Wall clock time and date at job start Mon Mar 30 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30866 * 121.80101 * 2 1 4 4 C 1.50696 * 125.00849 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47277 * 119.99757 * 4 3 2 6 6 C 1.53003 * 109.47075 * 239.99573 * 4 3 2 7 7 S 1.75788 * 109.98041 * 179.97438 * 3 2 1 8 8 C 1.75989 * 90.73873 * 0.02562 * 7 3 2 9 9 C 1.36262 * 143.24693 * 180.33365 * 8 7 3 10 10 N 1.33766 * 107.82178 * 179.97438 * 9 8 7 11 11 C 1.30383 * 109.48661 * 359.68103 * 10 9 8 12 12 C 1.50694 * 125.56510 * 180.22128 * 11 10 9 13 13 C 1.50698 * 109.47276 * 269.97324 * 12 11 10 14 14 H 1.07998 * 119.99798 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00264 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00163 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00195 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47115 * 60.00356 * 17 15 13 19 19 H 1.48498 * 109.47510 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47297 * 300.00581 * 17 15 13 21 21 N 1.36067 * 109.31438 * 359.97438 * 8 7 3 22 22 H 1.09000 * 109.46897 * 90.00315 * 1 2 3 23 23 H 1.08998 * 109.46846 * 209.99531 * 1 2 3 24 24 H 1.08996 * 109.47447 * 330.00117 * 1 2 3 25 25 H 1.09000 * 109.47094 * 359.97438 * 4 3 2 26 26 H 1.09000 * 109.47334 * 59.99809 * 5 4 3 27 27 H 1.09004 * 109.47063 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.47208 * 299.99660 * 5 4 3 29 29 H 1.09000 * 109.47035 * 299.99883 * 6 4 3 30 30 H 1.09002 * 109.47204 * 60.00128 * 6 4 3 31 31 H 1.09004 * 109.47158 * 179.97438 * 6 4 3 32 32 H 1.07996 * 126.09256 * 359.96297 * 9 8 7 33 33 H 1.09001 * 109.47306 * 29.97757 * 12 11 10 34 34 H 1.09002 * 109.47182 * 149.97144 * 12 11 10 35 35 H 0.96992 * 119.99910 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1122 0.0000 4 6 1.6032 2.4974 -0.0006 5 6 2.0648 3.2505 1.2487 6 6 2.0660 3.2500 -1.2498 7 16 3.9173 0.7521 0.0007 8 6 3.5790 -0.9750 0.0002 9 6 4.1693 -2.2031 0.0050 10 7 3.1989 -3.1238 0.0004 11 6 2.0373 -2.5314 -0.0001 12 6 0.6996 -3.2253 0.0000 13 6 0.2537 -3.4567 -1.4208 14 1 0.8768 -3.1340 -2.2417 15 6 -0.9494 -4.0813 -1.6726 16 7 -1.7081 -4.4748 -0.6730 17 14 -1.5025 -4.3676 -3.4338 18 1 -0.5046 -5.2153 -4.1345 19 1 -2.8206 -5.0514 -3.4338 20 1 -1.6221 -3.0632 -4.1333 21 7 2.2323 -1.1698 0.0001 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 0.5155 2.4267 -0.0014 26 1 3.1525 3.3212 1.2492 27 1 1.6352 4.2523 1.2485 28 1 1.7352 2.7145 2.1387 29 1 3.1537 3.3207 -1.2493 30 1 1.7371 2.7135 -2.1398 31 1 1.6363 4.2518 -1.2504 32 1 5.2314 -2.3984 0.0112 33 1 0.7868 -4.1825 0.5140 34 1 -0.0327 -2.6025 0.5138 35 1 -2.5546 -4.9138 -0.8502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259628162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:47 Heat of formation + Delta-G solvation = 67.268178 kcal Electronic energy + Delta-G solvation = -17801.367732 eV Core-core repulsion = 15119.530937 eV Total energy + Delta-G solvation = -2681.836795 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.06423 -37.66393 -34.68721 -33.47251 -30.82837 -30.15705 -27.46842 -27.26536 -26.80631 -23.55167 -22.60813 -21.62557 -19.52633 -18.58514 -17.54853 -16.56098 -15.44650 -15.37578 -14.82825 -14.39690 -14.30331 -13.57641 -13.53519 -12.85773 -12.79315 -12.42849 -12.41035 -12.37564 -12.17069 -11.61326 -11.41803 -11.33670 -11.10662 -10.93767 -10.71424 -10.62574 -10.51953 -10.01591 -9.69937 -9.58750 -9.33974 -8.55254 -8.51580 -6.74121 -6.14574 -4.20552 1.43989 1.63888 2.11627 2.71121 3.16190 3.26592 3.31020 3.34828 3.73560 4.36916 4.63728 4.80195 5.03403 5.05933 5.17665 5.34096 5.34921 5.49194 5.54490 5.56284 5.69404 5.74247 5.86322 5.89121 5.91545 6.05314 6.13341 6.22637 6.34271 6.74162 6.93715 7.28616 7.37333 7.75825 7.78518 8.12800 8.64645 8.80981 9.43480 10.93474 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.021953 B = 0.006439 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.141318 B = 4347.260512 C = 5017.729490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.112 3.888 3 C -0.203 4.203 4 C -0.016 4.016 5 C -0.145 4.145 6 C -0.145 4.145 7 S 0.087 5.913 8 C -0.115 4.115 9 C 0.013 3.987 10 N -0.470 5.470 11 C 0.285 3.715 12 C 0.093 3.907 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.277 1.277 21 N -0.408 5.408 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.170 0.830 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 15.367 2.376 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.002 3.998 3 C -0.321 4.321 4 C -0.036 4.036 5 C -0.203 4.203 6 C -0.202 4.202 7 S 0.344 5.656 8 C -0.337 4.337 9 C -0.143 4.143 10 N -0.185 5.185 11 C 0.023 3.977 12 C 0.055 3.945 13 C -0.552 4.552 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.726 3.274 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.202 1.202 21 N -0.087 5.087 22 H 0.106 0.894 23 H 0.110 0.890 24 H 0.098 0.902 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.187 0.813 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.565 15.244 2.428 16.775 hybrid contribution -1.426 -0.300 -1.032 1.786 sum 5.139 14.945 1.396 15.865 Atomic orbital electron populations 1.20852 0.86627 1.04285 1.04527 1.19001 0.95995 0.83125 1.01662 1.23252 0.95922 0.97823 1.15098 1.19641 1.00199 0.87589 0.96210 1.21874 1.01595 0.99733 0.97057 1.21866 1.01542 0.99716 0.97116 1.83847 1.03600 0.92647 1.85551 1.24215 0.88113 1.00001 1.21374 1.21713 0.99012 0.84873 1.08733 1.70265 0.97320 1.30618 1.20272 1.25159 0.98307 0.75449 0.98826 1.18035 0.82012 0.95390 0.99067 1.20842 1.04153 1.39477 0.90746 0.92591 1.24925 0.96260 0.95086 0.97525 1.69923 1.12497 1.39717 1.30820 0.86542 0.77889 0.78559 0.84433 1.19965 1.21027 1.20223 1.44100 1.05175 1.06776 1.52650 0.89420 0.89042 0.90243 0.89000 0.92429 0.92004 0.92214 0.92447 0.92105 0.92002 0.81253 0.92575 0.94169 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.53 36.01 0.34 -1.32 16 2 C 0.11 1.99 6.75 -81.66 -0.55 1.44 16 3 C -0.20 -3.03 5.00 -35.99 -0.18 -3.21 16 4 C -0.02 -0.18 3.10 -91.77 -0.28 -0.46 16 5 C -0.15 -1.39 9.11 37.16 0.34 -1.05 16 6 C -0.14 -1.45 9.11 37.16 0.34 -1.11 16 7 S 0.09 1.34 22.87 -107.50 -2.46 -1.12 16 8 C -0.11 -2.25 7.83 -16.38 -0.13 -2.37 16 9 C 0.01 0.27 11.93 -17.42 -0.21 0.06 16 10 N -0.47 -11.12 11.22 -9.97 -0.11 -11.23 16 11 C 0.29 6.81 7.34 -153.18 -1.12 5.69 16 12 C 0.09 2.41 5.32 -29.04 -0.15 2.25 16 13 C -0.51 -14.16 9.09 -34.44 -0.31 -14.48 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 17 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 N -0.41 -8.61 3.19 -55.50 -0.18 -8.79 16 22 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 23 H 0.09 1.67 5.67 -51.93 -0.29 1.37 16 24 H 0.08 0.97 6.51 -51.93 -0.34 0.63 16 25 H 0.09 0.94 6.10 -51.93 -0.32 0.63 16 26 H 0.06 0.56 7.99 -51.93 -0.41 0.15 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.58 7.99 -51.93 -0.41 0.16 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 33 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.04 1.02 5.75 -51.93 -0.30 0.72 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 303.96 15.07 4.58 4.58 Total: -1.00 -30.34 303.96 -9.05 -39.39 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -4.58 Total: -1.66 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.02 Total: -12.89 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.45 Total: -44.47 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.46 Total: -1.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.34 -9.05 -39.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.662 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds