Wall clock time and date at job start Mon Mar 30 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50699 * 109.47337 * 295.00177 * 4 2 1 6 6 C 1.30917 * 121.83636 * 84.71152 * 5 4 2 7 7 S 1.75782 * 109.81381 * 179.90673 * 6 5 4 8 8 C 1.76243 * 90.70215 * 0.29869 * 7 6 5 9 9 N 1.32360 * 141.95187 * 179.83067 * 8 7 6 10 10 C 1.33864 * 109.13696 * 180.02562 * 9 8 7 11 11 C 1.50700 * 125.80733 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46800 * 304.97770 * 11 10 9 13 13 H 1.08000 * 120.00569 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99893 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00192 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00146 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47631 * 89.99715 * 16 14 12 18 18 H 1.48507 * 109.47220 * 210.00274 * 16 14 12 19 19 H 1.48503 * 109.47064 * 329.99604 * 16 14 12 20 20 C 1.34343 * 108.39241 * 0.02562 * 10 9 8 21 21 N 1.35147 * 109.22506 * 359.83494 * 8 7 6 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 30 30 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 31 31 H 1.07998 * 125.09356 * 0.02562 * 6 5 4 32 32 H 1.09000 * 109.47461 * 64.97272 * 11 10 9 33 33 H 1.09003 * 109.47074 * 184.97948 * 11 10 9 34 34 H 0.96998 * 120.00376 * 179.97438 * 15 14 12 35 35 H 1.07987 * 126.44098 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 6 0.4665 -2.5843 -1.5948 7 16 0.3393 -4.3250 -1.3857 8 6 1.9694 -4.3858 -0.7184 9 7 2.8642 -5.2290 -0.2283 10 6 3.9661 -4.5499 0.1134 11 6 5.2175 -5.1419 0.7087 12 6 4.8643 -5.9170 1.9518 13 1 3.8365 -5.9748 2.2785 14 6 5.8535 -6.5516 2.6729 15 7 5.5453 -7.2276 3.7582 16 14 7.6315 -6.4500 2.1093 17 1 8.2812 -5.2683 2.7312 18 1 8.3515 -7.6829 2.5177 19 1 7.6753 -6.3180 0.6308 20 6 3.7666 -3.2508 -0.1647 21 7 2.4892 -3.1385 -0.6991 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6055 -0.2618 -2.1370 30 1 3.1264 -0.6443 -1.2951 31 1 -0.3077 -1.9493 -1.9994 32 1 5.6837 -5.8099 -0.0157 33 1 5.9120 -4.3416 0.9645 34 1 6.2411 -7.6744 4.2653 35 1 4.4680 -2.4455 -0.0045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259516246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:33 Heat of formation + Delta-G solvation = 77.814737 kcal Electronic energy + Delta-G solvation = -17325.121497 eV Core-core repulsion = 14643.742034 eV Total energy + Delta-G solvation = -2681.379462 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.20862 -37.97371 -35.27723 -32.95888 -30.80270 -30.24946 -28.30458 -27.50091 -26.67708 -22.97745 -22.78331 -20.67142 -19.69136 -19.36423 -17.89756 -16.68876 -15.73055 -15.56280 -15.22268 -14.55327 -14.28630 -13.99781 -13.94806 -13.45960 -12.90018 -12.67784 -12.52634 -12.23986 -12.09748 -11.82243 -11.57750 -11.37715 -11.05017 -10.90033 -10.85583 -10.55027 -10.42138 -10.08893 -9.94110 -9.37875 -9.24846 -8.49870 -8.07652 -7.30343 -5.96554 -3.93924 1.16552 1.20239 1.84500 2.54914 2.89297 3.33749 3.41867 3.44383 3.62374 4.34904 4.49216 4.54963 4.61567 4.87842 4.99790 5.09949 5.25743 5.32352 5.35507 5.38244 5.47243 5.56113 5.63444 5.69653 5.80979 5.85708 6.02277 6.06411 6.09412 6.49274 6.88145 7.10941 7.24183 7.37322 7.76984 8.43144 8.63994 9.12844 9.62690 11.17072 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.005167 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.972751 B = 5417.638019 C = 6127.111601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.058 4.058 5 C 0.098 3.902 6 C -0.244 4.244 7 S 0.160 5.840 8 C 0.128 3.872 9 N -0.433 5.433 10 C 0.106 3.894 11 C 0.056 3.944 12 C -0.503 4.503 13 H 0.076 0.924 14 C 0.067 3.933 15 N -0.902 5.902 16 Si 0.876 3.124 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.265 1.265 20 C -0.081 4.081 21 N -0.409 5.409 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.187 0.813 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.904 17.257 -12.115 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.098 4.098 5 C -0.013 4.013 6 C -0.382 4.382 7 S 0.410 5.590 8 C -0.237 4.237 9 N -0.156 5.156 10 C -0.024 4.024 11 C 0.018 3.982 12 C -0.541 4.541 13 H 0.094 0.906 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.703 3.297 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.210 4.210 21 N -0.090 5.090 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.205 0.795 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.900 15.385 -12.142 22.426 hybrid contribution 2.077 1.791 0.115 2.745 sum -8.823 17.176 -12.027 22.749 Atomic orbital electron populations 1.21976 0.94770 1.02521 1.01814 1.21093 0.96501 0.96120 0.97574 1.21821 1.01173 0.95285 1.01986 1.20575 1.02250 0.87228 0.99718 1.18937 0.90273 0.92105 1.00035 1.24635 1.00696 0.99355 1.13502 1.84438 1.04977 1.01424 1.68148 1.26172 1.01964 0.84456 1.11131 1.70649 0.99756 1.30093 1.15151 1.21313 0.95566 0.88710 0.96818 1.18229 0.87592 0.95969 0.96390 1.20907 0.96463 1.30463 1.06275 0.90562 1.24974 0.98734 0.94923 0.94751 1.69903 1.33317 1.34103 1.16784 0.86840 0.85450 0.77686 0.79725 1.20245 1.21237 1.18918 1.22544 0.85853 1.00223 1.12353 1.43742 1.13225 1.06904 1.45144 0.92557 0.91878 0.92476 0.90748 0.92295 0.92490 0.92532 0.89110 0.90218 0.79548 0.94419 0.95109 0.92736 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.67 37.16 0.32 -0.91 16 2 C -0.09 -0.85 2.91 -90.62 -0.26 -1.11 16 3 C -0.15 -1.07 9.19 37.16 0.34 -0.72 16 4 C -0.06 -0.54 5.03 -27.89 -0.14 -0.68 16 5 C 0.10 1.27 5.75 -81.75 -0.47 0.80 16 6 C -0.24 -2.73 8.86 29.04 0.26 -2.48 16 7 S 0.16 2.28 23.37 -107.50 -2.51 -0.24 16 8 C 0.13 2.55 8.92 -88.71 -0.79 1.75 16 9 N -0.43 -10.45 11.30 -9.77 -0.11 -10.56 16 10 C 0.11 2.48 6.27 -83.08 -0.52 1.96 16 11 C 0.06 1.42 4.60 -29.03 -0.13 1.28 16 12 C -0.50 -15.03 9.63 -34.44 -0.33 -15.36 16 13 H 0.08 2.55 7.98 -52.49 -0.42 2.13 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -28.54 13.96 55.43 0.77 -27.76 16 16 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 20 C -0.08 -1.54 11.85 -15.71 -0.19 -1.73 16 21 N -0.41 -7.13 3.19 -59.54 -0.19 -7.32 16 22 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.06 0.57 5.99 -51.93 -0.31 0.26 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.19 1.37 7.79 -52.49 -0.41 0.96 16 32 H 0.04 0.96 7.20 -51.93 -0.37 0.58 16 33 H 0.03 0.71 7.53 -51.93 -0.39 0.32 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.18 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 305.16 15.07 4.60 4.60 Total: -1.00 -34.51 305.16 -9.00 -43.51 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.87 Total: -3.97 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -2.01 Total: -15.30 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.47 Total: -45.65 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.51 Total: -0.24 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.51 -9.00 -43.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.326 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds