Wall clock time and date at job start Mon Mar 30 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38370 * 120.00544 * 2 1 4 4 Cl 1.73602 * 120.01439 * 359.97438 * 3 2 1 5 5 C 1.38332 * 119.97385 * 180.23279 * 3 2 1 6 6 C 1.38231 * 119.98453 * 359.77736 * 5 3 2 7 7 C 1.38222 * 120.01487 * 359.97438 * 6 5 3 8 8 C 1.38194 * 120.00602 * 179.75560 * 2 1 3 9 9 C 1.50697 * 119.99221 * 0.02562 * 8 2 1 10 10 C 1.53001 * 109.47143 * 84.72745 * 9 8 2 11 11 C 1.52994 * 109.47007 * 185.10894 * 10 9 8 12 12 C 1.50706 * 115.55400 * 320.19750 * 11 10 9 13 13 H 1.08002 * 119.99487 * 99.44022 * 12 11 10 14 14 C 1.37873 * 120.00011 * 279.44479 * 12 11 10 15 15 N 1.31514 * 119.99785 * 355.00919 * 14 12 11 16 16 Si 1.86794 * 119.99876 * 175.01409 * 14 12 11 17 17 H 1.48503 * 109.47243 * 90.00040 * 16 14 12 18 18 H 1.48498 * 109.47276 * 209.99773 * 16 14 12 19 19 H 1.48501 * 109.47602 * 329.99620 * 16 14 12 20 20 C 1.53004 * 117.50150 * 174.52640 * 11 10 9 21 21 C 1.53000 * 60.03202 * 252.50155 * 20 11 10 22 22 H 1.09001 * 109.47061 * 270.24677 * 1 2 3 23 23 H 1.09001 * 109.47458 * 30.25064 * 1 2 3 24 24 H 1.08999 * 109.47009 * 150.24825 * 1 2 3 25 25 H 1.08002 * 120.00634 * 179.74947 * 5 3 2 26 26 H 1.08003 * 119.99449 * 179.97438 * 6 5 3 27 27 H 1.07999 * 119.98937 * 180.02562 * 7 6 5 28 28 H 1.08998 * 109.47388 * 324.72207 * 9 8 2 29 29 H 1.09006 * 109.46878 * 204.72761 * 9 8 2 30 30 H 1.09005 * 109.46969 * 65.11054 * 10 9 8 31 31 H 1.08999 * 109.47253 * 305.11124 * 10 9 8 32 32 H 0.97002 * 119.99400 * 184.99857 * 15 14 12 33 33 H 1.09006 * 117.49214 * 0.02562 * 20 11 10 34 34 H 1.08993 * 117.50070 * 144.99941 * 20 11 10 35 35 H 1.09001 * 117.49920 * 107.49903 * 21 20 11 36 36 H 1.09004 * 117.49683 * 252.51906 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1983 0.0000 4 17 1.3315 2.7020 -0.0007 5 6 3.5823 1.1975 -0.0049 6 6 4.2725 -0.0002 -0.0051 7 6 3.5807 -1.1968 0.0001 8 6 2.1981 -1.1967 0.0051 9 6 1.4446 -2.5018 0.0101 10 6 1.0753 -2.8830 -1.4249 11 6 0.2021 -4.1391 -1.4103 12 6 0.6008 -5.1964 -0.4130 13 1 0.0784 -5.2745 0.5290 14 6 1.6324 -6.0638 -0.7033 15 7 2.2034 -6.0335 -1.8876 16 14 2.2189 -7.2821 0.5856 17 1 1.4506 -8.5464 0.4575 18 1 3.6639 -7.5585 0.3842 19 1 2.0085 -6.7099 1.9397 20 6 -0.3804 -4.6103 -2.7443 21 6 -1.2914 -3.9655 -1.6977 22 1 -0.3633 0.0044 1.0277 23 1 -0.3634 0.8877 -0.5177 24 1 -0.3633 -0.8922 -0.5100 25 1 4.1229 2.1325 -0.0090 26 1 5.3525 -0.0010 -0.0093 27 1 4.1204 -2.1323 0.0004 28 1 0.5362 -2.3946 0.6028 29 1 2.0712 -3.2814 0.4434 30 1 1.9841 -3.0788 -1.9941 31 1 0.5257 -2.0638 -1.8885 32 1 2.8790 -6.6907 -2.1171 33 1 -0.1411 -4.0254 -3.6325 34 1 -0.4753 -5.6847 -2.9006 35 1 -1.6517 -2.9563 -1.8973 36 1 -1.9853 -4.6160 -1.1652 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259824366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:47 Heat of formation + Delta-G solvation = 18.082731 kcal Electronic energy + Delta-G solvation = -17597.360780 eV Core-core repulsion = 14879.054686 eV Total energy + Delta-G solvation = -2718.306094 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.48561 -36.83849 -36.28595 -33.40659 -31.92418 -31.79870 -28.79842 -26.72139 -25.42055 -23.50645 -21.65582 -21.03472 -20.24088 -18.96723 -16.32478 -15.84644 -15.76598 -14.98767 -14.61099 -14.07718 -13.76957 -13.43337 -13.16809 -12.87027 -12.43285 -12.22979 -11.99529 -11.72967 -11.58732 -11.33324 -10.98239 -10.92877 -10.88116 -10.74526 -10.58185 -10.37891 -10.21620 -9.87593 -9.26734 -8.87569 -8.47708 -8.42286 -8.28425 -7.88860 -6.01366 -4.07742 1.39269 1.50503 2.26654 3.27077 3.35144 3.37773 3.84468 4.39230 4.96844 4.98077 5.25746 5.27233 5.38957 5.42907 5.54189 5.77373 5.85057 5.89751 5.99909 6.17782 6.28215 6.33869 6.37159 6.42304 6.48333 6.60844 6.72510 6.75849 6.82553 6.90243 7.07316 7.17394 7.26932 7.33137 7.55216 7.68872 7.90114 8.47393 8.93201 9.56607 11.06325 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.024233 B = 0.005525 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.162583 B = 5066.444473 C = 5750.706390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C -0.037 4.037 4 Cl -0.083 7.083 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.110 4.110 8 C -0.053 4.053 9 C -0.065 4.065 10 C -0.061 4.061 11 C 0.046 3.954 12 C -0.491 4.491 13 H 0.058 0.942 14 C 0.073 3.927 15 N -0.878 5.878 16 Si 0.882 3.118 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.160 4.160 21 C -0.216 4.216 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.259 0.741 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 12.658 3.155 13.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.078 4.078 3 C -0.063 4.063 4 Cl -0.055 7.055 5 C -0.145 4.145 6 C -0.133 4.133 7 C -0.128 4.128 8 C -0.053 4.053 9 C -0.102 4.102 10 C -0.099 4.099 11 C 0.045 3.955 12 C -0.529 4.529 13 H 0.076 0.924 14 C -0.130 4.130 15 N -0.514 5.514 16 Si 0.710 3.290 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.198 4.198 21 C -0.253 4.253 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.148 0.852 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.426 12.747 3.062 13.187 hybrid contribution 0.398 -0.598 0.501 0.876 sum 1.824 12.149 3.563 12.792 Atomic orbital electron populations 1.20945 0.90554 1.03767 1.02689 1.19674 0.96758 0.90832 1.00494 1.20772 0.92233 0.86101 1.07198 1.98325 1.77320 1.32740 1.97070 1.20872 0.91858 0.98844 1.02887 1.21035 0.99776 0.91819 1.00690 1.21285 0.94011 0.98378 0.99103 1.20288 0.93778 0.95402 0.95842 1.20561 0.99294 0.90988 0.99334 1.21022 0.99635 0.95467 0.93786 1.18911 0.87709 0.93874 0.94971 1.20405 1.15977 1.14688 1.01838 0.92355 1.24939 0.95998 0.96933 0.95170 1.70001 1.27005 1.34814 1.19617 0.86751 0.78084 0.81757 0.82441 1.20761 1.21222 1.19729 1.22501 1.05135 0.99162 0.93001 1.23046 0.96345 0.99214 1.06700 0.91036 0.91472 0.89806 0.85693 0.85631 0.85245 0.91420 0.89636 0.92198 0.95034 0.93126 0.92259 0.90243 0.91925 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.82 36.01 0.32 -1.44 16 2 C -0.08 -1.20 5.88 -104.59 -0.62 -1.81 16 3 C -0.04 -0.53 6.31 -39.50 -0.25 -0.78 16 4 Cl -0.08 -1.07 27.30 -51.86 -1.42 -2.48 16 5 C -0.13 -1.67 9.83 -39.55 -0.39 -2.06 16 6 C -0.11 -1.54 10.05 -39.59 -0.40 -1.94 16 7 C -0.11 -1.71 9.68 -39.58 -0.38 -2.09 16 8 C -0.05 -0.89 5.13 -104.63 -0.54 -1.43 16 9 C -0.06 -1.23 4.01 -27.88 -0.11 -1.34 16 10 C -0.06 -1.30 5.07 -26.73 -0.14 -1.44 16 11 C 0.05 1.08 1.65 -155.62 -0.26 0.82 16 12 C -0.49 -12.67 7.31 -34.44 -0.25 -12.92 16 13 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 14 C 0.07 1.91 5.44 -17.82 -0.10 1.81 16 15 N -0.88 -24.07 12.86 55.43 0.71 -23.36 16 16 Si 0.88 20.36 29.54 -169.99 -5.02 15.34 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C -0.16 -3.75 9.43 -26.73 -0.25 -4.01 16 21 C -0.22 -4.62 9.89 -26.69 -0.26 -4.89 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.07 0.88 6.91 -51.93 -0.36 0.52 16 24 H 0.08 1.28 5.47 -51.93 -0.28 0.99 16 25 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 26 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 27 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 28 H 0.07 1.26 7.00 -51.93 -0.36 0.90 16 29 H 0.09 1.79 7.34 -51.93 -0.38 1.41 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.03 0.62 6.81 -51.93 -0.35 0.27 16 32 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 35 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 312.17 15.07 4.70 4.70 Total: -1.00 -26.69 312.17 -9.73 -36.43 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.09 Total: 2.88 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: -3.62 Total: -33.51 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.71 Total: -23.36 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.42 Total: -2.48 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.69 -9.73 -36.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.509 kcal (2) G-P(sol) polarization free energy of solvation -26.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds