Wall clock time and date at job start Mon Mar 30 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50699 * 109.47337 * 295.00177 * 4 2 1 6 6 C 1.30917 * 121.83636 * 84.71152 * 5 4 2 7 7 S 1.75782 * 109.81381 * 179.90673 * 6 5 4 8 8 C 1.76243 * 90.70215 * 0.29869 * 7 6 5 9 9 N 1.32360 * 141.95187 * 179.83067 * 8 7 6 10 10 C 1.33864 * 109.13696 * 180.02562 * 9 8 7 11 11 C 1.50700 * 125.80733 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46800 * 304.97770 * 11 10 9 13 13 H 1.08000 * 120.00569 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99893 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00192 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00146 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47631 * 89.99715 * 16 14 12 18 18 H 1.48507 * 109.47220 * 210.00274 * 16 14 12 19 19 H 1.48503 * 109.47064 * 329.99604 * 16 14 12 20 20 C 1.34343 * 108.39241 * 0.02562 * 10 9 8 21 21 N 1.35147 * 109.22506 * 359.83494 * 8 7 6 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 27 27 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 29 29 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 30 30 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 31 31 H 1.07998 * 125.09356 * 0.02562 * 6 5 4 32 32 H 1.09000 * 109.47461 * 64.97272 * 11 10 9 33 33 H 1.09003 * 109.47074 * 184.97948 * 11 10 9 34 34 H 0.96998 * 120.00376 * 179.97438 * 15 14 12 35 35 H 1.07987 * 126.44098 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 6 0.4665 -2.5843 -1.5948 7 16 0.3393 -4.3250 -1.3857 8 6 1.9694 -4.3858 -0.7184 9 7 2.8642 -5.2290 -0.2283 10 6 3.9661 -4.5499 0.1134 11 6 5.2175 -5.1419 0.7087 12 6 4.8643 -5.9170 1.9518 13 1 3.8365 -5.9748 2.2785 14 6 5.8535 -6.5516 2.6729 15 7 5.5453 -7.2276 3.7582 16 14 7.6315 -6.4500 2.1093 17 1 8.2812 -5.2683 2.7312 18 1 8.3515 -7.6829 2.5177 19 1 7.6753 -6.3180 0.6308 20 6 3.7666 -3.2508 -0.1647 21 7 2.4892 -3.1385 -0.6991 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6055 -0.2618 -2.1370 30 1 3.1264 -0.6443 -1.2951 31 1 -0.3077 -1.9493 -1.9994 32 1 5.6837 -5.8099 -0.0157 33 1 5.9120 -4.3416 0.9645 34 1 6.2411 -7.6744 4.2653 35 1 4.4680 -2.4455 -0.0045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259516246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:33 Heat of formation + Delta-G solvation = 56.319240 kcal Electronic energy + Delta-G solvation = -17326.053611 eV Core-core repulsion = 14643.742034 eV Total energy + Delta-G solvation = -2682.311577 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.59695 -38.99148 -36.34555 -35.03416 -32.52989 -31.71166 -29.57978 -28.32702 -27.70018 -24.87671 -24.13940 -21.57307 -21.00886 -20.78310 -19.10485 -18.86425 -17.05326 -16.58082 -16.39868 -16.16174 -15.41315 -15.36379 -15.07785 -14.68750 -14.39917 -14.05854 -13.70542 -13.48027 -13.12047 -12.95217 -12.78758 -12.43229 -12.33612 -12.25043 -11.94469 -11.77541 -11.65702 -11.61799 -11.51725 -11.39060 -10.95439 -10.75265 -9.54252 -8.59364 -8.26639 -6.31614 -0.07992 0.00793 0.75899 1.27702 1.37578 1.42090 1.53979 1.65994 1.97860 2.38609 3.06894 3.41152 3.62246 3.87546 3.96098 4.10404 4.28434 4.32687 4.44398 4.56655 4.65370 4.74958 4.83249 4.87431 4.92019 5.03134 5.04963 5.18417 5.21732 5.31329 5.44048 5.44543 5.51496 5.63511 6.04047 6.31633 6.72421 6.93035 7.29684 8.91376 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.005167 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.972751 B = 5417.638019 C = 6127.111601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.051 4.051 5 C 0.071 3.929 6 C -0.211 4.211 7 S 0.181 5.819 8 C 0.101 3.899 9 N -0.501 5.501 10 C 0.055 3.945 11 C 0.065 3.935 12 C -0.516 4.516 13 H 0.016 0.984 14 C 0.002 3.998 15 N -0.955 5.955 16 Si 0.960 3.040 17 H -0.255 1.255 18 H -0.284 1.284 19 H -0.245 1.245 20 C -0.060 4.060 21 N -0.404 5.404 22 H 0.082 0.918 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.238 0.762 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.267 0.733 35 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.975 20.568 -14.606 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C -0.199 4.199 4 C -0.091 4.091 5 C -0.038 4.038 6 C -0.347 4.347 7 S 0.431 5.569 8 C -0.265 4.265 9 N -0.225 5.225 10 C -0.075 4.075 11 C 0.027 3.973 12 C -0.554 4.554 13 H 0.034 0.966 14 C -0.194 4.194 15 N -0.596 5.596 16 Si 0.781 3.219 17 H -0.180 1.180 18 H -0.209 1.209 19 H -0.168 1.168 20 C -0.191 4.191 21 N -0.084 5.084 22 H 0.101 0.899 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.145 0.855 30 H 0.096 0.904 31 H 0.254 0.746 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.009 18.738 -14.656 26.213 hybrid contribution 1.828 0.798 0.879 2.180 sum -9.181 19.536 -13.777 25.608 Atomic orbital electron populations 1.21984 0.93801 1.02119 1.03121 1.21065 0.97326 0.96739 0.96046 1.21791 1.01009 0.94142 1.02952 1.20715 1.02489 0.84705 1.01177 1.19612 0.90270 0.93048 1.00885 1.25295 1.00855 0.97640 1.10923 1.84386 1.01486 1.04217 1.66814 1.26890 1.03715 0.84990 1.10906 1.70435 1.01426 1.32732 1.17935 1.21136 0.95579 0.90697 1.00113 1.18023 0.89451 0.95946 0.93929 1.21081 0.93943 1.31802 1.08564 0.96583 1.26080 1.04843 0.93979 0.94482 1.70088 1.35485 1.35455 1.18550 0.85530 0.77606 0.78410 0.80305 1.17975 1.20934 1.16838 1.22769 0.86831 0.99329 1.10173 1.43954 1.12869 1.07331 1.44267 0.89874 0.93010 0.92678 0.94176 0.92372 0.92793 0.90530 0.85515 0.90436 0.74619 0.94976 0.92644 0.92388 0.77419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.67 71.98 0.62 -1.28 16 2 C -0.09 -1.41 2.91 -10.79 -0.03 -1.44 16 3 C -0.14 -1.63 9.19 71.98 0.66 -0.97 16 4 C -0.05 -0.76 5.03 29.85 0.15 -0.61 16 5 C 0.07 1.63 5.75 41.72 0.24 1.87 16 6 C -0.21 -3.91 8.86 67.86 0.60 -3.31 16 7 S 0.18 4.93 23.37 -56.49 -1.32 3.61 16 8 C 0.10 4.05 8.92 179.68 1.60 5.66 16 9 N -0.50 -25.50 11.30 -184.83 -2.09 -27.59 16 10 C 0.05 2.65 6.27 41.36 0.26 2.91 16 11 C 0.06 3.34 4.60 29.10 0.13 3.48 16 12 C -0.52 -32.59 9.63 25.60 0.25 -32.34 16 13 H 0.02 1.15 7.98 -2.91 -0.02 1.13 16 14 C 0.00 0.13 5.47 84.65 0.46 0.59 16 15 N -0.95 -63.15 13.96 21.45 0.30 -62.85 16 16 Si 0.96 45.33 27.47 68.60 1.88 47.21 16 17 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.24 -10.72 6.54 99.48 0.65 -10.07 16 20 C -0.06 -2.27 11.85 82.68 0.98 -1.30 16 21 N -0.40 -13.78 3.19 -342.29 -1.09 -14.87 16 22 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.05 0.75 5.99 -2.39 -0.01 0.74 16 24 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 29 H 0.13 1.04 8.13 -2.39 -0.02 1.02 16 30 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.24 1.96 7.79 -2.91 -0.02 1.94 16 32 H 0.03 1.66 7.20 -2.39 -0.02 1.64 16 33 H 0.06 2.53 7.53 -2.39 -0.02 2.51 16 34 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 35 H 0.21 6.13 8.06 -2.92 -0.02 6.11 16 Total: -1.00 -83.03 305.16 4.64 -78.39 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: 1.02 Total: 2.87 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 5.93 Total: -26.75 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -2.88 Total: -105.32 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -1.32 Total: 3.61 kcal Total: -83.03 4.64 -78.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259516246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.710 kcal (2) G-P(sol) polarization free energy of solvation -83.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds