Wall clock time and date at job start Mon Mar 30 2020 06:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32341 * 126.07581 * 2 1 4 4 C 1.33230 * 109.97420 * 179.97438 * 3 2 1 5 5 S 1.76392 * 141.35464 * 180.02562 * 4 3 2 6 6 C 1.75769 * 90.70673 * 179.97438 * 5 4 3 7 7 C 1.31074 * 109.79246 * 0.22189 * 6 5 4 8 8 C 1.50705 * 121.85188 * 179.74006 * 7 6 5 9 9 C 1.52999 * 109.46761 * 84.84199 * 8 7 6 10 10 C 1.53004 * 109.47203 * 65.00640 * 9 8 7 11 11 C 1.53000 * 109.47106 * 185.00113 * 9 8 7 12 12 N 1.35170 * 109.53368 * 359.97438 * 4 3 2 13 13 C 1.39445 * 126.07316 * 179.97438 * 2 1 3 14 14 C 1.39893 * 126.92227 * 0.04737 * 13 2 1 15 15 H 1.07998 * 120.00705 * 138.49573 * 14 13 2 16 16 C 1.39818 * 119.99713 * 318.49099 * 14 13 2 17 17 N 1.31087 * 120.00006 * 342.69783 * 16 14 13 18 18 Si 1.86801 * 120.00005 * 162.70162 * 16 14 13 19 19 H 1.48495 * 109.47211 * 90.00324 * 18 16 14 20 20 H 1.48505 * 109.46877 * 210.00162 * 18 16 14 21 21 H 1.48494 * 109.47068 * 329.99565 * 18 16 14 22 22 H 1.09002 * 109.47020 * 273.31857 * 1 2 3 23 23 H 1.08998 * 109.46897 * 33.31774 * 1 2 3 24 24 H 1.08999 * 109.47219 * 153.31817 * 1 2 3 25 25 H 1.07999 * 125.10014 * 180.02562 * 6 5 4 26 26 H 1.08997 * 109.47298 * 204.84206 * 8 7 6 27 27 H 1.08996 * 109.46917 * 324.84914 * 8 7 6 28 28 H 1.08996 * 109.47975 * 305.00350 * 9 8 7 29 29 H 1.09002 * 109.46690 * 299.99851 * 10 9 8 30 30 H 1.08995 * 109.47336 * 59.99339 * 10 9 8 31 31 H 1.08996 * 109.47755 * 180.02562 * 10 9 8 32 32 H 1.08995 * 109.46861 * 60.00153 * 11 9 8 33 33 H 1.08999 * 109.47252 * 180.02562 * 11 9 8 34 34 H 1.09000 * 109.47354 * 300.00323 * 11 9 8 35 35 H 0.97004 * 120.00222 * 175.11930 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2863 1.0696 0.0000 4 6 3.5663 0.7001 0.0006 5 16 5.1955 1.3764 0.0015 6 6 5.8893 -0.2385 0.0023 7 6 4.9314 -1.1332 -0.0029 8 6 5.2239 -2.6116 -0.0093 9 6 5.4485 -3.0932 1.4254 10 6 4.1520 -2.9407 2.2234 11 6 5.8675 -4.5646 1.4097 12 7 3.6473 -0.6491 0.0015 13 6 2.3281 -1.1271 0.0005 14 6 1.9190 -2.4649 0.0002 15 1 2.4312 -3.1862 -0.6193 16 6 0.8469 -2.8682 0.8019 17 7 0.4443 -2.1064 1.7899 18 14 -0.0118 -4.4926 0.4654 19 1 0.6508 -5.5725 1.2399 20 1 -1.4362 -4.3934 0.8734 21 1 0.0673 -4.8032 -0.9846 22 1 -0.3633 0.0595 1.0260 23 1 -0.3633 0.8587 -0.5645 24 1 -0.3633 -0.9182 -0.4614 25 1 6.9463 -0.4603 0.0035 26 1 4.3801 -3.1470 -0.4445 27 1 6.1193 -2.8021 -0.6009 28 1 6.2335 -2.4969 1.8903 29 1 3.8535 -1.8924 2.2346 30 1 3.3669 -3.5370 1.7586 31 1 4.3120 -3.2834 3.2457 32 1 6.7911 -4.6733 0.8412 33 1 6.0270 -4.9079 2.4319 34 1 5.0824 -5.1611 0.9449 35 1 -0.3428 -2.3510 2.3014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259527656.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:51 Heat of formation + Delta-G solvation = 60.420174 kcal Electronic energy + Delta-G solvation = -18590.898414 eV Core-core repulsion = 15908.764667 eV Total energy + Delta-G solvation = -2682.133747 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.92526 -36.96091 -34.71878 -33.49854 -30.18220 -29.54326 -27.42880 -26.58423 -26.41132 -23.98065 -21.98717 -19.92782 -18.99671 -18.79996 -17.60846 -16.11193 -15.19730 -14.77419 -14.67823 -13.91837 -13.86660 -13.40176 -13.26872 -12.93322 -12.16792 -12.04185 -11.84377 -11.63817 -11.50605 -11.33361 -11.31378 -11.01180 -10.82859 -10.75481 -10.53186 -10.37803 -10.35032 -10.02840 -9.89682 -9.27150 -8.90061 -8.60996 -7.27908 -6.88502 -6.44467 -4.40284 2.02870 2.18552 2.72878 2.92392 3.04314 3.07937 3.56896 3.81348 4.01501 4.30398 4.96158 5.13719 5.25917 5.30723 5.63341 5.81142 5.93795 5.97016 6.03512 6.08914 6.23985 6.28813 6.37692 6.49243 6.56402 6.71327 6.82501 6.95635 7.05112 7.14828 7.20593 7.27502 7.52649 7.76324 8.20388 8.28835 8.70461 8.71959 9.41805 10.19404 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.010770 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.944720 B = 2599.309200 C = 3960.583365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 C -0.056 4.056 3 N -0.437 5.437 4 C 0.036 3.964 5 S 0.079 5.921 6 C -0.274 4.274 7 C 0.137 3.863 8 C -0.062 4.062 9 C -0.085 4.085 10 C -0.141 4.141 11 C -0.143 4.143 12 N -0.427 5.427 13 C 0.220 3.780 14 C -0.452 4.452 15 H 0.076 0.924 16 C 0.089 3.911 17 N -0.787 5.787 18 Si 0.902 3.098 19 H -0.271 1.271 20 H -0.274 1.274 21 H -0.262 1.262 22 H 0.059 0.941 23 H 0.032 0.968 24 H 0.054 0.946 25 H 0.171 0.829 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 -4.348 -0.740 8.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.189 4.189 3 N -0.159 5.159 4 C -0.322 4.322 5 S 0.326 5.674 6 C -0.413 4.413 7 C 0.025 3.975 8 C -0.102 4.102 9 C -0.104 4.104 10 C -0.199 4.199 11 C -0.201 4.201 12 N -0.111 5.111 13 C 0.111 3.889 14 C -0.487 4.487 15 H 0.094 0.906 16 C -0.130 4.130 17 N -0.414 5.414 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.199 1.199 21 H -0.186 1.186 22 H 0.077 0.923 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.188 0.812 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.867 -2.232 -0.510 7.239 hybrid contribution -0.585 -2.794 -0.012 2.854 sum 6.282 -5.026 -0.522 8.062 Atomic orbital electron populations 1.19548 0.88502 0.99056 1.00565 1.20640 0.94900 0.86552 1.16805 1.69446 0.96895 1.32035 1.17537 1.24736 0.98041 0.84053 1.25387 1.83622 0.91320 1.05210 1.87224 1.24210 1.02026 0.94949 1.20067 1.18867 0.82853 0.96515 0.99245 1.20620 1.02699 0.88932 0.97990 1.21063 0.98830 0.95840 0.94620 1.21860 0.96536 1.03592 0.97868 1.21821 1.00769 0.96144 1.01354 1.44173 1.04828 1.07217 1.54922 1.18905 0.76811 0.94805 0.98386 1.18090 1.15249 0.91966 1.23437 0.90572 1.25535 0.96411 0.98496 0.92577 1.69963 1.21004 1.37448 1.12955 0.86408 0.79083 0.81911 0.79985 1.19583 1.19917 1.18568 0.92283 0.94855 0.92743 0.81187 0.89236 0.90580 0.91827 0.92198 0.90705 0.94482 0.93166 0.92865 0.92492 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.44 8.70 36.01 0.31 -0.13 16 2 C -0.06 -1.50 6.83 -81.92 -0.56 -2.06 16 3 N -0.44 -11.88 11.24 -8.68 -0.10 -11.98 16 4 C 0.04 0.90 8.92 -87.93 -0.78 0.12 16 5 S 0.08 1.58 23.37 -107.50 -2.51 -0.93 16 6 C -0.27 -4.92 10.82 28.99 0.31 -4.61 16 7 C 0.14 2.76 5.14 -81.91 -0.42 2.34 16 8 C -0.06 -1.05 4.87 -27.88 -0.14 -1.18 16 9 C -0.08 -1.33 2.91 -90.62 -0.26 -1.60 16 10 C -0.14 -2.71 8.42 37.16 0.31 -2.40 16 11 C -0.14 -1.86 9.19 37.16 0.34 -1.52 16 12 N -0.43 -10.31 2.73 -56.81 -0.15 -10.47 16 13 C 0.22 5.67 6.11 -82.91 -0.51 5.16 16 14 C -0.45 -10.93 6.40 -38.37 -0.25 -11.17 16 15 H 0.08 1.78 6.58 -52.49 -0.35 1.44 16 16 C 0.09 2.05 4.01 -17.28 -0.07 1.98 16 17 N -0.79 -19.07 10.91 55.55 0.61 -18.46 16 18 Si 0.90 17.59 29.60 -169.99 -5.03 12.55 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 22 H 0.06 1.41 7.41 -51.93 -0.39 1.03 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 1.25 7.16 -51.93 -0.37 0.88 16 25 H 0.17 2.38 8.06 -52.49 -0.42 1.96 16 26 H 0.09 1.66 6.05 -51.93 -0.31 1.34 16 27 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.38 6.65 -51.93 -0.35 1.03 16 30 H 0.07 1.55 6.45 -51.93 -0.33 1.22 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.28 6.29 8.31 -40.82 -0.34 5.95 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -28.05 295.12 -9.06 -37.11 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.61 Total: 2.80 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -1.70 Total: -15.07 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.35 Total: -40.91 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.55 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.51 Total: -0.93 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.05 -9.06 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259527656.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.526 kcal (2) G-P(sol) polarization free energy of solvation -28.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds