Wall clock time and date at job start Mon Mar 30 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38370 * 120.00544 * 2 1 4 4 Cl 1.73602 * 120.01439 * 359.97438 * 3 2 1 5 5 C 1.38332 * 119.97385 * 180.23279 * 3 2 1 6 6 C 1.38231 * 119.98453 * 359.77736 * 5 3 2 7 7 C 1.38222 * 120.01487 * 359.97438 * 6 5 3 8 8 C 1.38194 * 120.00602 * 179.75560 * 2 1 3 9 9 C 1.50697 * 119.99221 * 0.02562 * 8 2 1 10 10 C 1.53001 * 109.47143 * 84.72745 * 9 8 2 11 11 C 1.52994 * 109.47007 * 185.10894 * 10 9 8 12 12 C 1.50706 * 115.55400 * 320.19750 * 11 10 9 13 13 H 1.08002 * 119.99487 * 99.44022 * 12 11 10 14 14 C 1.37873 * 120.00011 * 279.44479 * 12 11 10 15 15 N 1.31514 * 119.99785 * 355.00919 * 14 12 11 16 16 Si 1.86794 * 119.99876 * 175.01409 * 14 12 11 17 17 H 1.48503 * 109.47243 * 90.00040 * 16 14 12 18 18 H 1.48498 * 109.47276 * 209.99773 * 16 14 12 19 19 H 1.48501 * 109.47602 * 329.99620 * 16 14 12 20 20 C 1.53004 * 117.50150 * 174.52640 * 11 10 9 21 21 C 1.53000 * 60.03202 * 252.50155 * 20 11 10 22 22 H 1.09001 * 109.47061 * 270.24677 * 1 2 3 23 23 H 1.09001 * 109.47458 * 30.25064 * 1 2 3 24 24 H 1.08999 * 109.47009 * 150.24825 * 1 2 3 25 25 H 1.08002 * 120.00634 * 179.74947 * 5 3 2 26 26 H 1.08003 * 119.99449 * 179.97438 * 6 5 3 27 27 H 1.07999 * 119.98937 * 180.02562 * 7 6 5 28 28 H 1.08998 * 109.47388 * 324.72207 * 9 8 2 29 29 H 1.09006 * 109.46878 * 204.72761 * 9 8 2 30 30 H 1.09005 * 109.46969 * 65.11054 * 10 9 8 31 31 H 1.08999 * 109.47253 * 305.11124 * 10 9 8 32 32 H 0.97002 * 119.99400 * 184.99857 * 15 14 12 33 33 H 1.09006 * 117.49214 * 0.02562 * 20 11 10 34 34 H 1.08993 * 117.50070 * 144.99941 * 20 11 10 35 35 H 1.09001 * 117.49920 * 107.49903 * 21 20 11 36 36 H 1.09004 * 117.49683 * 252.51906 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1983 0.0000 4 17 1.3315 2.7020 -0.0007 5 6 3.5823 1.1975 -0.0049 6 6 4.2725 -0.0002 -0.0051 7 6 3.5807 -1.1968 0.0001 8 6 2.1981 -1.1967 0.0051 9 6 1.4446 -2.5018 0.0101 10 6 1.0753 -2.8830 -1.4249 11 6 0.2021 -4.1391 -1.4103 12 6 0.6008 -5.1964 -0.4130 13 1 0.0784 -5.2745 0.5290 14 6 1.6324 -6.0638 -0.7033 15 7 2.2034 -6.0335 -1.8876 16 14 2.2189 -7.2821 0.5856 17 1 1.4506 -8.5464 0.4575 18 1 3.6639 -7.5585 0.3842 19 1 2.0085 -6.7099 1.9397 20 6 -0.3804 -4.6103 -2.7443 21 6 -1.2914 -3.9655 -1.6977 22 1 -0.3633 0.0044 1.0277 23 1 -0.3634 0.8877 -0.5177 24 1 -0.3633 -0.8922 -0.5100 25 1 4.1229 2.1325 -0.0090 26 1 5.3525 -0.0010 -0.0093 27 1 4.1204 -2.1323 0.0004 28 1 0.5362 -2.3946 0.6028 29 1 2.0712 -3.2814 0.4434 30 1 1.9841 -3.0788 -1.9941 31 1 0.5257 -2.0638 -1.8885 32 1 2.8790 -6.6907 -2.1171 33 1 -0.1411 -4.0254 -3.6325 34 1 -0.4753 -5.6847 -2.9006 35 1 -1.6517 -2.9563 -1.8973 36 1 -1.9853 -4.6160 -1.1652 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259824366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:47 Heat of formation + Delta-G solvation = 8.015649 kcal Electronic energy + Delta-G solvation = -17597.797322 eV Core-core repulsion = 14879.054686 eV Total energy + Delta-G solvation = -2718.742635 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.098 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.67063 -38.55073 -37.40170 -34.70116 -33.93242 -33.02366 -30.18534 -27.88099 -27.39529 -24.97329 -22.89417 -22.79229 -21.49440 -20.85447 -17.78069 -17.42005 -17.02073 -16.54828 -16.13750 -15.67942 -15.17325 -14.85831 -14.55084 -14.23616 -13.95102 -13.34640 -13.31132 -13.23518 -13.08223 -12.84716 -12.80058 -12.53359 -12.34904 -12.17610 -11.98673 -11.97355 -11.64887 -11.54530 -11.03422 -10.80173 -10.33916 -9.83922 -9.53705 -9.46175 -8.03513 -6.14148 0.25063 0.36571 1.18839 1.41548 1.45016 1.52919 2.45503 2.69370 3.24915 3.55891 3.82940 3.89609 4.09974 4.20389 4.38203 4.47534 4.52615 4.62305 4.68715 4.76082 4.79115 4.84013 4.89146 5.03147 5.06591 5.16007 5.21853 5.29933 5.33164 5.42312 5.47806 5.61126 5.69055 5.78599 5.80469 5.94319 5.98403 6.49122 6.92187 7.52512 9.03908 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.024233 B = 0.005525 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.162583 B = 5066.444473 C = 5750.706390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.085 4.085 3 C -0.045 4.045 4 Cl -0.068 7.068 5 C -0.119 4.119 6 C -0.109 4.109 7 C -0.125 4.125 8 C -0.074 4.074 9 C -0.050 4.050 10 C -0.048 4.048 11 C 0.020 3.980 12 C -0.497 4.497 13 H 0.052 0.948 14 C 0.030 3.970 15 N -0.907 5.907 16 Si 0.937 3.063 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.266 1.266 20 C -0.171 4.171 21 C -0.190 4.190 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.153 0.847 26 H 0.156 0.844 27 H 0.122 0.878 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.046 0.954 32 H 0.257 0.743 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 14.555 3.919 15.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.086 4.086 3 C -0.071 4.071 4 Cl -0.039 7.039 5 C -0.137 4.137 6 C -0.127 4.127 7 C -0.143 4.143 8 C -0.075 4.075 9 C -0.087 4.087 10 C -0.085 4.085 11 C 0.020 3.980 12 C -0.535 4.535 13 H 0.070 0.930 14 C -0.170 4.170 15 N -0.546 5.546 16 Si 0.764 3.236 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.209 4.209 21 C -0.227 4.227 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.171 0.829 26 H 0.173 0.827 27 H 0.140 0.860 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.572 14.648 3.837 15.223 hybrid contribution 0.331 -1.116 0.258 1.192 sum 1.903 13.532 4.095 14.265 Atomic orbital electron populations 1.20939 0.89880 1.03620 1.03293 1.19771 0.97409 0.90860 1.00584 1.20909 0.92931 0.86379 1.06919 1.98330 1.77113 1.31472 1.96976 1.21245 0.91574 0.99917 1.01010 1.21332 1.01271 0.90858 0.99233 1.21380 0.93796 0.99300 0.99835 1.20086 0.94285 0.94730 0.98369 1.20267 0.99091 0.91713 0.97617 1.20827 0.97901 0.94819 0.94985 1.19108 0.89777 0.94530 0.94582 1.20639 1.15756 1.15168 1.01975 0.92973 1.25543 0.96219 0.98628 0.96619 1.70110 1.27655 1.35621 1.21165 0.85874 0.77423 0.79737 0.80605 1.20699 1.21192 1.19054 1.22402 1.06909 0.97939 0.93630 1.23051 0.94930 1.00333 1.04384 0.90090 0.90388 0.91039 0.82888 0.82651 0.85984 0.91263 0.92350 0.95174 0.93589 0.93369 0.91521 0.92769 0.89118 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 8.82 71.24 0.63 -2.62 16 2 C -0.09 -2.55 5.88 -19.84 -0.12 -2.66 16 3 C -0.04 -1.19 6.31 22.32 0.14 -1.05 16 4 Cl -0.07 -1.55 27.30 -2.72 -0.07 -1.63 16 5 C -0.12 -2.79 9.83 22.29 0.22 -2.57 16 6 C -0.11 -2.66 10.05 22.26 0.22 -2.43 16 7 C -0.12 -3.83 9.68 22.27 0.22 -3.62 16 8 C -0.07 -2.48 5.13 -19.87 -0.10 -2.58 16 9 C -0.05 -1.92 4.01 29.85 0.12 -1.80 16 10 C -0.05 -2.04 5.07 30.59 0.16 -1.88 16 11 C 0.02 0.97 1.65 -52.90 -0.09 0.88 16 12 C -0.50 -26.04 7.31 25.60 0.19 -25.85 16 13 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 14 C 0.03 1.60 5.44 84.65 0.46 2.06 16 15 N -0.91 -51.02 12.86 21.45 0.28 -50.74 16 16 Si 0.94 42.36 29.54 68.60 2.03 44.39 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 C -0.17 -8.09 9.43 30.60 0.29 -7.80 16 21 C -0.19 -7.94 9.89 30.62 0.30 -7.64 16 22 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.08 1.88 6.91 -2.39 -0.02 1.87 16 24 H 0.07 2.08 5.47 -2.39 -0.01 2.07 16 25 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 26 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 27 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 28 H 0.07 2.59 7.00 -2.39 -0.02 2.57 16 29 H 0.06 2.53 7.34 -2.38 -0.02 2.51 16 30 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 1.80 6.81 -2.39 -0.02 1.78 16 32 H 0.26 13.94 8.32 -92.71 -0.77 13.16 16 33 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 34 H 0.05 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.09 3.27 8.09 -2.39 -0.02 3.25 16 36 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 Total: -1.00 -57.02 312.17 5.92 -51.10 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 1.06 Total: 16.44 kcal Atomic # 6 Polarization: -62.20 SS G_CDS: 2.64 Total: -59.56 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.28 Total: -50.74 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.07 Total: -1.63 kcal Total: -57.02 5.92 -51.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.117 kcal (2) G-P(sol) polarization free energy of solvation -57.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds