Wall clock time and date at job start Mon Mar 30 2020 06:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32341 * 126.07581 * 2 1 4 4 C 1.33230 * 109.97420 * 179.97438 * 3 2 1 5 5 S 1.76392 * 141.35464 * 180.02562 * 4 3 2 6 6 C 1.75769 * 90.70673 * 179.97438 * 5 4 3 7 7 C 1.31074 * 109.79246 * 0.22189 * 6 5 4 8 8 C 1.50705 * 121.85188 * 179.74006 * 7 6 5 9 9 C 1.52999 * 109.46761 * 84.84199 * 8 7 6 10 10 C 1.53004 * 109.47203 * 65.00640 * 9 8 7 11 11 C 1.53000 * 109.47106 * 185.00113 * 9 8 7 12 12 N 1.35170 * 109.53368 * 359.97438 * 4 3 2 13 13 C 1.39445 * 126.07316 * 179.97438 * 2 1 3 14 14 C 1.39893 * 126.92227 * 0.04737 * 13 2 1 15 15 H 1.07998 * 120.00705 * 138.49573 * 14 13 2 16 16 C 1.39818 * 119.99713 * 318.49099 * 14 13 2 17 17 N 1.31087 * 120.00006 * 342.69783 * 16 14 13 18 18 Si 1.86801 * 120.00005 * 162.70162 * 16 14 13 19 19 H 1.48495 * 109.47211 * 90.00324 * 18 16 14 20 20 H 1.48505 * 109.46877 * 210.00162 * 18 16 14 21 21 H 1.48494 * 109.47068 * 329.99565 * 18 16 14 22 22 H 1.09002 * 109.47020 * 273.31857 * 1 2 3 23 23 H 1.08998 * 109.46897 * 33.31774 * 1 2 3 24 24 H 1.08999 * 109.47219 * 153.31817 * 1 2 3 25 25 H 1.07999 * 125.10014 * 180.02562 * 6 5 4 26 26 H 1.08997 * 109.47298 * 204.84206 * 8 7 6 27 27 H 1.08996 * 109.46917 * 324.84914 * 8 7 6 28 28 H 1.08996 * 109.47975 * 305.00350 * 9 8 7 29 29 H 1.09002 * 109.46690 * 299.99851 * 10 9 8 30 30 H 1.08995 * 109.47336 * 59.99339 * 10 9 8 31 31 H 1.08996 * 109.47755 * 180.02562 * 10 9 8 32 32 H 1.08995 * 109.46861 * 60.00153 * 11 9 8 33 33 H 1.08999 * 109.47252 * 180.02562 * 11 9 8 34 34 H 1.09000 * 109.47354 * 300.00323 * 11 9 8 35 35 H 0.97004 * 120.00222 * 175.11930 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2863 1.0696 0.0000 4 6 3.5663 0.7001 0.0006 5 16 5.1955 1.3764 0.0015 6 6 5.8893 -0.2385 0.0023 7 6 4.9314 -1.1332 -0.0029 8 6 5.2239 -2.6116 -0.0093 9 6 5.4485 -3.0932 1.4254 10 6 4.1520 -2.9407 2.2234 11 6 5.8675 -4.5646 1.4097 12 7 3.6473 -0.6491 0.0015 13 6 2.3281 -1.1271 0.0005 14 6 1.9190 -2.4649 0.0002 15 1 2.4312 -3.1862 -0.6193 16 6 0.8469 -2.8682 0.8019 17 7 0.4443 -2.1064 1.7899 18 14 -0.0118 -4.4926 0.4654 19 1 0.6508 -5.5725 1.2399 20 1 -1.4362 -4.3934 0.8734 21 1 0.0673 -4.8032 -0.9846 22 1 -0.3633 0.0595 1.0260 23 1 -0.3633 0.8587 -0.5645 24 1 -0.3633 -0.9182 -0.4614 25 1 6.9463 -0.4603 0.0035 26 1 4.3801 -3.1470 -0.4445 27 1 6.1193 -2.8021 -0.6009 28 1 6.2335 -2.4969 1.8903 29 1 3.8535 -1.8924 2.2346 30 1 3.3669 -3.5370 1.7586 31 1 4.3120 -3.2834 3.2457 32 1 6.7911 -4.6733 0.8412 33 1 6.0270 -4.9079 2.4319 34 1 5.0824 -5.1611 0.9449 35 1 -0.3428 -2.3510 2.3014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259527656.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:51 Heat of formation + Delta-G solvation = 46.254856 kcal Electronic energy + Delta-G solvation = -18591.512669 eV Core-core repulsion = 15908.764667 eV Total energy + Delta-G solvation = -2682.748002 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.69458 -38.46444 -36.30593 -35.20492 -31.89041 -31.39013 -29.07865 -27.99273 -27.87683 -25.78701 -23.64311 -21.48771 -20.69286 -20.44641 -19.26947 -17.87540 -16.88595 -16.47439 -16.13146 -15.48758 -15.26826 -14.91034 -14.81637 -14.49929 -13.85837 -13.56518 -13.46300 -13.22673 -13.05102 -12.99739 -12.86194 -12.65849 -12.40561 -12.33615 -12.07268 -11.91189 -11.72806 -11.45167 -11.39738 -11.03704 -10.64582 -10.52112 -9.05164 -8.64671 -8.21035 -6.24958 0.42404 0.48591 1.13811 1.36660 1.43878 1.54787 1.83420 2.17014 2.36311 2.39369 3.16529 3.77420 3.99482 4.07812 4.21126 4.36328 4.53941 4.65660 4.71732 4.79824 4.87832 4.89941 4.96258 5.07123 5.08611 5.16816 5.20222 5.24470 5.31507 5.46168 5.50236 5.62684 5.74938 5.98419 6.38415 6.41355 6.89144 6.91343 7.52499 8.45090 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.010770 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.944720 B = 2599.309200 C = 3960.583365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 C -0.095 4.095 3 N -0.478 5.478 4 C 0.009 3.991 5 S 0.113 5.887 6 C -0.248 4.248 7 C 0.099 3.901 8 C -0.056 4.056 9 C -0.078 4.078 10 C -0.131 4.131 11 C -0.137 4.137 12 N -0.433 5.433 13 C 0.202 3.798 14 C -0.462 4.462 15 H 0.077 0.923 16 C 0.060 3.940 17 N -0.819 5.819 18 Si 0.965 3.035 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.259 1.259 22 H 0.048 0.952 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.221 0.779 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.013 0.987 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.188 -6.025 -1.022 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.226 4.226 3 N -0.202 5.202 4 C -0.350 4.350 5 S 0.359 5.641 6 C -0.385 4.385 7 C -0.011 4.011 8 C -0.096 4.096 9 C -0.097 4.097 10 C -0.188 4.188 11 C -0.194 4.194 12 N -0.118 5.118 13 C 0.092 3.908 14 C -0.497 4.497 15 H 0.095 0.905 16 C -0.157 4.157 17 N -0.446 5.446 18 Si 0.787 3.213 19 H -0.188 1.188 20 H -0.194 1.194 21 H -0.183 1.183 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.238 0.762 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.096 0.904 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.327 -3.913 -0.795 10.146 hybrid contribution -1.206 -2.169 0.112 2.485 sum 8.121 -6.082 -0.682 10.169 Atomic orbital electron populations 1.19422 0.87590 0.99357 0.99966 1.21130 0.96064 0.87226 1.18223 1.69387 0.98267 1.32807 1.19708 1.25737 0.99441 0.85583 1.24222 1.83454 0.87850 1.06291 1.86469 1.24861 1.03862 0.93087 1.16695 1.19521 0.81562 0.98796 1.01205 1.20698 1.03454 0.86411 0.99011 1.21046 0.96993 0.98226 0.93400 1.21721 0.98052 0.99982 0.99061 1.21768 1.01696 0.93498 1.02473 1.44341 1.05895 1.06939 1.54618 1.19165 0.77730 0.95226 0.98680 1.18207 1.16127 0.91440 1.23938 0.90481 1.26241 0.96326 1.01309 0.91786 1.70033 1.21500 1.39297 1.13753 0.85451 0.78084 0.77991 0.79822 1.18807 1.19402 1.18327 0.93330 0.93929 0.92755 0.76201 0.91520 0.86575 0.90444 0.96741 0.92874 0.93500 0.90351 0.91934 0.93276 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.26 8.70 71.24 0.62 0.35 16 2 C -0.09 -5.26 6.83 42.77 0.29 -4.96 16 3 N -0.48 -26.99 11.24 -181.37 -2.04 -29.03 16 4 C 0.01 0.43 8.92 179.41 1.60 2.03 16 5 S 0.11 4.32 23.37 -56.49 -1.32 3.00 16 6 C -0.25 -8.05 10.82 67.71 0.73 -7.32 16 7 C 0.10 3.82 5.14 41.60 0.21 4.04 16 8 C -0.06 -1.74 4.87 29.85 0.15 -1.60 16 9 C -0.08 -2.25 2.91 -10.79 -0.03 -2.28 16 10 C -0.13 -5.00 8.42 71.98 0.61 -4.39 16 11 C -0.14 -3.05 9.19 71.98 0.66 -2.39 16 12 N -0.43 -21.20 2.73 -333.64 -0.91 -22.11 16 13 C 0.20 10.77 6.11 38.48 0.24 11.00 16 14 C -0.46 -22.89 6.40 23.05 0.15 -22.74 16 15 H 0.08 3.69 6.58 -2.91 -0.02 3.67 16 16 C 0.06 2.82 4.01 85.19 0.34 3.16 16 17 N -0.82 -40.88 10.91 21.82 0.24 -40.64 16 18 Si 0.97 36.07 29.60 68.60 2.03 38.10 16 19 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 20 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 22 H 0.05 2.44 7.41 -2.39 -0.02 2.42 16 23 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.05 2.59 7.16 -2.39 -0.02 2.57 16 25 H 0.22 4.81 8.06 -2.91 -0.02 4.79 16 26 H 0.07 2.40 6.05 -2.39 -0.01 2.39 16 27 H 0.12 2.66 8.13 -2.39 -0.02 2.64 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.01 0.64 6.65 -2.39 -0.02 0.63 16 30 H 0.05 2.23 6.45 -2.39 -0.02 2.21 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.29 13.13 8.31 -92.71 -0.77 12.36 16 Total: -1.00 -64.18 295.12 4.66 -59.52 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.09 Total: 16.26 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 5.56 Total: -25.10 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -2.71 Total: -91.79 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.32 Total: 3.00 kcal Total: -64.18 4.66 -59.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259527656.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.778 kcal (2) G-P(sol) polarization free energy of solvation -64.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds