Wall clock time and date at job start Mon Mar 30 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.30866 * 121.80101 * 2 1 4 4 C 1.50696 * 125.00849 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47277 * 119.99757 * 4 3 2 6 6 C 1.53003 * 109.47075 * 239.99573 * 4 3 2 7 7 S 1.75788 * 109.98041 * 179.97438 * 3 2 1 8 8 C 1.75989 * 90.73873 * 0.02562 * 7 3 2 9 9 C 1.36262 * 143.24693 * 180.33365 * 8 7 3 10 10 N 1.33766 * 107.82178 * 179.97438 * 9 8 7 11 11 C 1.30383 * 109.48661 * 359.68103 * 10 9 8 12 12 C 1.50694 * 125.56510 * 180.22128 * 11 10 9 13 13 C 1.50698 * 109.47276 * 269.97324 * 12 11 10 14 14 H 1.07998 * 119.99798 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00264 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00163 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00195 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47115 * 60.00356 * 17 15 13 19 19 H 1.48498 * 109.47510 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47297 * 300.00581 * 17 15 13 21 21 N 1.36067 * 109.31438 * 359.97438 * 8 7 3 22 22 H 1.09000 * 109.46897 * 90.00315 * 1 2 3 23 23 H 1.08998 * 109.46846 * 209.99531 * 1 2 3 24 24 H 1.08996 * 109.47447 * 330.00117 * 1 2 3 25 25 H 1.09000 * 109.47094 * 359.97438 * 4 3 2 26 26 H 1.09000 * 109.47334 * 59.99809 * 5 4 3 27 27 H 1.09004 * 109.47063 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.47208 * 299.99660 * 5 4 3 29 29 H 1.09000 * 109.47035 * 299.99883 * 6 4 3 30 30 H 1.09002 * 109.47204 * 60.00128 * 6 4 3 31 31 H 1.09004 * 109.47158 * 179.97438 * 6 4 3 32 32 H 1.07996 * 126.09256 * 359.96297 * 9 8 7 33 33 H 1.09001 * 109.47306 * 29.97757 * 12 11 10 34 34 H 1.09002 * 109.47182 * 149.97144 * 12 11 10 35 35 H 0.96992 * 119.99910 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1122 0.0000 4 6 1.6032 2.4974 -0.0006 5 6 2.0648 3.2505 1.2487 6 6 2.0660 3.2500 -1.2498 7 16 3.9173 0.7521 0.0007 8 6 3.5790 -0.9750 0.0002 9 6 4.1693 -2.2031 0.0050 10 7 3.1989 -3.1238 0.0004 11 6 2.0373 -2.5314 -0.0001 12 6 0.6996 -3.2253 0.0000 13 6 0.2537 -3.4567 -1.4208 14 1 0.8768 -3.1340 -2.2417 15 6 -0.9494 -4.0813 -1.6726 16 7 -1.7081 -4.4748 -0.6730 17 14 -1.5025 -4.3676 -3.4338 18 1 -0.5046 -5.2153 -4.1345 19 1 -2.8206 -5.0514 -3.4338 20 1 -1.6221 -3.0632 -4.1333 21 7 2.2323 -1.1698 0.0001 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 0.5155 2.4267 -0.0014 26 1 3.1525 3.3212 1.2492 27 1 1.6352 4.2523 1.2485 28 1 1.7352 2.7145 2.1387 29 1 3.1537 3.3207 -1.2493 30 1 1.7371 2.7135 -2.1398 31 1 1.6363 4.2518 -1.2504 32 1 5.2314 -2.3984 0.0112 33 1 0.7868 -4.1825 0.5140 34 1 -0.0327 -2.6025 0.5138 35 1 -2.5546 -4.9138 -0.8502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259628162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:47 Heat of formation + Delta-G solvation = 51.208861 kcal Electronic energy + Delta-G solvation = -17802.064116 eV Core-core repulsion = 15119.530937 eV Total energy + Delta-G solvation = -2682.533180 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.63434 -38.92732 -35.86553 -35.52156 -32.61915 -31.64022 -29.01921 -28.39339 -28.01379 -25.47615 -23.98924 -23.07698 -20.81035 -20.03374 -19.04379 -18.62463 -16.99453 -16.69655 -16.63445 -15.94280 -15.28763 -14.82484 -14.72544 -14.57321 -14.22722 -14.10431 -13.87769 -13.61506 -13.13069 -13.08299 -12.80810 -12.59663 -12.48846 -12.39735 -12.32271 -12.02896 -11.97160 -11.64985 -11.55434 -11.23919 -10.87723 -10.65638 -10.02063 -8.36419 -8.05698 -6.39949 0.01227 0.23879 0.74475 1.21060 1.37358 1.40163 1.48346 1.69050 2.02767 2.38931 3.04805 3.47164 3.67567 3.85932 3.87797 4.07663 4.20994 4.26279 4.38073 4.49930 4.63859 4.73868 4.78209 4.80075 4.97273 5.00292 5.12743 5.17209 5.21739 5.35143 5.36982 5.38418 5.59357 5.63620 5.95726 6.20861 6.64710 6.97862 7.27915 8.82615 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.021953 B = 0.006439 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.141318 B = 4347.260512 C = 5017.729490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.057 3.943 3 C -0.173 4.173 4 C -0.020 4.020 5 C -0.143 4.143 6 C -0.144 4.144 7 S 0.154 5.846 8 C -0.125 4.125 9 C -0.007 4.007 10 N -0.496 5.496 11 C 0.242 3.758 12 C 0.108 3.892 13 C -0.528 4.528 14 H 0.041 0.959 15 C 0.021 3.979 16 N -0.919 5.919 17 Si 0.962 3.038 18 H -0.276 1.276 19 H -0.273 1.273 20 H -0.266 1.266 21 N -0.407 5.407 22 H 0.079 0.921 23 H 0.059 0.941 24 H 0.119 0.881 25 H 0.106 0.894 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.203 0.797 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.928 18.520 1.662 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.051 4.051 3 C -0.292 4.292 4 C -0.041 4.041 5 C -0.200 4.200 6 C -0.201 4.201 7 S 0.411 5.589 8 C -0.348 4.348 9 C -0.164 4.164 10 N -0.212 5.212 11 C -0.020 4.020 12 C 0.070 3.930 13 C -0.567 4.567 14 H 0.059 0.941 15 C -0.179 4.179 16 N -0.558 5.558 17 Si 0.786 3.214 18 H -0.201 1.201 19 H -0.198 1.198 20 H -0.191 1.191 21 N -0.085 5.085 22 H 0.097 0.903 23 H 0.078 0.922 24 H 0.137 0.863 25 H 0.123 0.877 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.219 0.781 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.993 18.423 1.721 19.780 hybrid contribution -1.449 -1.085 -0.762 1.964 sum 5.545 17.338 0.959 18.228 Atomic orbital electron populations 1.20797 0.85906 1.04584 1.04072 1.19422 0.96980 0.82822 1.05855 1.23984 0.95974 0.98935 1.10271 1.19940 1.00933 0.85276 0.97913 1.21884 1.01704 1.00846 0.95597 1.21882 1.01683 1.00861 0.95677 1.83654 1.03038 0.88316 1.83879 1.24921 0.87652 1.02630 1.19645 1.22247 0.99947 0.84691 1.09502 1.70122 0.98124 1.32528 1.20401 1.24482 0.97541 0.77043 1.02971 1.17624 0.83541 0.94001 0.97847 1.20967 1.04474 1.40061 0.91184 0.94094 1.25716 0.96058 0.94466 1.01679 1.70020 1.12877 1.40022 1.32853 0.85548 0.77659 0.78796 0.79362 1.20098 1.19758 1.19130 1.44142 1.06252 1.06627 1.51521 0.90271 0.92227 0.86317 0.87653 0.92467 0.89265 0.92746 0.92437 0.93221 0.89194 0.78057 0.95878 0.94691 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.05 9.53 71.24 0.68 -2.37 16 2 C 0.06 2.02 6.75 41.75 0.28 2.30 16 3 C -0.17 -4.78 5.00 25.78 0.13 -4.65 16 4 C -0.02 -0.37 3.10 -11.54 -0.04 -0.40 16 5 C -0.14 -2.12 9.11 71.98 0.66 -1.47 16 6 C -0.14 -2.29 9.11 71.98 0.66 -1.63 16 7 S 0.15 4.33 22.87 -56.49 -1.29 3.03 16 8 C -0.13 -4.84 7.83 83.58 0.65 -4.19 16 9 C -0.01 -0.28 11.93 83.94 1.00 0.72 16 10 N -0.50 -24.47 11.22 -185.47 -2.08 -26.55 16 11 C 0.24 12.19 7.34 137.34 1.01 13.20 16 12 C 0.11 5.97 5.32 29.10 0.15 6.13 16 13 C -0.53 -30.50 9.09 25.60 0.23 -30.26 16 14 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 15 C 0.02 1.17 5.46 84.65 0.46 1.63 16 16 N -0.92 -53.40 13.29 21.45 0.28 -53.11 16 17 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 N -0.41 -17.52 3.19 -329.50 -1.05 -18.57 16 22 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 23 H 0.06 2.29 5.67 -2.39 -0.01 2.28 16 24 H 0.12 2.70 6.51 -2.39 -0.02 2.68 16 25 H 0.11 1.74 6.10 -2.39 -0.01 1.73 16 26 H 0.06 0.86 7.99 -2.39 -0.02 0.84 16 27 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.92 7.99 -2.39 -0.02 0.90 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.98 8.14 -2.38 -0.02 0.97 16 32 H 0.20 6.43 8.06 -2.91 -0.02 6.40 16 33 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.91 5.75 -2.39 -0.01 1.90 16 35 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -68.47 303.96 4.86 -63.61 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.09 Total: 6.66 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 5.88 Total: -21.00 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -2.85 Total: -98.24 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.29 Total: 3.03 kcal Total: -68.47 4.86 -63.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.816 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds