Wall clock time and date at job start Mon Mar 30 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.75742 * 125.02895 * 2 1 4 4 C 1.76386 * 90.74196 * 179.97438 * 3 2 1 5 5 N 1.32283 * 141.21820 * 180.02562 * 4 3 2 6 6 C 1.35575 * 109.04112 * 179.97438 * 5 4 3 7 7 C 1.41158 * 126.31922 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99796 * 179.97438 * 7 6 5 9 9 C 1.39676 * 119.99606 * 359.97438 * 7 6 5 10 10 N 1.31028 * 120.00583 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99741 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47014 * 89.99676 * 11 9 7 13 13 H 1.48497 * 109.47236 * 210.00021 * 11 9 7 14 14 H 1.48500 * 109.46833 * 330.00264 * 11 9 7 15 15 C 1.38898 * 107.36016 * 0.02562 * 6 5 4 16 16 C 1.50697 * 126.64484 * 179.97438 * 15 6 5 17 17 C 1.52997 * 109.47466 * 60.02369 * 16 15 6 18 18 C 1.53006 * 109.47239 * 300.02081 * 16 15 6 19 19 N 1.35658 * 109.12449 * 0.23531 * 4 3 2 20 20 C 1.30816 * 125.02996 * 179.97438 * 2 1 3 21 21 C 1.50698 * 121.81665 * 0.03122 * 20 2 1 22 22 H 1.09002 * 109.47204 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47431 * 120.02036 * 1 2 3 24 24 H 1.08998 * 109.46946 * 240.02145 * 1 2 3 25 25 H 0.97004 * 120.00373 * 179.97438 * 10 9 7 26 26 H 1.08998 * 109.46862 * 180.02562 * 16 15 6 27 27 H 1.09002 * 109.47153 * 59.99773 * 17 16 15 28 28 H 1.09001 * 109.46832 * 299.99964 * 17 16 15 29 29 H 1.09004 * 109.47261 * 179.97438 * 17 16 15 30 30 H 1.09000 * 109.47050 * 300.00336 * 18 16 15 31 31 H 1.09001 * 109.47002 * 60.00070 * 18 16 15 32 32 H 1.08993 * 109.46955 * 180.02562 * 18 16 15 33 33 H 1.09000 * 109.47369 * 89.97652 * 21 20 2 34 34 H 1.08996 * 109.47106 * 209.98028 * 21 20 2 35 35 H 1.09005 * 109.47130 * 329.98329 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5157 1.4391 0.0000 4 6 3.9731 0.4454 0.0008 5 7 5.2918 0.5491 0.0016 6 6 5.8332 -0.6939 0.0024 7 6 7.2098 -1.0062 0.0039 8 1 7.5294 -2.0378 0.0048 9 6 8.1584 0.0190 0.0042 10 7 7.7707 1.2706 0.0036 11 14 9.9802 -0.3943 0.0069 12 1 10.4647 -0.5051 -1.3924 13 1 10.7303 0.6792 0.7070 14 1 10.1937 -1.6857 0.7084 15 6 4.7833 -1.6032 0.0014 16 6 4.8950 -3.1060 0.0012 17 6 5.6506 -3.5615 1.2512 18 6 5.6535 -3.5610 -1.2473 19 7 3.6182 -0.8639 -0.0043 20 6 2.2579 -1.0712 0.0005 21 6 1.6653 -2.4568 0.0004 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3634 -0.5141 -0.8898 24 1 -0.3633 -0.5135 0.8902 25 1 8.4295 1.9825 0.0042 26 1 3.8971 -3.5445 -0.0001 27 1 5.1102 -3.2375 2.1407 28 1 6.6485 -3.1230 1.2524 29 1 5.7310 -4.6486 1.2513 30 1 5.1152 -3.2365 -2.1378 31 1 6.6514 -3.1224 -1.2461 32 1 5.7339 -4.6479 -1.2476 33 1 1.5225 -2.7909 -1.0273 34 1 2.3407 -3.1408 0.5143 35 1 0.7040 -2.4409 0.5141 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259385085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:42 Heat of formation + Delta-G solvation = 68.598681 kcal Electronic energy + Delta-G solvation = -18197.312437 eV Core-core repulsion = 15515.533337 eV Total energy + Delta-G solvation = -2681.779101 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.97307 -36.50835 -34.58472 -33.27177 -31.13267 -29.05337 -27.82872 -26.82402 -26.34765 -23.91019 -21.72770 -20.95136 -19.40607 -18.14577 -16.95684 -16.26089 -15.12008 -15.06884 -14.40244 -13.75032 -13.54482 -13.27268 -13.20823 -12.89034 -12.63051 -12.43878 -12.24926 -12.07925 -11.81657 -11.45499 -11.21213 -11.16580 -10.73391 -10.53975 -10.46451 -10.25427 -10.12547 -10.05130 -9.64003 -9.14359 -9.01905 -8.22655 -7.39015 -6.42825 -6.39823 -4.19815 1.88160 1.98853 2.55957 3.08278 3.17850 3.20422 3.45258 3.81495 4.09916 4.38387 5.12626 5.33795 5.49546 5.57486 5.58558 5.60880 5.69750 5.74856 5.76966 5.95949 6.05256 6.12154 6.23512 6.30498 6.44481 6.55460 6.62077 6.67904 6.86294 7.07831 7.17290 7.28464 7.48099 7.80037 8.16372 8.47310 8.91017 9.05355 9.64522 10.52785 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.007633 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.187872 B = 3667.218080 C = 4674.035673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.255 4.255 3 S 0.110 5.890 4 C 0.121 3.879 5 N -0.418 5.418 6 C 0.239 3.761 7 C -0.438 4.438 8 H 0.090 0.910 9 C 0.072 3.928 10 N -0.759 5.759 11 Si 0.904 3.096 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.263 1.263 15 C -0.197 4.197 16 C 0.020 3.980 17 C -0.143 4.143 18 C -0.142 4.142 19 N -0.394 5.394 20 C 0.100 3.900 21 C -0.096 4.096 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.271 0.729 26 H 0.050 0.950 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.645 -5.706 0.021 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.376 4.376 3 S 0.359 5.641 4 C -0.244 4.244 5 N -0.145 5.145 6 C 0.115 3.885 7 C -0.472 4.472 8 H 0.108 0.892 9 C -0.148 4.148 10 N -0.383 5.383 11 Si 0.728 3.272 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.187 1.187 15 C -0.304 4.304 16 C 0.001 3.999 17 C -0.200 4.200 18 C -0.200 4.200 19 N -0.077 5.077 20 C -0.014 4.014 21 C -0.155 4.155 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.283 -3.406 0.018 9.888 hybrid contribution 0.709 -2.089 -0.021 2.206 sum -8.574 -5.495 -0.003 10.184 Atomic orbital electron populations 1.19996 0.87193 1.02269 1.01863 1.22839 0.99779 0.94538 1.20453 1.83897 0.90201 1.04839 1.85192 1.26073 0.98397 0.85322 1.14610 1.71742 0.97964 1.24708 1.20069 1.18143 0.92341 0.84462 0.93541 1.18645 0.87465 0.93901 1.47157 0.89235 1.25893 1.00733 0.94747 0.93450 1.70098 1.35087 0.99440 1.33692 0.86396 0.82655 0.79135 0.78968 1.19679 1.20431 1.18709 1.21000 0.81794 0.92752 1.34896 1.18945 0.97406 0.88770 0.94809 1.21868 1.02488 0.98513 0.97155 1.21865 1.02437 0.98504 0.97182 1.42979 1.03098 1.07994 1.53582 1.18702 0.82336 0.97111 1.03252 1.20686 1.00702 0.91278 1.02822 0.91665 0.91482 0.91452 0.91800 0.93193 0.93880 0.90743 0.94203 0.93887 0.90777 0.94212 0.90768 0.90637 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.64 9.33 36.00 0.34 -0.31 16 2 C -0.25 -4.37 6.40 -35.98 -0.23 -4.60 16 3 S 0.11 2.19 23.35 -107.50 -2.51 -0.32 16 4 C 0.12 3.09 8.89 -88.31 -0.79 2.31 16 5 N -0.42 -12.18 9.57 -10.92 -0.10 -12.29 16 6 C 0.24 6.64 6.54 -84.86 -0.55 6.09 16 7 C -0.44 -11.78 7.68 -37.94 -0.29 -12.07 16 8 H 0.09 2.22 4.68 -52.49 -0.25 1.98 16 9 C 0.07 1.92 5.49 -17.36 -0.10 1.82 16 10 N -0.76 -21.44 11.93 55.53 0.66 -20.78 16 11 Si 0.90 19.40 29.56 -169.99 -5.02 14.38 16 12 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 15 C -0.20 -4.78 6.01 -79.58 -0.48 -5.26 16 16 C 0.02 0.41 3.09 -91.77 -0.28 0.12 16 17 C -0.14 -2.65 9.04 37.16 0.34 -2.32 16 18 C -0.14 -2.65 9.04 37.16 0.34 -2.31 16 19 N -0.39 -9.24 3.14 -54.34 -0.17 -9.41 16 20 C 0.10 1.89 6.75 -81.67 -0.55 1.34 16 21 C -0.10 -1.36 9.39 36.00 0.34 -1.02 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 25 H 0.27 7.04 8.30 -40.82 -0.34 6.70 16 26 H 0.05 0.90 5.17 -51.93 -0.27 0.63 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.51 5.75 -51.93 -0.30 1.22 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.50 5.75 -51.93 -0.30 1.20 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.12 5.79 -51.93 -0.30 0.82 16 35 H 0.08 0.87 7.15 -51.93 -0.37 0.50 16 LS Contribution 293.91 15.07 4.43 4.43 Total: -1.00 -31.64 293.91 -8.92 -40.57 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.28 Total: -0.38 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.92 Total: -16.20 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.39 Total: -42.48 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.51 Total: -0.32 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.64 -8.92 -40.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259385085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.165 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds