Wall clock time and date at job start Mon Mar 30 2020 06:32:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.47287 * 125.83165 * 2 1
4 4 C 1.54225 * 103.05417 * 180.24296 * 3 2 1
5 5 N 1.46971 * 103.83321 * 359.77054 * 4 3 2
6 6 C 1.28247 * 110.18708 * 359.97438 * 5 4 3
7 7 C 1.50705 * 122.70687 * 180.02562 * 6 5 4
8 8 H 1.09004 * 109.47045 * 207.70179 * 7 6 5
9 9 C 1.50694 * 109.46962 * 327.70328 * 7 6 5
10 10 H 1.08001 * 120.00453 * 114.78308 * 9 7 6
11 11 C 1.37879 * 120.00059 * 294.78117 * 9 7 6
12 12 N 1.31517 * 120.00062 * 4.83560 * 11 9 7
13 13 Si 1.86805 * 120.00255 * 184.84087 * 11 9 7
14 14 H 1.48498 * 109.46868 * 59.99807 * 13 11 9
15 15 H 1.48502 * 109.47268 * 180.02562 * 13 11 9
16 16 H 1.48499 * 109.46993 * 299.99780 * 13 11 9
17 17 C 1.53002 * 109.47116 * 87.70184 * 7 6 5
18 18 C 1.50698 * 109.46922 * 65.66458 * 17 7 6
19 19 C 1.33390 * 125.20554 * 84.02526 * 18 17 7
20 20 C 1.38427 * 114.92307 * 179.97438 * 19 18 17
21 21 C 1.33388 * 114.91567 * 0.24625 * 20 19 18
22 22 S 1.75876 * 109.59872 * 359.63499 * 21 20 19
23 23 H 1.08994 * 109.47428 * 271.78643 * 1 2 3
24 24 H 1.09006 * 109.47171 * 31.79042 * 1 2 3
25 25 H 1.09002 * 109.47420 * 151.78370 * 1 2 3
26 26 H 1.09007 * 110.89998 * 61.76510 * 3 2 1
27 27 H 1.08998 * 110.50515 * 298.54650 * 3 2 1
28 28 H 1.08997 * 110.55615 * 241.18342 * 4 3 2
29 29 H 1.08997 * 110.55276 * 118.35862 * 4 3 2
30 30 H 0.97000 * 120.00037 * 180.02562 * 12 11 9
31 31 H 1.09002 * 109.46902 * 305.66505 * 17 7 6
32 32 H 1.08997 * 109.46999 * 185.66416 * 17 7 6
33 33 H 1.08004 * 122.53745 * 359.93816 * 19 18 17
34 34 H 1.07999 * 122.53719 * 179.97438 * 20 19 18
35 35 H 1.08005 * 125.19815 * 179.74978 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.3272 1.1941 0.0000
4 6 3.7492 0.5970 -0.0064
5 7 3.5207 -0.8548 -0.0035
6 6 2.2629 -1.1048 0.0036
7 6 1.7114 -2.5074 0.0088
8 1 0.7291 -2.5133 -0.4637
9 6 2.6413 -3.4155 -0.7539
10 1 3.1629 -4.2093 -0.2399
11 6 2.8261 -3.2330 -2.1080
12 7 2.2665 -2.2099 -2.7161
13 14 3.8712 -4.4390 -3.0790
14 1 3.2819 -5.7982 -2.9772
15 1 3.9131 -4.0224 -4.5037
16 1 5.2500 -4.4548 -2.5276
17 6 1.5864 -3.0009 1.4516
18 6 0.5521 -2.1784 2.1760
19 6 -0.7635 -2.3969 2.1455
20 6 -1.5196 -1.5091 2.8913
21 6 -0.8185 -0.5665 3.5232
22 16 0.8949 -0.7838 3.1914
23 1 -0.3634 0.0320 1.0271
24 1 -0.3634 0.8735 -0.5414
25 1 -0.3634 -0.9055 -0.4859
26 1 2.1643 1.7914 0.8972
27 1 2.1552 1.7893 -0.8968
28 1 4.2956 0.9002 0.8867
29 1 4.2866 0.8981 -0.9056
30 1 2.3963 -2.0817 -3.6688
31 1 2.5481 -2.9003 1.9547
32 1 1.2836 -4.0480 1.4525
33 1 -1.2052 -3.2049 1.5813
34 1 -2.5960 -1.5721 2.9531
35 1 -1.2387 0.2101 4.1452
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259842884.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:32:15
Heat of formation + Delta-G solvation = 52.447908 kcal
Electronic energy + Delta-G solvation = -18533.832949 eV
Core-core repulsion = 15851.353498 eV
Total energy + Delta-G solvation = -2682.479451 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 264.099 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.73320 -38.69087 -35.99661 -33.76987 -33.50160 -30.77199 -29.02337 -27.05772
-26.80640 -24.51600 -23.11379 -22.75640 -20.21973 -19.43990 -18.10562 -17.60125
-16.94467 -16.82853 -16.42259 -16.10759 -15.40561 -14.88205 -14.43284 -14.31779
-13.86324 -13.49040 -13.35518 -13.26871 -12.99071 -12.90305 -12.73696 -12.64788
-12.58459 -12.52217 -11.88989 -11.74710 -11.38657 -11.26611 -11.01567 -10.41311
-10.11547 -9.34530 -9.21944 -8.29628 -8.06982 -6.13873 0.27174 0.88282
1.30831 1.42712 1.46468 1.51287 2.01768 2.31049 2.50213 2.65446
3.30651 3.92276 4.07747 4.23056 4.29004 4.34208 4.37960 4.48224
4.59702 4.74058 4.77352 4.84285 4.85936 4.89770 4.94468 5.14159
5.23014 5.32590 5.48457 5.60718 5.64296 5.78561 5.88565 6.00609
6.21085 6.81592 7.14792 7.52399 7.88218 9.00204
Molecular weight = 264.10amu
Principal moments of inertia in cm(-1)
A = 0.023097 B = 0.008132 C = 0.006979
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1211.981082 B = 3442.448354 C = 4010.916953
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.121 3.879
2 N -0.647 5.647
3 C 0.088 3.912
4 C 0.023 3.977
5 N -0.622 5.622
6 C 0.428 3.572
7 C 0.107 3.893
8 H 0.029 0.971
9 C -0.512 4.512
10 H 0.055 0.945
11 C 0.030 3.970
12 N -0.905 5.905
13 Si 0.947 3.053
14 H -0.264 1.264
15 H -0.290 1.290
16 H -0.282 1.282
17 C -0.031 4.031
18 C -0.165 4.165
19 C -0.152 4.152
20 C -0.128 4.128
21 C -0.220 4.220
22 S 0.067 5.933
23 H 0.058 0.942
24 H 0.064 0.936
25 H 0.049 0.951
26 H 0.081 0.919
27 H 0.058 0.942
28 H 0.077 0.923
29 H 0.054 0.946
30 H 0.254 0.746
31 H 0.051 0.949
32 H 0.086 0.914
33 H 0.142 0.858
34 H 0.164 0.836
35 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.304 5.317 10.239 14.215
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.023 4.023
2 N -0.370 5.370
3 C -0.037 4.037
4 C -0.108 4.108
5 N -0.350 5.350
6 C 0.152 3.848
7 C 0.087 3.913
8 H 0.047 0.953
9 C -0.550 4.550
10 H 0.073 0.927
11 C -0.171 4.171
12 N -0.543 5.543
13 Si 0.774 3.226
14 H -0.189 1.189
15 H -0.216 1.216
16 H -0.208 1.208
17 C -0.071 4.071
18 C -0.282 4.282
19 C -0.182 4.182
20 C -0.159 4.159
21 C -0.355 4.355
22 S 0.331 5.669
23 H 0.077 0.923
24 H 0.083 0.917
25 H 0.068 0.932
26 H 0.099 0.901
27 H 0.076 0.924
28 H 0.095 0.905
29 H 0.073 0.927
30 H 0.063 0.937
31 H 0.070 0.930
32 H 0.105 0.895
33 H 0.160 0.840
34 H 0.181 0.819
35 H 0.203 0.797
Dipole moment (debyes) X Y Z Total
from point charges -6.242 5.854 10.511 13.554
hybrid contribution -0.960 -0.512 -1.557 1.900
sum -7.202 5.342 8.954 12.672
Atomic orbital electron populations
1.21387 0.78287 1.01569 1.01051 1.48022 1.05576 1.04413 1.79022
1.22446 0.91394 0.88813 1.01032 1.22990 0.95792 0.91440 1.00533
1.74195 1.15626 1.11325 1.33874 1.23412 0.86887 0.90472 0.84013
1.17598 0.95756 0.86344 0.91644 0.95322 1.21039 1.26764 1.14174
0.93058 0.92680 1.25504 0.96377 0.96355 0.98824 1.70043 1.45397
1.29072 1.09814 0.85794 0.79459 0.80132 0.77264 1.18871 1.21636
1.20818 1.20098 0.95050 0.98109 0.93836 1.24588 0.98630 1.01077
1.03951 1.20312 0.91977 1.02928 1.02995 1.20320 1.02054 0.94973
0.98513 1.25829 0.94845 1.06056 1.08789 1.84434 1.08724 1.28167
1.45612 0.92348 0.91695 0.93201 0.90119 0.92376 0.90497 0.92749
0.93690 0.93018 0.89515 0.84030 0.81868 0.79719
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.12 4.18 9.60 127.77 1.23 5.41 16
2 N -0.65 -26.35 3.34 -717.14 -2.39 -28.75 16
3 C 0.09 3.18 7.77 86.64 0.67 3.86 16
4 C 0.02 0.94 8.06 86.70 0.70 1.64 16
5 N -0.62 -31.75 10.96 -335.52 -3.68 -35.43 16
6 C 0.43 20.38 4.98 138.37 0.69 21.07 16
7 C 0.11 5.22 1.81 -12.29 -0.02 5.20 16
8 H 0.03 1.49 6.61 -2.38 -0.02 1.48 16
9 C -0.51 -28.06 8.03 25.60 0.21 -27.85 16
10 H 0.05 3.00 7.75 -2.91 -0.02 2.98 16
11 C 0.03 1.66 5.36 84.65 0.45 2.12 16
12 N -0.90 -52.59 12.52 21.45 0.27 -52.32 16
13 Si 0.95 45.11 29.54 68.60 2.03 47.14 16
14 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16
15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16
16 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16
17 C -0.03 -1.25 5.11 29.85 0.15 -1.10 16
18 C -0.17 -5.60 3.79 24.59 0.09 -5.50 16
19 C -0.15 -4.38 9.41 21.22 0.20 -4.18 16
20 C -0.13 -2.95 9.68 21.22 0.21 -2.75 16
21 C -0.22 -5.05 10.48 66.72 0.70 -4.35 16
22 S 0.07 2.02 21.97 -56.49 -1.24 0.78 16
23 H 0.06 1.80 4.55 -2.39 -0.01 1.79 16
24 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16
25 H 0.05 1.92 6.63 -2.39 -0.02 1.90 16
26 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16
27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
28 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16
29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16
30 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16
31 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16
32 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16
33 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16
34 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16
35 H 0.19 3.06 8.06 -2.91 -0.02 3.03 16
Total: -1.00 -65.01 298.73 1.34 -63.68
By element:
Atomic # 1 Polarization: 10.26 SS G_CDS: 1.08 Total: 11.34 kcal
Atomic # 6 Polarization: -11.72 SS G_CDS: 5.27 Total: -6.44 kcal
Atomic # 7 Polarization: -110.70 SS G_CDS: -5.80 Total: -116.50 kcal
Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal
Atomic # 16 Polarization: 2.02 SS G_CDS: -1.24 Total: 0.78 kcal
Total: -65.01 1.34 -63.68 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259842884.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.123 kcal
(2) G-P(sol) polarization free energy of solvation -65.015 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.109 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.675 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.448 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds