Wall clock time and date at job start Mon Mar 30 2020 06:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47285 * 2 1 4 4 S 1.75820 * 125.09945 * 265.01667 * 3 2 1 5 5 C 1.76021 * 90.66822 * 180.02562 * 4 3 2 6 6 C 1.39138 * 143.12111 * 179.97438 * 5 4 3 7 7 N 1.32402 * 108.12456 * 179.97438 * 6 5 4 8 8 C 1.32962 * 109.52569 * 0.21856 * 7 6 5 9 9 C 1.39549 * 125.71022 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99593 * 183.18702 * 9 8 7 11 11 C 1.39883 * 119.99907 * 3.18954 * 9 8 7 12 12 N 1.30976 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99730 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47139 * 60.00245 * 13 11 9 15 15 H 1.48503 * 109.47065 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47361 * 300.00171 * 13 11 9 17 17 N 1.35806 * 109.34298 * 0.02562 * 5 4 3 18 18 C 1.31388 * 125.09338 * 85.06800 * 3 2 1 19 19 C 1.50697 * 121.79886 * 359.94030 * 18 3 2 20 20 C 1.52995 * 109.46979 * 119.66173 * 19 18 3 21 21 C 1.52996 * 109.46896 * 239.66032 * 19 18 3 22 22 H 1.08996 * 109.46884 * 184.92788 * 1 2 3 23 23 H 1.08993 * 109.47168 * 304.92818 * 1 2 3 24 24 H 1.09003 * 109.46864 * 64.92913 * 1 2 3 25 25 H 1.09009 * 109.47294 * 240.00334 * 2 1 3 26 26 H 1.08997 * 109.47844 * 120.00385 * 2 1 3 27 27 H 1.07998 * 125.93386 * 359.97438 * 6 5 4 28 28 H 0.97001 * 119.99954 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.47303 * 359.66012 * 19 18 3 30 30 H 1.09008 * 109.47178 * 50.68412 * 20 19 18 31 31 H 1.09004 * 109.47256 * 170.67908 * 20 19 18 32 32 H 1.08992 * 109.47609 * 290.68473 * 20 19 18 33 33 H 1.09003 * 109.47388 * 69.05808 * 21 19 18 34 34 H 1.09004 * 109.47165 * 189.05111 * 21 19 18 35 35 H 1.09003 * 109.47392 * 309.05408 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.4872 2.3323 -1.4330 5 6 2.8904 3.7296 -0.4415 6 6 3.3595 5.0382 -0.5006 7 7 3.4127 5.5129 0.7343 8 6 3.0070 4.5776 1.5877 9 6 2.9298 4.7181 2.9740 10 1 2.6350 3.8786 3.5862 11 6 3.2342 5.9462 3.5705 12 7 3.5912 6.9643 2.8279 13 14 3.1303 6.1344 5.4261 14 1 4.0652 5.1795 6.0737 15 1 3.4989 7.5224 5.8042 16 1 1.7435 5.8513 5.8754 17 7 2.6659 3.4341 0.8649 18 6 2.1971 2.1638 1.0711 19 6 1.8863 1.6464 2.4519 20 6 3.1546 1.6809 3.3068 21 6 0.8128 2.5256 3.0963 22 1 -0.3633 -1.0238 0.0883 23 1 -0.3633 0.5883 0.8425 24 1 -0.3633 0.4355 -0.9309 25 1 1.8934 -0.5138 -0.8901 26 1 1.8935 -0.5139 0.8899 27 1 3.6327 5.5736 -1.3979 28 1 3.8027 7.8158 3.2416 29 1 1.5227 0.6211 2.3824 30 1 3.6099 2.6692 3.2418 31 1 2.8993 1.4661 4.3445 32 1 3.8584 0.9322 2.9433 33 1 -0.1362 2.3768 2.5812 34 1 0.7027 2.2540 4.1462 35 1 1.1070 3.5725 3.0207 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799442.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:26 Heat of formation + Delta-G solvation = 58.857019 kcal Electronic energy + Delta-G solvation = -18514.601865 eV Core-core repulsion = 15832.400334 eV Total energy + Delta-G solvation = -2682.201531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.66988 -38.64575 -35.90655 -34.67387 -34.03776 -30.83175 -29.30994 -27.99281 -27.12573 -24.91109 -23.52936 -22.54802 -21.68837 -20.03180 -18.48421 -17.92173 -17.10758 -16.31971 -16.18496 -15.75391 -15.09426 -14.92273 -14.72583 -14.23938 -14.14374 -14.02399 -13.45589 -13.32948 -13.09635 -12.80564 -12.71527 -12.50926 -12.36269 -12.17915 -12.04441 -11.94258 -11.78158 -11.41106 -11.07236 -11.01514 -10.43200 -10.18707 -9.48772 -8.47430 -8.26351 -6.20082 0.46949 0.83626 1.25840 1.42183 1.43574 1.55285 1.78719 2.18165 2.47313 2.53353 3.49042 3.69905 4.01624 4.17440 4.23121 4.25708 4.35048 4.50246 4.54884 4.69704 4.83309 4.84790 4.91057 4.97999 5.01309 5.05283 5.10304 5.16721 5.28389 5.38760 5.44811 5.52233 5.65626 6.00636 6.12210 6.32671 6.82293 7.17748 7.96035 8.47644 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.008457 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.577392 B = 3309.932521 C = 4232.792132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.032 4.032 3 C -0.225 4.225 4 S 0.047 5.953 5 C -0.216 4.216 6 C 0.012 3.988 7 N -0.535 5.535 8 C 0.364 3.636 9 C -0.464 4.464 10 H 0.130 0.870 11 C 0.027 3.973 12 N -0.780 5.780 13 Si 0.986 3.014 14 H -0.252 1.252 15 H -0.274 1.274 16 H -0.251 1.251 17 N -0.444 5.444 18 C 0.104 3.896 19 C -0.029 4.029 20 C -0.169 4.169 21 C -0.168 4.168 22 H 0.086 0.914 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.160 0.840 28 H 0.280 0.720 29 H 0.117 0.883 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.051 -12.792 2.307 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.345 4.345 4 S 0.301 5.699 5 C -0.436 4.436 6 C -0.149 4.149 7 N -0.256 5.256 8 C 0.124 3.876 9 C -0.503 4.503 10 H 0.147 0.853 11 C -0.194 4.194 12 N -0.405 5.405 13 Si 0.806 3.194 14 H -0.175 1.175 15 H -0.198 1.198 16 H -0.174 1.174 17 N -0.127 5.127 18 C -0.006 4.006 19 C -0.049 4.049 20 C -0.226 4.226 21 C -0.225 4.225 22 H 0.105 0.895 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.177 0.823 28 H 0.091 0.909 29 H 0.135 0.865 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.713 -12.088 1.107 13.021 hybrid contribution 0.068 0.524 1.140 1.256 sum -4.644 -11.565 2.247 12.663 Atomic orbital electron populations 1.21778 0.93688 1.02893 1.01693 1.20042 0.96558 0.86618 1.03927 1.23674 1.15054 1.02879 0.92855 1.83209 1.76707 1.02331 1.07687 1.24482 1.27159 1.03056 0.88936 1.22433 1.05410 0.90011 0.97022 1.71123 1.28097 1.27564 0.98794 1.20841 0.95090 0.77723 0.93962 1.19207 1.43427 0.99678 0.87953 0.85265 1.26906 0.92612 0.94340 1.05548 1.70271 1.29031 1.01995 1.39222 0.85182 0.80551 0.78608 0.75102 1.17538 1.19829 1.17438 1.43927 1.51167 1.10978 1.06638 1.19369 0.99286 0.83282 0.98659 1.20100 0.96978 1.00518 0.87331 1.22238 0.96893 1.03147 1.00286 1.22230 0.97439 1.01529 1.01296 0.89499 0.93234 0.93497 0.89923 0.88668 0.82254 0.90944 0.86496 0.92256 0.89644 0.92618 0.92844 0.89739 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.90 71.98 0.71 -2.30 16 2 C -0.03 -0.77 5.70 29.85 0.17 -0.60 16 3 C -0.23 -7.97 5.68 25.27 0.14 -7.83 16 4 S 0.05 1.86 23.35 -56.49 -1.32 0.54 16 5 C -0.22 -10.84 7.93 84.29 0.67 -10.18 16 6 C 0.01 0.64 11.99 84.82 1.02 1.65 16 7 N -0.54 -32.00 9.32 -190.98 -1.78 -33.78 16 8 C 0.36 20.35 6.98 132.82 0.93 21.28 16 9 C -0.46 -23.87 6.05 22.98 0.14 -23.73 16 10 H 0.13 5.85 3.22 -2.91 -0.01 5.84 16 11 C 0.03 1.35 5.49 85.22 0.47 1.82 16 12 N -0.78 -43.04 11.88 21.83 0.26 -42.78 16 13 Si 0.99 36.74 29.56 68.60 2.03 38.77 16 14 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 15 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 16 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 17 N -0.44 -22.12 3.05 -334.82 -1.02 -23.14 16 18 C 0.10 4.19 5.32 41.34 0.22 4.41 16 19 C -0.03 -0.91 2.89 -11.54 -0.03 -0.94 16 20 C -0.17 -5.43 8.50 71.98 0.61 -4.82 16 21 C -0.17 -5.47 8.53 71.98 0.61 -4.85 16 22 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.10 1.94 6.86 -2.39 -0.02 1.93 16 27 H 0.16 7.67 8.06 -2.91 -0.02 7.65 16 28 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 29 H 0.12 2.89 6.13 -2.39 -0.01 2.88 16 30 H 0.06 2.42 4.40 -2.38 -0.01 2.41 16 31 H 0.08 2.22 8.05 -2.39 -0.02 2.20 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 2.22 8.05 -2.39 -0.02 2.20 16 35 H 0.06 2.51 4.37 -2.39 -0.01 2.50 16 Total: -1.00 -67.43 289.75 4.93 -62.49 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 1.11 Total: 23.99 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 5.66 Total: -26.10 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -2.54 Total: -99.70 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.54 kcal Total: -67.43 4.93 -62.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799442.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.351 kcal (2) G-P(sol) polarization free energy of solvation -67.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds