Wall clock time and date at job start Mon Mar 30 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47004 * 2 1 4 4 C 1.52997 * 109.47251 * 240.00209 * 2 1 3 5 5 C 1.50698 * 109.47148 * 119.99932 * 2 1 3 6 6 N 1.30379 * 125.56852 * 237.77490 * 5 2 1 7 7 C 1.33755 * 109.49088 * 180.02562 * 6 5 2 8 8 C 1.36262 * 107.82328 * 0.02562 * 7 6 5 9 9 S 1.75984 * 143.24898 * 180.02562 * 8 7 6 10 10 C 1.75788 * 90.73827 * 179.83048 * 9 8 7 11 11 C 1.30868 * 109.98341 * 0.27622 * 10 9 8 12 12 C 1.50697 * 121.80561 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47208 * 74.30881 * 12 11 10 14 14 H 1.07996 * 119.99881 * 359.72686 * 13 12 11 15 15 C 1.37872 * 120.00025 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99981 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99945 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47219 * 59.99910 * 17 15 13 19 19 H 1.48506 * 109.47135 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47030 * 299.99667 * 17 15 13 21 21 N 1.36070 * 107.43450 * 0.02562 * 8 7 6 22 22 H 1.09004 * 109.47188 * 309.24010 * 1 2 3 23 23 H 1.08990 * 109.47716 * 69.24498 * 1 2 3 24 24 H 1.09006 * 109.46806 * 189.24755 * 1 2 3 25 25 H 1.08992 * 109.47299 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47350 * 300.00636 * 3 2 1 27 27 H 1.09004 * 109.46891 * 60.00324 * 3 2 1 28 28 H 1.08998 * 109.47302 * 282.80544 * 4 2 1 29 29 H 1.09006 * 109.47056 * 42.79995 * 4 2 1 30 30 H 1.08997 * 109.47201 * 162.79692 * 4 2 1 31 31 H 1.08005 * 126.08960 * 180.02562 * 7 6 5 32 32 H 1.08007 * 125.01337 * 180.17820 * 10 9 8 33 33 H 1.09007 * 109.46905 * 314.31229 * 12 11 10 34 34 H 1.08998 * 109.47186 * 194.31135 * 12 11 10 35 35 H 0.97003 * 119.99803 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2304 6 7 2.8183 -0.1967 2.1350 7 6 3.0609 -1.1070 3.0844 8 6 2.3908 -2.2457 2.7514 9 16 2.0641 -3.8938 3.2749 10 6 1.0479 -4.1641 1.8662 11 6 1.0133 -3.0853 1.1262 12 6 0.2173 -3.0241 -0.1520 13 6 -1.2503 -2.9222 0.1746 14 1 -1.5746 -2.9080 1.2046 15 6 -2.1795 -2.8533 -0.8416 16 7 -1.7851 -2.8770 -2.0960 17 14 -3.9987 -2.7262 -0.4368 18 1 -4.2442 -1.4960 0.3578 19 1 -4.7831 -2.6673 -1.6964 20 1 -4.4149 -3.9149 0.3498 21 7 1.7381 -2.0073 1.5815 22 1 -0.3634 0.6501 0.7960 23 1 -0.3634 0.3641 -0.9609 24 1 -0.3633 -1.0144 0.1652 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.9464 -1.7983 -1.1107 29 1 1.4502 -0.4134 -2.1127 30 1 3.0866 -0.4656 -1.4145 31 1 3.6781 -0.9648 3.9593 32 1 0.5299 -5.0852 1.6433 33 1 0.3978 -3.9268 -0.7359 34 1 0.5227 -2.1512 -0.7288 35 1 -2.4388 -2.8281 -2.8110 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259493646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:38 Heat of formation + Delta-G solvation = 70.425706 kcal Electronic energy + Delta-G solvation = -18605.770815 eV Core-core repulsion = 15924.070940 eV Total energy + Delta-G solvation = -2681.699875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.77729 -38.21366 -37.87841 -34.99471 -32.07053 -30.31799 -29.65265 -28.25451 -27.73473 -25.71586 -23.98190 -22.64545 -22.12129 -19.20020 -18.84157 -18.54321 -16.93399 -16.73348 -16.31180 -15.78308 -15.46903 -15.10161 -15.04568 -14.78473 -14.33237 -13.97926 -13.28544 -13.17697 -13.03293 -12.97400 -12.66540 -12.57722 -12.46809 -12.39210 -12.12654 -11.90680 -11.82015 -11.53370 -11.34797 -11.05667 -10.94976 -10.56289 -10.12481 -8.31404 -8.08614 -6.31980 0.09471 0.33073 0.80896 1.30286 1.40519 1.43300 1.49473 1.69617 1.97036 2.39383 3.10174 3.25999 3.72236 3.81748 4.03898 4.18874 4.25944 4.42124 4.48531 4.69513 4.76412 4.79738 4.88033 4.95394 5.05186 5.06749 5.15067 5.23156 5.29796 5.33958 5.45728 5.61740 5.69519 5.76256 6.04726 6.20905 6.72504 6.84333 7.33479 8.85421 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.009099 C = 0.006803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.887265 B = 3076.522104 C = 4114.828375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.023 3.977 3 C -0.115 4.115 4 C -0.145 4.145 5 C 0.220 3.780 6 N -0.465 5.465 7 C -0.001 4.001 8 C -0.116 4.116 9 S 0.141 5.859 10 C -0.233 4.233 11 C 0.096 3.904 12 C 0.048 3.952 13 C -0.522 4.522 14 H 0.048 0.952 15 C 0.031 3.969 16 N -0.908 5.908 17 Si 0.945 3.055 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.271 1.271 21 N -0.400 5.400 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.207 0.793 32 H 0.196 0.804 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.753 1.986 5.354 8.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.021 3.979 3 C -0.173 4.173 4 C -0.203 4.203 5 C -0.042 4.042 6 N -0.181 5.181 7 C -0.159 4.159 8 C -0.340 4.340 9 S 0.397 5.603 10 C -0.369 4.369 11 C -0.012 4.012 12 C 0.009 3.991 13 C -0.560 4.560 14 H 0.066 0.934 15 C -0.170 4.170 16 N -0.546 5.546 17 Si 0.770 3.230 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.196 1.196 21 N -0.077 5.077 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.224 0.776 32 H 0.213 0.787 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.330 1.905 6.202 9.789 hybrid contribution -1.855 -0.215 -1.005 2.120 sum 5.475 1.690 5.197 7.736 Atomic orbital electron populations 1.22581 0.93275 1.06366 1.01374 1.19079 0.95575 0.95754 0.87506 1.21637 1.01370 0.91909 1.02364 1.22127 1.01623 1.00048 0.96489 1.23951 1.00127 0.80100 1.00039 1.70061 1.15166 1.30011 1.02850 1.22216 1.05342 0.86530 1.01786 1.25045 1.09408 1.04041 0.95551 1.83710 1.51489 0.99642 1.25445 1.24847 1.09168 1.03402 0.99488 1.19981 0.95282 0.85193 1.00789 1.18750 0.92866 1.00119 0.87323 1.20941 0.90576 1.51925 0.92591 0.93373 1.25509 1.02368 0.94391 0.94746 1.69997 1.35771 1.49495 0.99301 0.85801 0.80564 0.78889 0.77702 1.19970 1.20552 1.19625 1.44077 1.34149 1.11454 1.18058 0.93829 0.91873 0.88226 0.91763 0.90434 0.92646 0.93344 0.90814 0.91131 0.77616 0.78715 0.95722 0.90948 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.12 7.97 71.98 0.57 -6.55 16 2 C 0.02 0.82 0.75 -52.93 -0.04 0.78 16 3 C -0.12 -3.39 7.85 71.98 0.57 -2.83 16 4 C -0.15 -5.05 7.78 71.98 0.56 -4.49 16 5 C 0.22 8.65 6.30 137.35 0.86 9.52 16 6 N -0.47 -17.38 10.48 -185.47 -1.94 -19.33 16 7 C 0.00 -0.03 11.93 83.94 1.00 0.97 16 8 C -0.12 -4.22 7.83 83.58 0.65 -3.56 16 9 S 0.14 4.36 23.36 -56.49 -1.32 3.04 16 10 C -0.23 -8.53 10.73 67.92 0.73 -7.80 16 11 C 0.10 4.02 5.65 41.74 0.24 4.25 16 12 C 0.05 2.27 3.73 29.10 0.11 2.38 16 13 C -0.52 -26.41 6.98 25.60 0.18 -26.23 16 14 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 15 C 0.03 1.59 5.46 84.65 0.46 2.05 16 16 N -0.91 -48.17 13.29 21.45 0.28 -47.89 16 17 Si 0.94 40.93 29.54 68.60 2.03 42.96 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 N -0.40 -16.25 3.09 -329.50 -1.02 -17.27 16 22 H 0.04 1.66 8.12 -2.38 -0.02 1.64 16 23 H 0.06 2.41 7.96 -2.39 -0.02 2.39 16 24 H 0.10 4.58 2.69 -2.38 -0.01 4.58 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.91 5.12 -2.39 -0.01 1.90 16 29 H 0.07 2.47 7.89 -2.38 -0.02 2.46 16 30 H 0.07 2.13 8.02 -2.39 -0.02 2.12 16 31 H 0.21 5.25 8.06 -2.91 -0.02 5.23 16 32 H 0.20 6.48 8.06 -2.91 -0.02 6.45 16 33 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 3.41 2.50 -2.39 -0.01 3.41 16 35 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -56.08 291.04 5.03 -51.06 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 1.10 Total: 18.93 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 5.89 Total: -31.51 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.68 Total: -84.48 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.32 Total: 3.04 kcal Total: -56.08 5.03 -51.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259493646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.481 kcal (2) G-P(sol) polarization free energy of solvation -56.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds