Wall clock time and date at job start Mon Mar 30 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47004 * 2 1 4 4 C 1.52997 * 109.47251 * 240.00209 * 2 1 3 5 5 C 1.50698 * 109.47148 * 119.99932 * 2 1 3 6 6 N 1.30379 * 125.56852 * 237.77490 * 5 2 1 7 7 C 1.33755 * 109.49088 * 180.02562 * 6 5 2 8 8 C 1.36262 * 107.82328 * 0.02562 * 7 6 5 9 9 S 1.75984 * 143.24898 * 180.02562 * 8 7 6 10 10 C 1.75788 * 90.73827 * 179.83048 * 9 8 7 11 11 C 1.30868 * 109.98341 * 0.27622 * 10 9 8 12 12 C 1.50697 * 121.80561 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47208 * 74.30881 * 12 11 10 14 14 H 1.07996 * 119.99881 * 359.72686 * 13 12 11 15 15 C 1.37872 * 120.00025 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99981 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99945 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47219 * 59.99910 * 17 15 13 19 19 H 1.48506 * 109.47135 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47030 * 299.99667 * 17 15 13 21 21 N 1.36070 * 107.43450 * 0.02562 * 8 7 6 22 22 H 1.09004 * 109.47188 * 309.24010 * 1 2 3 23 23 H 1.08990 * 109.47716 * 69.24498 * 1 2 3 24 24 H 1.09006 * 109.46806 * 189.24755 * 1 2 3 25 25 H 1.08992 * 109.47299 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47350 * 300.00636 * 3 2 1 27 27 H 1.09004 * 109.46891 * 60.00324 * 3 2 1 28 28 H 1.08998 * 109.47302 * 282.80544 * 4 2 1 29 29 H 1.09006 * 109.47056 * 42.79995 * 4 2 1 30 30 H 1.08997 * 109.47201 * 162.79692 * 4 2 1 31 31 H 1.08005 * 126.08960 * 180.02562 * 7 6 5 32 32 H 1.08007 * 125.01337 * 180.17820 * 10 9 8 33 33 H 1.09007 * 109.46905 * 314.31229 * 12 11 10 34 34 H 1.08998 * 109.47186 * 194.31135 * 12 11 10 35 35 H 0.97003 * 119.99803 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2304 6 7 2.8183 -0.1967 2.1350 7 6 3.0609 -1.1070 3.0844 8 6 2.3908 -2.2457 2.7514 9 16 2.0641 -3.8938 3.2749 10 6 1.0479 -4.1641 1.8662 11 6 1.0133 -3.0853 1.1262 12 6 0.2173 -3.0241 -0.1520 13 6 -1.2503 -2.9222 0.1746 14 1 -1.5746 -2.9080 1.2046 15 6 -2.1795 -2.8533 -0.8416 16 7 -1.7851 -2.8770 -2.0960 17 14 -3.9987 -2.7262 -0.4368 18 1 -4.2442 -1.4960 0.3578 19 1 -4.7831 -2.6673 -1.6964 20 1 -4.4149 -3.9149 0.3498 21 7 1.7381 -2.0073 1.5815 22 1 -0.3634 0.6501 0.7960 23 1 -0.3634 0.3641 -0.9609 24 1 -0.3633 -1.0144 0.1652 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.9464 -1.7983 -1.1107 29 1 1.4502 -0.4134 -2.1127 30 1 3.0866 -0.4656 -1.4145 31 1 3.6781 -0.9648 3.9593 32 1 0.5299 -5.0852 1.6433 33 1 0.3978 -3.9268 -0.7359 34 1 0.5227 -2.1512 -0.7288 35 1 -2.4388 -2.8281 -2.8110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259493646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:38 Heat of formation + Delta-G solvation = 82.807950 kcal Electronic energy + Delta-G solvation = -18605.233881 eV Core-core repulsion = 15924.070940 eV Total energy + Delta-G solvation = -2681.162940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.31731 -36.67575 -36.44103 -33.14170 -30.44743 -28.78713 -28.12267 -26.79964 -26.26152 -23.96685 -22.43301 -21.18122 -20.65099 -17.66940 -17.37795 -16.66768 -15.41300 -15.13093 -14.63871 -14.32903 -13.97050 -13.62083 -13.54232 -13.38546 -12.57598 -12.34001 -11.85539 -11.71005 -11.51779 -11.37895 -11.12567 -10.94154 -10.90067 -10.81281 -10.64639 -10.46613 -10.09889 -9.88931 -9.77019 -9.52646 -9.37106 -8.65533 -8.58821 -6.79006 -6.28450 -4.34535 1.59081 1.72267 2.27944 2.82334 3.16547 3.18929 3.23986 3.27905 3.43960 4.24868 4.66977 5.04387 5.13578 5.26251 5.43202 5.60382 5.69921 5.86561 5.92384 6.04392 6.16743 6.21617 6.26528 6.41419 6.47056 6.52885 6.60119 6.72078 6.76388 6.88754 7.10304 7.24557 7.40482 7.63468 7.71124 7.96294 8.30126 8.67163 9.29280 10.78919 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.009099 C = 0.006803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.887265 B = 3076.522104 C = 4114.828375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.023 3.977 3 C -0.123 4.123 4 C -0.151 4.151 5 C 0.242 3.758 6 N -0.459 5.459 7 C -0.002 4.002 8 C -0.087 4.087 9 S 0.074 5.926 10 C -0.235 4.235 11 C 0.125 3.875 12 C 0.041 3.959 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.070 3.930 16 N -0.881 5.881 17 Si 0.895 3.105 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.275 1.275 21 N -0.392 5.392 22 H 0.043 0.957 23 H 0.061 0.939 24 H 0.126 0.874 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.173 0.827 32 H 0.184 0.816 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.225 1.722 4.208 7.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.021 3.979 3 C -0.181 4.181 4 C -0.209 4.209 5 C -0.021 4.021 6 N -0.175 5.175 7 C -0.160 4.160 8 C -0.313 4.313 9 S 0.329 5.671 10 C -0.370 4.370 11 C 0.018 3.982 12 C 0.002 3.998 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.134 4.134 16 N -0.518 5.518 17 Si 0.722 3.278 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.200 1.200 21 N -0.069 5.069 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.143 0.857 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.190 0.810 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.795 1.647 5.042 8.620 hybrid contribution -1.746 -0.087 -0.730 1.895 sum 5.049 1.560 4.312 6.821 Atomic orbital electron populations 1.22680 0.91657 1.08144 1.01375 1.19030 0.96905 0.94207 0.87780 1.21691 1.01096 0.93741 1.01577 1.22201 1.00405 1.01682 0.96574 1.23593 0.99392 0.79895 0.99233 1.70052 1.15175 1.29643 1.02584 1.21584 1.05743 0.87288 1.01350 1.24482 1.08942 1.02297 0.95561 1.84002 1.53336 1.01796 1.27991 1.24498 1.10009 1.03718 0.98808 1.20225 0.93505 0.83954 1.00535 1.19002 0.93375 1.01256 0.86176 1.20821 0.89253 1.52584 0.93254 0.92235 1.24921 0.99202 0.94474 0.94832 1.69916 1.34824 1.48403 0.98701 0.86592 0.84315 0.79059 0.77882 1.19907 1.20968 1.19991 1.44025 1.34027 1.11361 1.17500 0.93830 0.92039 0.85650 0.92352 0.92367 0.92287 0.90994 0.91049 0.92992 0.80991 0.79873 0.93517 0.90945 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.60 7.97 37.16 0.30 -3.31 16 2 C 0.02 0.42 0.75 -155.66 -0.12 0.30 16 3 C -0.12 -1.91 7.85 37.16 0.29 -1.62 16 4 C -0.15 -2.64 7.78 37.16 0.29 -2.36 16 5 C 0.24 4.83 6.30 -153.18 -0.96 3.87 16 6 N -0.46 -8.93 10.48 -9.97 -0.10 -9.04 16 7 C 0.00 -0.03 11.93 -17.43 -0.21 -0.24 16 8 C -0.09 -1.67 7.83 -16.38 -0.13 -1.80 16 9 S 0.07 1.22 23.36 -107.50 -2.51 -1.29 16 10 C -0.24 -4.41 10.73 29.05 0.31 -4.09 16 11 C 0.13 2.63 5.65 -81.66 -0.46 2.16 16 12 C 0.04 0.94 3.73 -29.03 -0.11 0.83 16 13 C -0.52 -12.97 6.98 -34.44 -0.24 -13.21 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -23.07 13.29 55.43 0.74 -22.34 16 17 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 N -0.39 -8.07 3.09 -55.50 -0.17 -8.24 16 22 H 0.04 0.83 8.12 -51.93 -0.42 0.41 16 23 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 24 H 0.13 2.84 2.69 -51.93 -0.14 2.70 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.40 5.12 -51.93 -0.27 1.13 16 29 H 0.07 1.20 7.89 -51.93 -0.41 0.79 16 30 H 0.05 0.81 8.02 -51.93 -0.42 0.39 16 31 H 0.17 2.48 8.06 -52.48 -0.42 2.06 16 32 H 0.18 3.13 8.06 -52.48 -0.42 2.71 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.66 2.50 -51.93 -0.13 1.53 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 291.04 15.07 4.39 4.39 Total: -1.00 -26.60 291.04 -8.10 -34.70 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.27 Total: 4.68 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -1.14 Total: -17.80 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.46 Total: -39.61 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.51 Total: -1.29 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.60 -8.10 -34.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259493646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.506 kcal (2) G-P(sol) polarization free energy of solvation -26.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds