Wall clock time and date at job start Mon Mar 30 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.75742 * 125.02895 * 2 1 4 4 C 1.76386 * 90.74196 * 179.97438 * 3 2 1 5 5 N 1.32283 * 141.21820 * 180.02562 * 4 3 2 6 6 C 1.35575 * 109.04112 * 179.97438 * 5 4 3 7 7 C 1.41158 * 126.31922 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99796 * 179.97438 * 7 6 5 9 9 C 1.39676 * 119.99606 * 359.97438 * 7 6 5 10 10 N 1.31028 * 120.00583 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 119.99741 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47014 * 89.99676 * 11 9 7 13 13 H 1.48497 * 109.47236 * 210.00021 * 11 9 7 14 14 H 1.48500 * 109.46833 * 330.00264 * 11 9 7 15 15 C 1.38898 * 107.36016 * 0.02562 * 6 5 4 16 16 C 1.50697 * 126.64484 * 179.97438 * 15 6 5 17 17 C 1.52997 * 109.47466 * 60.02369 * 16 15 6 18 18 C 1.53006 * 109.47239 * 300.02081 * 16 15 6 19 19 N 1.35658 * 109.12449 * 0.23531 * 4 3 2 20 20 C 1.30816 * 125.02996 * 179.97438 * 2 1 3 21 21 C 1.50698 * 121.81665 * 0.03122 * 20 2 1 22 22 H 1.09002 * 109.47204 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47431 * 120.02036 * 1 2 3 24 24 H 1.08998 * 109.46946 * 240.02145 * 1 2 3 25 25 H 0.97004 * 120.00373 * 179.97438 * 10 9 7 26 26 H 1.08998 * 109.46862 * 180.02562 * 16 15 6 27 27 H 1.09002 * 109.47153 * 59.99773 * 17 16 15 28 28 H 1.09001 * 109.46832 * 299.99964 * 17 16 15 29 29 H 1.09004 * 109.47261 * 179.97438 * 17 16 15 30 30 H 1.09000 * 109.47050 * 300.00336 * 18 16 15 31 31 H 1.09001 * 109.47002 * 60.00070 * 18 16 15 32 32 H 1.08993 * 109.46955 * 180.02562 * 18 16 15 33 33 H 1.09000 * 109.47369 * 89.97652 * 21 20 2 34 34 H 1.08996 * 109.47106 * 209.98028 * 21 20 2 35 35 H 1.09005 * 109.47130 * 329.98329 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5157 1.4391 0.0000 4 6 3.9731 0.4454 0.0008 5 7 5.2918 0.5491 0.0016 6 6 5.8332 -0.6939 0.0024 7 6 7.2098 -1.0062 0.0039 8 1 7.5294 -2.0378 0.0048 9 6 8.1584 0.0190 0.0042 10 7 7.7707 1.2706 0.0036 11 14 9.9802 -0.3943 0.0069 12 1 10.4647 -0.5051 -1.3924 13 1 10.7303 0.6792 0.7070 14 1 10.1937 -1.6857 0.7084 15 6 4.7833 -1.6032 0.0014 16 6 4.8950 -3.1060 0.0012 17 6 5.6506 -3.5615 1.2512 18 6 5.6535 -3.5610 -1.2473 19 7 3.6182 -0.8639 -0.0043 20 6 2.2579 -1.0712 0.0005 21 6 1.6653 -2.4568 0.0004 22 1 -0.3634 1.0277 -0.0005 23 1 -0.3634 -0.5141 -0.8898 24 1 -0.3633 -0.5135 0.8902 25 1 8.4295 1.9825 0.0042 26 1 3.8971 -3.5445 -0.0001 27 1 5.1102 -3.2375 2.1407 28 1 6.6485 -3.1230 1.2524 29 1 5.7310 -4.6486 1.2513 30 1 5.1152 -3.2365 -2.1378 31 1 6.6514 -3.1224 -1.2461 32 1 5.7339 -4.6479 -1.2476 33 1 1.5225 -2.7909 -1.0273 34 1 2.3407 -3.1408 0.5143 35 1 0.7040 -2.4409 0.5141 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259385085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:42 Heat of formation + Delta-G solvation = 50.253738 kcal Electronic energy + Delta-G solvation = -18198.107933 eV Core-core repulsion = 15515.533337 eV Total energy + Delta-G solvation = -2682.574597 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.72493 -38.08014 -36.17608 -35.10424 -32.71775 -30.32652 -29.60033 -28.45517 -27.83899 -25.47031 -23.40757 -22.67756 -21.08290 -19.76426 -18.64432 -18.05527 -16.85713 -16.68419 -16.05690 -15.22279 -15.06008 -14.84037 -14.55479 -14.33729 -13.88058 -13.76197 -13.61481 -13.39271 -13.12953 -13.02070 -12.91195 -12.79488 -12.40662 -12.06140 -11.99036 -11.84211 -11.76998 -11.75337 -11.27035 -10.88283 -10.76689 -10.11742 -9.18203 -8.30184 -8.15400 -6.17142 0.31659 0.34492 1.01621 1.39194 1.40256 1.54341 1.73023 2.19824 2.33138 2.44668 3.62947 3.82728 4.00812 4.16243 4.22634 4.41047 4.48002 4.50112 4.64389 4.74205 4.83919 4.87160 4.92283 5.00723 5.01884 5.06328 5.14350 5.21799 5.28289 5.44917 5.56565 5.57355 5.72469 5.99426 6.28685 6.66315 7.05221 7.10753 7.77281 8.65657 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.023266 B = 0.007633 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.187872 B = 3667.218080 C = 4674.035673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.221 4.221 3 S 0.117 5.883 4 C 0.074 3.926 5 N -0.480 5.480 6 C 0.191 3.809 7 C -0.465 4.465 8 H 0.100 0.900 9 C 0.019 3.981 10 N -0.815 5.815 11 Si 0.980 3.020 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.249 1.249 15 C -0.179 4.179 16 C 0.017 3.983 17 C -0.136 4.136 18 C -0.136 4.136 19 N -0.399 5.399 20 C 0.060 3.940 21 C -0.089 4.089 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.270 0.730 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 -8.409 0.039 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.341 4.341 3 S 0.365 5.635 4 C -0.290 4.290 5 N -0.208 5.208 6 C 0.066 3.934 7 C -0.499 4.499 8 H 0.118 0.882 9 C -0.195 4.195 10 N -0.442 5.442 11 Si 0.801 3.199 12 H -0.191 1.191 13 H -0.203 1.203 14 H -0.173 1.173 15 C -0.289 4.289 16 C -0.003 4.003 17 C -0.193 4.193 18 C -0.193 4.193 19 N -0.081 5.081 20 C -0.051 4.051 21 C -0.148 4.148 22 H 0.097 0.903 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.958 -6.126 0.037 13.436 hybrid contribution 1.160 -1.274 -0.029 1.723 sum -10.798 -7.400 0.007 13.090 Atomic orbital electron populations 1.20307 0.82632 1.04105 1.04475 1.23724 1.02125 0.92200 1.16039 1.83762 0.88598 1.06304 1.84802 1.26755 0.98912 0.87636 1.15699 1.71567 1.00254 1.26303 1.22634 1.18673 0.93803 0.85213 0.95687 1.18978 0.87970 0.94559 1.48421 0.88248 1.26859 1.05658 0.94338 0.92678 1.70278 1.36454 1.00637 1.36807 0.85241 0.76337 0.79165 0.79115 1.19100 1.20336 1.17276 1.21718 0.81620 0.94627 1.30897 1.19194 0.99274 0.85832 0.96000 1.21789 1.00646 1.00830 0.96065 1.21789 1.00628 1.00829 0.96072 1.43288 1.04857 1.07111 1.52825 1.19568 0.80442 1.00187 1.04879 1.20818 1.01850 0.87837 1.04268 0.90345 0.88727 0.88565 0.92047 0.90586 0.94708 0.93150 0.90222 0.94734 0.93130 0.90228 0.89215 0.91325 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 9.33 71.23 0.66 -0.37 16 2 C -0.22 -6.91 6.40 25.83 0.17 -6.75 16 3 S 0.12 4.65 23.35 -56.49 -1.32 3.33 16 4 C 0.07 3.92 8.89 179.54 1.60 5.52 16 5 N -0.48 -29.74 9.57 -188.46 -1.80 -31.55 16 6 C 0.19 11.19 6.54 39.44 0.26 11.45 16 7 C -0.47 -26.32 7.68 23.33 0.18 -26.14 16 8 H 0.10 5.15 4.68 -2.91 -0.01 5.14 16 9 C 0.02 1.08 5.49 85.16 0.47 1.54 16 10 N -0.82 -49.37 11.93 21.79 0.26 -49.11 16 11 Si 0.98 41.72 29.56 68.60 2.03 43.75 16 12 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 13 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 15 C -0.18 -8.82 6.01 41.75 0.25 -8.57 16 16 C 0.02 0.64 3.09 -11.54 -0.04 0.60 16 17 C -0.14 -4.85 9.04 71.98 0.65 -4.20 16 18 C -0.14 -4.84 9.04 71.98 0.65 -4.19 16 19 N -0.40 -18.76 3.14 -325.84 -1.02 -19.79 16 20 C 0.06 2.12 6.75 41.80 0.28 2.41 16 21 C -0.09 -2.14 9.39 71.24 0.67 -1.47 16 22 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.10 1.35 7.82 -2.39 -0.02 1.33 16 25 H 0.27 15.08 8.30 -92.70 -0.77 14.31 16 26 H 0.08 2.50 5.17 -2.39 -0.01 2.49 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 2.05 5.75 -2.39 -0.01 2.03 16 29 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 2.05 5.75 -2.39 -0.01 2.03 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.76 5.79 -2.39 -0.01 1.75 16 35 H 0.12 1.88 7.15 -2.38 -0.02 1.87 16 Total: -1.00 -76.62 293.91 5.05 -71.57 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.11 Total: 11.97 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 5.80 Total: -30.17 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -2.57 Total: -100.45 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.32 Total: 3.33 kcal Total: -76.62 5.05 -71.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259385085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.823 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds