Wall clock time and date at job start Mon Mar 30 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30903 * 121.83813 * 2 1 4 4 C 1.50698 * 125.09402 * 0.02562 * 3 2 1 5 5 C 1.53003 * 109.47530 * 119.99856 * 4 3 2 6 6 C 1.52998 * 109.47070 * 239.99976 * 4 3 2 7 7 S 1.75789 * 109.81960 * 179.87498 * 3 2 1 8 8 C 1.76248 * 90.69658 * 0.33761 * 7 3 2 9 9 N 1.32356 * 141.95581 * 179.83593 * 8 7 3 10 10 C 1.33873 * 109.14411 * 179.97438 * 9 8 7 11 11 C 1.50697 * 125.80949 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47058 * 305.00412 * 11 10 9 13 13 H 1.08000 * 120.00206 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99938 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99738 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99898 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47317 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47134 * 120.00306 * 16 14 12 19 19 H 1.48498 * 109.46979 * 239.99783 * 16 14 12 20 20 C 1.34341 * 108.38128 * 0.02562 * 10 9 8 21 21 N 1.35150 * 109.22268 * 359.79639 * 8 7 3 22 22 H 1.09002 * 109.47152 * 269.73624 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.73725 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.73706 * 1 2 3 25 25 H 1.09002 * 109.46767 * 359.97438 * 4 3 2 26 26 H 1.08997 * 109.46921 * 59.99767 * 5 4 3 27 27 H 1.08997 * 109.46958 * 180.02562 * 5 4 3 28 28 H 1.09003 * 109.46534 * 300.00243 * 5 4 3 29 29 H 1.09002 * 109.47111 * 299.99527 * 6 4 3 30 30 H 1.09002 * 109.47443 * 59.99647 * 6 4 3 31 31 H 1.09003 * 109.47329 * 179.97438 * 6 4 3 32 32 H 1.08995 * 109.46888 * 65.00277 * 11 10 9 33 33 H 1.08995 * 109.46840 * 184.99896 * 11 10 9 34 34 H 0.97001 * 119.99699 * 179.97438 * 15 14 12 35 35 H 1.08000 * 126.43313 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1121 0.0000 4 6 1.6071 2.4986 0.0006 5 6 2.0713 3.2502 1.2498 6 6 2.0704 3.2507 -1.2487 7 16 3.9169 0.7460 0.0036 8 6 3.5709 -0.9821 -0.0054 9 7 4.1661 -2.1643 -0.0114 10 6 3.2339 -3.1251 -0.0160 11 6 3.4971 -4.6089 -0.0229 12 6 4.3875 -4.9558 -1.1882 13 1 4.7284 -4.1794 -1.8571 14 6 4.7662 -6.2644 -1.4009 15 7 4.3507 -7.2098 -0.5865 16 14 5.8694 -6.6944 -2.8457 17 1 6.1946 -5.4602 -3.6047 18 1 7.1230 -7.3127 -2.3444 19 1 5.1670 -7.6523 -3.7368 20 6 2.0239 -2.5415 -0.0136 21 7 2.2323 -1.1679 -0.0059 22 1 -0.3633 -0.0047 1.0277 23 1 -0.3633 -0.8876 -0.5179 24 1 -0.3633 0.8924 -0.5098 25 1 0.5192 2.4301 0.0005 26 1 3.1591 3.3185 1.2494 27 1 1.6438 4.2528 1.2503 28 1 1.7412 2.7143 2.1398 29 1 3.1583 3.3191 -1.2490 30 1 1.7397 2.7152 -2.1387 31 1 1.6429 4.2534 -1.2485 32 1 3.9879 -4.8951 0.9072 33 1 2.5526 -5.1450 -0.1151 34 1 4.6167 -8.1305 -0.7364 35 1 1.0687 -3.0454 -0.0157 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259427071.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:40 Heat of formation + Delta-G solvation = 54.051053 kcal Electronic energy + Delta-G solvation = -17233.782355 eV Core-core repulsion = 14551.372422 eV Total energy + Delta-G solvation = -2682.409933 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.57834 -38.99708 -36.13974 -35.05253 -32.31144 -31.50057 -30.00414 -27.99036 -27.88037 -25.31178 -24.15602 -22.41422 -21.12173 -20.06222 -19.19420 -18.48634 -17.13329 -16.72930 -16.54859 -15.90740 -15.33391 -14.94719 -14.75628 -14.43208 -14.13857 -13.86352 -13.74635 -13.63035 -13.45412 -13.09933 -12.78176 -12.66723 -12.36562 -12.34159 -12.24461 -11.95937 -11.82521 -11.54106 -11.50384 -11.23873 -10.96628 -10.59876 -9.47342 -8.59904 -8.21233 -6.30478 -0.11376 -0.02662 0.71879 1.25289 1.36764 1.38338 1.51891 1.62010 1.97098 2.42618 3.10436 3.37217 3.70168 3.83355 3.95389 4.20639 4.22901 4.31216 4.50080 4.53872 4.66870 4.73648 4.82285 4.89030 5.00539 5.02485 5.16992 5.19246 5.30968 5.38257 5.40482 5.40939 5.63502 5.72150 6.00125 6.22625 6.77053 6.92232 7.36074 8.89887 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.037030 B = 0.004473 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.971988 B = 6258.609540 C = 6565.896186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.057 3.943 3 C -0.181 4.181 4 C -0.012 4.012 5 C -0.147 4.147 6 C -0.149 4.149 7 S 0.183 5.817 8 C 0.101 3.899 9 N -0.497 5.497 10 C 0.055 3.945 11 C 0.101 3.899 12 C -0.521 4.521 13 H 0.042 0.958 14 C 0.007 3.993 15 N -0.928 5.928 16 Si 0.965 3.035 17 H -0.275 1.275 18 H -0.274 1.274 19 H -0.269 1.269 20 C -0.064 4.064 21 N -0.406 5.406 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.006 0.994 33 H 0.031 0.969 34 H 0.267 0.733 35 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.304 23.986 1.369 26.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.051 4.051 3 C -0.300 4.300 4 C -0.032 4.032 5 C -0.205 4.205 6 C -0.207 4.207 7 S 0.433 5.567 8 C -0.265 4.265 9 N -0.222 5.222 10 C -0.075 4.075 11 C 0.063 3.937 12 C -0.559 4.559 13 H 0.060 0.940 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.790 3.210 17 H -0.200 1.200 18 H -0.200 1.200 19 H -0.194 1.194 20 C -0.195 4.195 21 N -0.085 5.085 22 H 0.115 0.885 23 H 0.090 0.910 24 H 0.137 0.863 25 H 0.139 0.861 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.024 0.976 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.343 24.424 1.410 26.188 hybrid contribution -0.898 -1.865 -0.522 2.135 sum -10.240 22.559 0.888 24.790 Atomic orbital electron populations 1.20845 0.83748 1.05524 1.04999 1.19586 0.97801 0.82015 1.05734 1.24077 0.94615 0.99761 1.11503 1.19919 1.01373 0.84534 0.97383 1.21921 1.01415 1.01107 0.96050 1.21940 1.01463 1.01150 0.96117 1.84184 1.04757 0.85026 1.82768 1.26860 0.84453 1.02402 1.12745 1.70430 1.33591 0.95932 1.22244 1.21422 0.88552 0.96723 1.00812 1.17443 0.96770 0.83284 0.96219 1.21257 1.30277 0.92950 1.11444 0.93984 1.25836 0.97707 0.96019 0.99556 1.70056 1.46622 1.01186 1.38971 0.85396 0.78637 0.78013 0.78958 1.19978 1.19981 1.19361 1.22768 1.01248 0.78954 1.16528 1.43906 1.06881 1.06194 1.51567 0.88451 0.91043 0.86281 0.86141 0.93196 0.89197 0.92412 0.93206 0.92560 0.89147 0.97618 0.95089 0.92433 0.77792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 9.75 71.24 0.69 -0.73 16 2 C 0.06 1.46 6.75 41.73 0.28 1.74 16 3 C -0.18 -3.99 5.00 25.74 0.13 -3.86 16 4 C -0.01 -0.14 3.10 -11.54 -0.04 -0.18 16 5 C -0.15 -1.63 9.11 71.98 0.66 -0.97 16 6 C -0.15 -1.71 9.11 71.98 0.66 -1.05 16 7 S 0.18 5.36 22.90 -56.49 -1.29 4.06 16 8 C 0.10 4.25 8.93 179.68 1.60 5.85 16 9 N -0.50 -25.92 11.30 -184.83 -2.09 -28.00 16 10 C 0.05 2.81 6.27 41.36 0.26 3.07 16 11 C 0.10 5.85 5.53 29.10 0.16 6.01 16 12 C -0.52 -32.51 9.07 25.60 0.23 -32.28 16 13 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 14 C 0.01 0.41 5.46 84.66 0.46 0.87 16 15 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 16 Si 0.97 47.23 29.54 68.60 2.03 49.26 16 17 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 20 C -0.06 -2.64 11.85 82.68 0.98 -1.66 16 21 N -0.41 -14.85 3.19 -342.28 -1.09 -15.94 16 22 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.12 1.05 6.50 -2.38 -0.02 1.03 16 25 H 0.12 0.91 6.11 -2.39 -0.01 0.90 16 26 H 0.05 0.66 7.99 -2.39 -0.02 0.64 16 27 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.68 8.00 -2.39 -0.02 0.66 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.03 1.77 8.10 -2.39 -0.02 1.75 16 34 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.21 6.82 8.06 -2.91 -0.02 6.80 16 Total: -1.00 -78.48 309.26 5.00 -73.49 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: 1.08 Total: -2.34 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 6.08 Total: -23.19 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -2.89 Total: -101.28 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.29 Total: 4.06 kcal Total: -78.48 5.00 -73.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259427071.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.537 kcal (2) G-P(sol) polarization free energy of solvation -78.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds