -1.56 16 2 C -0.08 -4.37 6.06 42.77 0.26 -4.11 16 3 N -0.47 -24.99 11.24 -181.38 -2.04 -27.03 16 4 C 0.04 1.82 8.92 179.41 1.60 3.42 16 5 S 0.14 5.17 23.36 -56.49 -1.32 3.85 16 6 C -0.20 -6.33 6.15 25.56 0.16 -6.17 16 7 C -0.07 -1.40 8.46 71.24 0.60 -0.80 16 8 C 0.08 3.02 5.57 41.59 0.23 3.26 16 9 C -0.05 -1.64 3.10 -11.54 -0.04 -1.68 16 10 C -0.14 -3.42 8.28 71.98 0.60 -2.83 16 11 C -0.14 -3.79 8.94 71.98 0.64 -3.14 16 12 N -0.43 -21.19 3.22 -333.65 -1.07 -22.26 16 13 C 0.16 8.50 5.53 38.47 0.21 8.71 16 14 C -0.48 -26.47 8.30 23.05 0.19 -26.28 16 15 H 0.06 3.76 7.37 -2.91 -0.02 3.74 16 16 C 0.09 4.54 4.68 85.19 0.40 4.94 16 17 N -0.85 -45.29 13.94 21.82 0.30 -44.99 16 18 Si 0.93 43.65 24.57 68.60 1.69 45.34 16 19 H -0.23 -10.22 6.07 99.48 0.60 -9.62 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.29 -15.36 7.11 99.48 0.71 -14.65 16 22 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 23 H 0.06 3.00 4.22 -2.39 -0.01 2.99 16 24 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.10 1.56 5.40 -2.39 -0.01 1.54 16 27 H 0.10 1.57 5.92 -2.39 -0.01 1.56 16 28 H 0.06 2.68 5.83 -2.38 -0.01 2.66 16 29 H 0.04 1.15 8.00 -2.38 -0.02 1.14 16 30 H 0.10 1.74 5.31 -2.39 -0.01 1.72 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 1.90 5.06 -2.39 -0.01 1.89 16 35 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 Total: -1.00 -68.54 283.81 4.07 -64.47 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.02 Total: 6.85 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 5.49 Total: -26.23 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -2.81 Total: -94.28 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.69 Total: 45.34 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.32 Total: 3.85 kcal Total: -68.54 4.07 -64.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259342636.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.552 kcal (2) G-P(sol) polarization free energy of solvation -68.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds