Wall clock time and date at job start Mon Mar 30 2020 06:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47285 * 2 1 4 4 S 1.75820 * 125.09945 * 265.01667 * 3 2 1 5 5 C 1.76021 * 90.66822 * 180.02562 * 4 3 2 6 6 C 1.39138 * 143.12111 * 179.97438 * 5 4 3 7 7 N 1.32402 * 108.12456 * 179.97438 * 6 5 4 8 8 C 1.32962 * 109.52569 * 0.21856 * 7 6 5 9 9 C 1.39549 * 125.71022 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99593 * 183.18702 * 9 8 7 11 11 C 1.39883 * 119.99907 * 3.18954 * 9 8 7 12 12 N 1.30976 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99730 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47139 * 60.00245 * 13 11 9 15 15 H 1.48503 * 109.47065 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47361 * 300.00171 * 13 11 9 17 17 N 1.35806 * 109.34298 * 0.02562 * 5 4 3 18 18 C 1.31388 * 125.09338 * 85.06800 * 3 2 1 19 19 C 1.50697 * 121.79886 * 359.94030 * 18 3 2 20 20 C 1.52995 * 109.46979 * 119.66173 * 19 18 3 21 21 C 1.52996 * 109.46896 * 239.66032 * 19 18 3 22 22 H 1.08996 * 109.46884 * 184.92788 * 1 2 3 23 23 H 1.08993 * 109.47168 * 304.92818 * 1 2 3 24 24 H 1.09003 * 109.46864 * 64.92913 * 1 2 3 25 25 H 1.09009 * 109.47294 * 240.00334 * 2 1 3 26 26 H 1.08997 * 109.47844 * 120.00385 * 2 1 3 27 27 H 1.07998 * 125.93386 * 359.97438 * 6 5 4 28 28 H 0.97001 * 119.99954 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.47303 * 359.66012 * 19 18 3 30 30 H 1.09008 * 109.47178 * 50.68412 * 20 19 18 31 31 H 1.09004 * 109.47256 * 170.67908 * 20 19 18 32 32 H 1.08992 * 109.47609 * 290.68473 * 20 19 18 33 33 H 1.09003 * 109.47388 * 69.05808 * 21 19 18 34 34 H 1.09004 * 109.47165 * 189.05111 * 21 19 18 35 35 H 1.09003 * 109.47392 * 309.05408 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.4872 2.3323 -1.4330 5 6 2.8904 3.7296 -0.4415 6 6 3.3595 5.0382 -0.5006 7 7 3.4127 5.5129 0.7343 8 6 3.0070 4.5776 1.5877 9 6 2.9298 4.7181 2.9740 10 1 2.6350 3.8786 3.5862 11 6 3.2342 5.9462 3.5705 12 7 3.5912 6.9643 2.8279 13 14 3.1303 6.1344 5.4261 14 1 4.0652 5.1795 6.0737 15 1 3.4989 7.5224 5.8042 16 1 1.7435 5.8513 5.8754 17 7 2.6659 3.4341 0.8649 18 6 2.1971 2.1638 1.0711 19 6 1.8863 1.6464 2.4519 20 6 3.1546 1.6809 3.3068 21 6 0.8128 2.5256 3.0963 22 1 -0.3633 -1.0238 0.0883 23 1 -0.3633 0.5883 0.8425 24 1 -0.3633 0.4355 -0.9309 25 1 1.8934 -0.5138 -0.8901 26 1 1.8935 -0.5139 0.8899 27 1 3.6327 5.5736 -1.3979 28 1 3.8027 7.8158 3.2416 29 1 1.5227 0.6211 2.3824 30 1 3.6099 2.6692 3.2418 31 1 2.8993 1.4661 4.3445 32 1 3.8584 0.9322 2.9433 33 1 -0.1362 2.3768 2.5812 34 1 0.7027 2.2540 4.1462 35 1 1.1070 3.5725 3.0207 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799442.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:26 Heat of formation + Delta-G solvation = 74.218924 kcal Electronic energy + Delta-G solvation = -18513.935723 eV Core-core repulsion = 15832.400334 eV Total energy + Delta-G solvation = -2681.535389 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.88764 -37.08885 -34.21706 -33.32154 -32.37623 -29.02922 -27.76008 -26.65231 -25.27962 -23.56491 -22.02591 -20.86115 -19.91394 -18.37946 -16.91976 -16.08644 -15.49670 -14.80628 -14.53217 -14.16436 -13.79764 -13.55668 -13.03616 -12.83540 -12.75026 -12.24220 -12.22718 -11.69230 -11.64925 -11.32988 -11.27305 -11.08973 -10.94276 -10.85310 -10.81831 -10.39350 -10.17855 -9.91116 -9.50217 -9.29000 -8.66427 -8.23873 -7.71282 -6.66648 -6.48204 -4.33982 2.12479 2.52557 2.97168 2.97408 3.03588 3.05042 3.56356 3.81826 4.13713 4.41839 5.08335 5.29263 5.36877 5.38742 5.41719 5.52674 5.64321 5.82083 5.98304 6.02509 6.13514 6.15617 6.21208 6.25663 6.34751 6.39013 6.42187 6.58797 6.74226 6.82158 6.94661 7.06181 7.33576 7.81061 7.89318 8.17413 8.66980 9.00926 9.86738 10.24927 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.008457 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.577392 B = 3309.932521 C = 4232.792132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 C -0.243 4.243 4 S 0.019 5.981 5 C -0.203 4.203 6 C 0.052 3.948 7 N -0.492 5.492 8 C 0.392 3.608 9 C -0.451 4.451 10 H 0.109 0.891 11 C 0.076 3.924 12 N -0.729 5.729 13 Si 0.911 3.089 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.263 1.263 17 N -0.439 5.439 18 C 0.144 3.856 19 C -0.034 4.034 20 C -0.171 4.171 21 C -0.170 4.170 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.278 0.722 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 -9.508 0.885 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 C -0.362 4.362 4 S 0.272 5.728 5 C -0.423 4.423 6 C -0.110 4.110 7 N -0.212 5.212 8 C 0.153 3.847 9 C -0.490 4.490 10 H 0.127 0.873 11 C -0.150 4.150 12 N -0.352 5.352 13 Si 0.735 3.265 14 H -0.188 1.188 15 H -0.200 1.200 16 H -0.188 1.188 17 N -0.122 5.122 18 C 0.032 3.968 19 C -0.055 4.055 20 C -0.228 4.228 21 C -0.228 4.228 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.164 0.836 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.437 -8.756 -0.288 9.411 hybrid contribution -0.290 -0.353 1.764 1.822 sum -3.728 -9.109 1.476 9.952 Atomic orbital electron populations 1.21801 0.95231 1.00945 1.02447 1.19788 0.95410 0.89819 1.02023 1.22902 1.17714 1.01189 0.94439 1.83372 1.77409 1.04381 1.07596 1.23893 1.28897 1.02137 0.87367 1.22117 1.03253 0.88675 0.96917 1.71239 1.26777 1.25647 0.97548 1.20475 0.94124 0.76896 0.93167 1.18699 1.43505 0.98580 0.88171 0.87344 1.25799 0.93756 0.95100 1.00357 1.70120 1.27136 1.01215 1.36759 0.86308 0.79897 0.78524 0.81805 1.18768 1.20003 1.18774 1.43805 1.51244 1.09974 1.07221 1.18707 0.97644 0.84323 0.96153 1.19970 0.97064 0.99089 0.89387 1.22291 0.96868 1.05209 0.98422 1.22291 0.97251 1.03879 0.99333 0.92821 0.92489 0.92595 0.91447 0.91006 0.83591 0.91134 0.90012 0.88439 0.92469 0.93399 0.93460 0.92548 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.90 37.16 0.37 -1.50 16 2 C -0.03 -0.44 5.70 -27.88 -0.16 -0.60 16 3 C -0.24 -4.59 5.68 -36.12 -0.21 -4.79 16 4 S 0.02 0.39 23.35 -107.50 -2.51 -2.12 16 5 C -0.20 -4.99 7.93 -15.46 -0.12 -5.11 16 6 C 0.05 1.32 11.99 -16.97 -0.20 1.12 16 7 N -0.49 -13.90 9.32 -11.72 -0.11 -14.01 16 8 C 0.39 10.52 6.98 -153.88 -1.07 9.45 16 9 C -0.45 -11.28 6.05 -38.48 -0.23 -11.51 16 10 H 0.11 2.45 3.22 -52.49 -0.17 2.28 16 11 C 0.08 1.85 5.49 -17.30 -0.10 1.76 16 12 N -0.73 -19.15 11.88 55.55 0.66 -18.49 16 13 Si 0.91 17.85 29.56 -169.99 -5.02 12.83 16 14 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 15 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 16 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 17 N -0.44 -10.75 3.05 -57.18 -0.17 -10.92 16 18 C 0.14 2.99 5.32 -82.12 -0.44 2.55 16 19 C -0.03 -0.59 2.89 -91.78 -0.27 -0.86 16 20 C -0.17 -2.96 8.50 37.16 0.32 -2.64 16 21 C -0.17 -2.97 8.53 37.16 0.32 -2.65 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 26 H 0.07 0.94 6.86 -51.93 -0.36 0.58 16 27 H 0.15 3.29 8.06 -52.49 -0.42 2.86 16 28 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 29 H 0.08 1.21 6.13 -51.93 -0.32 0.89 16 30 H 0.10 2.02 4.40 -51.92 -0.23 1.79 16 31 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.10 2.07 4.37 -51.93 -0.23 1.85 16 LS Contribution 289.75 15.07 4.37 4.37 Total: -1.00 -29.14 289.75 -8.82 -37.95 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.23 Total: 5.18 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -1.79 Total: -14.79 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.38 Total: -43.42 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.02 Total: 12.83 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -2.51 Total: -2.12 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.14 -8.82 -37.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799442.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.171 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds